Wall clock time and date at job start Mon Mar 30 2020 02:21:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46979 * 2 1 4 4 C 1.50700 * 109.47132 * 240.00180 * 2 1 3 5 5 H 1.07995 * 119.99741 * 239.99774 * 4 2 1 6 6 C 1.37875 * 119.99973 * 59.99939 * 4 2 1 7 7 N 1.31512 * 120.00332 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 119.99735 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46950 * 60.00390 * 8 6 4 10 10 H 1.48504 * 109.47038 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47332 * 299.99972 * 8 6 4 12 12 N 1.46499 * 109.47288 * 119.99801 * 2 1 3 13 13 C 1.34777 * 120.00199 * 275.00460 * 12 2 1 14 14 O 1.21283 * 119.99750 * 359.97438 * 13 12 2 15 15 C 1.50702 * 119.99928 * 180.27479 * 13 12 2 16 16 C 1.53002 * 115.54663 * 325.30211 * 15 13 12 17 17 C 1.52999 * 117.49956 * 179.63765 * 15 13 12 18 18 C 1.53000 * 117.49989 * 110.97543 * 15 13 12 19 19 H 1.08996 * 117.49636 * 214.97916 * 18 15 13 20 20 F 1.39898 * 117.49677 * 0.02562 * 18 15 13 21 21 H 1.09007 * 109.47320 * 60.00143 * 1 2 3 22 22 H 1.08993 * 109.47268 * 180.02562 * 1 2 3 23 23 H 1.09006 * 109.47495 * 300.00247 * 1 2 3 24 24 H 0.97002 * 120.00028 * 180.02562 * 7 6 4 25 25 H 0.97000 * 119.99484 * 94.99557 * 12 2 1 26 26 H 1.09003 * 109.47348 * 34.42291 * 16 15 13 27 27 H 1.09004 * 109.46381 * 154.41969 * 16 15 13 28 28 H 1.08991 * 109.47221 * 274.41873 * 16 15 13 29 29 H 1.09007 * 117.49591 * 359.97438 * 17 15 13 30 30 H 1.08990 * 117.50150 * 144.99237 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5884 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8280 -2.5197 -4.0082 10 1 1.8269 -0.4198 -5.2205 11 1 3.8075 -1.1189 -4.0077 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3572 14 8 1.8589 1.1586 2.4115 15 6 2.6553 -0.7271 3.5861 16 6 2.2369 -2.1925 3.7230 17 6 2.7869 0.0929 4.8710 18 6 4.0406 -0.3365 4.1048 19 1 4.6538 -1.1233 4.5439 20 9 4.7383 0.6518 3.4023 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0276 0.0005 23 1 -0.3634 0.5139 0.8900 24 1 0.7089 1.1614 -3.4844 25 1 2.2490 -1.6317 1.1526 26 1 2.1856 -2.6496 2.7347 27 1 2.9687 -2.7238 4.3315 28 1 1.2586 -2.2479 4.2001 29 1 2.5063 1.1454 4.8273 30 1 2.5755 -0.4114 5.8138 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307090281.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:26 Heat of formation + Delta-G solvation = -69.697805 kcal Electronic energy + Delta-G solvation = -14653.240111 eV Core-core repulsion = 11977.581321 eV Total energy + Delta-G solvation = -2675.658789 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.42516 -39.29574 -36.24441 -34.69405 -32.38613 -29.35466 -27.98737 -25.24702 -23.40556 -22.37720 -20.44139 -18.98615 -17.34479 -16.33296 -15.68747 -15.31978 -14.76837 -14.59411 -14.20327 -13.35087 -13.15435 -12.98961 -12.62429 -12.39772 -12.29221 -11.83014 -11.56251 -11.08384 -10.94358 -10.73863 -10.31500 -10.23227 -10.15795 -9.80846 -9.04973 -8.99555 -8.53409 -7.89439 -6.10525 -4.19907 2.96799 3.26859 3.31855 3.33196 3.81701 3.95936 4.23100 4.37025 4.55614 4.87356 5.01279 5.21349 5.30373 5.54153 5.70006 5.73250 5.84082 6.14828 6.17354 6.83755 6.97694 7.16103 7.47553 7.57184 7.70729 7.93192 8.16329 8.67754 8.79289 9.13497 9.47430 10.95565 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.042717 B = 0.007790 C = 0.007575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 655.323940 B = 3593.339474 C = 3695.317541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.534 4.534 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.902 3.098 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.701 5.701 13 C 0.537 3.463 14 O -0.548 6.548 15 C -0.176 4.176 16 C -0.112 4.112 17 C -0.160 4.160 18 C 0.042 3.958 19 H 0.137 0.863 20 F -0.176 7.176 21 H 0.091 0.909 22 H 0.026 0.974 23 H 0.014 0.986 24 H 0.265 0.735 25 H 0.388 0.612 26 H 0.069 0.931 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.117 0.883 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.284 -6.715 11.852 14.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.162 3.838 3 H 0.066 0.934 4 C -0.572 4.572 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.730 3.270 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.349 5.349 13 C 0.320 3.680 14 O -0.427 6.427 15 C -0.180 4.180 16 C -0.170 4.170 17 C -0.198 4.198 18 C 0.005 3.995 19 H 0.154 0.846 20 F -0.156 7.156 21 H 0.109 0.891 22 H 0.045 0.955 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.222 0.778 26 H 0.088 0.912 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.135 0.865 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 2.994 -5.709 11.662 13.325 hybrid contribution 0.431 -0.848 -0.968 1.357 sum 3.425 -6.557 10.694 13.003 Atomic orbital electron populations 1.22074 0.98389 0.99102 1.00919 1.18768 0.91048 0.94044 0.79899 0.93365 1.21170 1.32494 1.13244 0.90318 0.92133 1.24889 0.94814 0.94961 0.99048 1.69894 1.35836 1.22396 1.23987 0.86495 0.79201 0.79544 0.81781 1.20165 1.21094 1.20154 1.46450 1.64660 1.13592 1.10176 1.19097 0.78532 0.86697 0.83627 1.90651 1.51313 1.15838 1.84874 1.22458 1.00892 0.98072 0.96565 1.21332 1.01813 0.90814 1.03008 1.23719 0.98852 1.02726 0.94479 1.22291 0.86506 0.92204 0.98458 0.84620 1.92857 1.79740 1.63196 1.79782 0.89089 0.95454 0.96676 0.92505 0.77838 0.91166 0.91630 0.91179 0.86497 0.86850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.73 9.26 37.16 0.34 -3.38 16 2 C 0.26 6.96 2.56 -69.08 -0.18 6.78 16 3 H 0.05 1.48 7.58 -51.93 -0.39 1.08 16 4 C -0.53 -14.48 8.73 -34.44 -0.30 -14.79 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.16 16 6 C 0.07 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.88 -25.34 11.32 55.43 0.63 -24.71 16 8 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 9 H -0.28 -6.25 7.11 56.52 0.40 -5.85 16 10 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 12 N -0.70 -15.30 4.97 -54.93 -0.27 -15.58 16 13 C 0.54 11.38 6.99 -10.98 -0.08 11.31 16 14 O -0.55 -13.92 15.92 5.55 0.09 -13.83 16 15 C -0.18 -2.65 2.61 -155.66 -0.41 -3.06 16 16 C -0.11 -1.25 9.79 37.16 0.36 -0.88 16 17 C -0.16 -2.07 9.75 -26.69 -0.26 -2.33 16 18 C 0.04 0.57 7.48 -26.69 -0.20 0.37 16 19 H 0.14 1.27 8.05 -51.93 -0.42 0.85 16 20 F -0.18 -3.18 17.13 2.25 0.04 -3.14 16 21 H 0.09 2.50 6.07 -51.93 -0.32 2.19 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.39 7.31 6.85 -40.82 -0.28 7.03 16 26 H 0.07 0.80 6.39 -51.93 -0.33 0.47 16 27 H 0.06 0.54 7.90 -51.93 -0.41 0.12 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.12 1.78 7.67 -51.92 -0.40 1.38 16 30 H 0.11 1.03 8.14 -51.93 -0.42 0.61 16 LS Contribution 261.79 15.07 3.95 3.95 Total: -1.00 -32.28 261.79 -5.18 -37.46 By element: Atomic # 1 Polarization: 7.99 SS G_CDS: -3.78 Total: 4.21 kcal Atomic # 6 Polarization: -3.46 SS G_CDS: -0.81 Total: -4.26 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.35 Total: -40.29 kcal Atomic # 8 Polarization: -13.92 SS G_CDS: 0.09 Total: -13.83 kcal Atomic # 9 Polarization: -3.18 SS G_CDS: 0.04 Total: -3.14 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -32.28 -5.18 -37.46 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090281.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.236 kcal (2) G-P(sol) polarization free energy of solvation -32.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.461 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.698 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds