Wall clock time and date at job start Mon Mar 30 2020 02:21:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47432 * 0.02562 * 8 6 4 10 10 H 1.48506 * 109.46890 * 120.00210 * 8 6 4 11 11 H 1.48501 * 109.47062 * 240.00257 * 8 6 4 12 12 N 1.46499 * 109.46799 * 120.00100 * 2 1 3 13 13 C 1.34778 * 119.99771 * 274.99826 * 12 2 1 14 14 O 1.21279 * 120.00041 * 0.02562 * 13 12 2 15 15 C 1.50703 * 119.99935 * 180.02562 * 13 12 2 16 16 C 1.52998 * 115.55041 * 34.32793 * 15 13 12 17 17 C 1.52995 * 117.49987 * 180.02562 * 15 13 12 18 18 C 1.52997 * 60.00332 * 107.49099 * 17 15 13 19 19 H 1.09007 * 117.49834 * 252.51742 * 18 17 15 20 20 F 1.39890 * 117.50387 * 107.49112 * 18 17 15 21 21 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 22 22 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 23 23 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 0.96998 * 120.00630 * 95.00428 * 12 2 1 26 26 H 1.09010 * 109.46859 * 85.58841 * 16 15 13 27 27 H 1.09000 * 109.47394 * 205.58234 * 16 15 13 28 28 H 1.09001 * 109.47583 * 325.58806 * 16 15 13 29 29 H 1.08999 * 117.50227 * 214.97667 * 17 15 13 30 30 H 1.09002 * 117.50244 * 359.97438 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 3.1457 -2.2877 -3.6037 10 1 1.1662 -1.5867 -4.8160 11 1 3.1468 -0.1874 -4.8164 12 7 2.0183 -0.6906 1.1962 13 6 2.1470 -0.0182 2.3571 14 8 1.8581 1.1584 2.4117 15 6 2.6498 -0.7285 3.5875 16 6 3.6948 -1.8181 3.3397 17 6 2.7731 0.0894 4.8746 18 6 1.6578 -0.9481 4.7315 19 1 0.6414 -0.5787 4.5941 20 9 1.7758 -2.1296 5.4711 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5139 0.8899 24 1 0.7096 1.1617 -3.4844 25 1 2.2490 -1.6318 1.1527 26 1 4.6867 -1.3677 3.2989 27 1 3.6596 -2.5464 4.1499 28 1 3.4830 -2.3165 2.3937 29 1 3.5989 -0.1487 5.5451 30 1 2.4910 1.1414 4.8314 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307090282.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:27 Heat of formation + Delta-G solvation = -90.634174 kcal Electronic energy + Delta-G solvation = -14537.424335 eV Core-core repulsion = 11860.857676 eV Total energy + Delta-G solvation = -2676.566658 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -48.75219 -40.97916 -37.55209 -36.54601 -34.37467 -31.19112 -29.32509 -27.36970 -24.91128 -23.42779 -22.25911 -20.66002 -18.98750 -17.98164 -17.32420 -16.94924 -16.54189 -15.88100 -15.75566 -15.39752 -14.73803 -14.39275 -14.00837 -13.74029 -13.31746 -13.29495 -13.05766 -12.89980 -12.89483 -12.73253 -12.29890 -12.12643 -11.45701 -11.12323 -11.00365 -10.69823 -10.58278 -9.80504 -8.19559 -6.37134 1.43477 1.44637 1.46791 1.57048 2.27364 2.47129 2.58822 3.09046 3.13081 3.42076 3.71757 3.90985 3.93449 4.57990 4.70742 4.76324 4.79449 4.82733 4.89501 5.06340 5.08422 5.20724 5.40616 5.57634 5.65576 5.86496 6.07315 6.70272 6.88925 7.29067 7.46962 8.87100 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.050321 B = 0.007193 C = 0.006804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 556.293639 B = 3891.859104 C = 4114.460605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.269 3.731 3 H 0.001 0.999 4 C -0.548 4.548 5 H 0.073 0.927 6 C 0.015 3.985 7 N -0.917 5.917 8 Si 0.973 3.027 9 H -0.260 1.260 10 H -0.278 1.278 11 H -0.283 1.283 12 N -0.697 5.697 13 C 0.533 3.467 14 O -0.594 6.594 15 C -0.184 4.184 16 C -0.113 4.113 17 C -0.140 4.140 18 C 0.050 3.950 19 H 0.139 0.861 20 F -0.178 7.178 21 H 0.068 0.932 22 H 0.040 0.960 23 H 0.014 0.986 24 H 0.266 0.734 25 H 0.404 0.596 26 H 0.077 0.923 27 H 0.086 0.914 28 H 0.067 0.933 29 H 0.139 0.861 30 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.735 -6.646 11.380 13.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.165 3.835 3 H 0.019 0.981 4 C -0.586 4.586 5 H 0.091 0.909 6 C -0.185 4.185 7 N -0.556 5.556 8 Si 0.797 3.203 9 H -0.184 1.184 10 H -0.204 1.204 11 H -0.209 1.209 12 N -0.346 5.346 13 C 0.320 3.680 14 O -0.476 6.476 15 C -0.188 4.188 16 C -0.171 4.171 17 C -0.178 4.178 18 C 0.014 3.986 19 H 0.156 0.844 20 F -0.158 7.158 21 H 0.087 0.913 22 H 0.059 0.941 23 H 0.033 0.967 24 H 0.075 0.925 25 H 0.240 0.760 26 H 0.096 0.904 27 H 0.105 0.895 28 H 0.086 0.914 29 H 0.157 0.843 30 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 3.447 -5.758 11.263 13.110 hybrid contribution 0.114 -0.433 -1.036 1.128 sum 3.561 -6.190 10.227 12.473 Atomic orbital electron populations 1.21905 0.98137 0.99534 0.99735 1.18411 0.91265 0.92004 0.81792 0.98117 1.21568 1.32649 1.13587 0.90775 0.90873 1.25802 0.94830 0.95576 1.02337 1.70053 1.36971 1.23899 1.24631 0.85283 0.78121 0.78526 0.78328 1.18362 1.20384 1.20890 1.46276 1.64503 1.14211 1.09595 1.19919 0.77209 0.86283 0.84608 1.90631 1.53328 1.17847 1.85773 1.22301 1.03606 1.03556 0.89332 1.21330 0.96576 0.95716 1.03431 1.23819 1.00405 0.98033 0.95499 1.22151 0.97749 0.84564 0.94174 0.84381 1.92784 1.97302 1.48694 1.77044 0.91348 0.94081 0.96726 0.92477 0.75985 0.90381 0.89518 0.91398 0.84282 0.86827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.80 9.26 71.98 0.67 -6.14 16 2 C 0.27 13.95 2.56 44.25 0.11 14.07 16 3 H 0.00 0.06 7.58 -2.39 -0.02 0.04 16 4 C -0.55 -28.94 8.73 25.60 0.22 -28.72 16 5 H 0.07 3.61 7.74 -2.91 -0.02 3.59 16 6 C 0.01 0.78 5.30 84.66 0.45 1.23 16 7 N -0.92 -52.42 11.32 21.45 0.24 -52.17 16 8 Si 0.97 41.74 29.54 68.60 2.03 43.77 16 9 H -0.26 -10.52 7.11 99.48 0.71 -9.82 16 10 H -0.28 -11.69 7.11 99.48 0.71 -10.98 16 11 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 12 N -0.70 -29.19 4.97 -446.09 -2.22 -31.41 16 13 C 0.53 21.26 7.36 87.66 0.64 21.91 16 14 O -0.59 -28.64 15.92 -3.03 -0.05 -28.69 16 15 C -0.18 -5.22 2.61 -52.93 -0.14 -5.36 16 16 C -0.11 -2.58 9.76 71.98 0.70 -1.88 16 17 C -0.14 -3.29 9.75 30.59 0.30 -2.99 16 18 C 0.05 1.24 7.54 30.59 0.23 1.47 16 19 H 0.14 3.38 8.14 -2.38 -0.02 3.36 16 20 F -0.18 -4.33 16.50 44.97 0.74 -3.59 16 21 H 0.07 3.78 6.07 -2.39 -0.01 3.77 16 22 H 0.04 1.91 8.14 -2.39 -0.02 1.89 16 23 H 0.01 0.69 8.14 -2.39 -0.02 0.67 16 24 H 0.27 14.32 8.31 -92.71 -0.77 13.55 16 25 H 0.40 14.49 6.84 -92.71 -0.63 13.86 16 26 H 0.08 1.64 8.14 -2.38 -0.02 1.62 16 27 H 0.09 1.68 7.10 -2.39 -0.02 1.66 16 28 H 0.07 1.56 6.38 -2.39 -0.02 1.55 16 29 H 0.14 2.45 8.14 -2.39 -0.02 2.43 16 30 H 0.11 2.93 7.67 -2.39 -0.02 2.91 16 Total: -1.00 -64.25 260.83 4.45 -59.80 By element: Atomic # 1 Polarization: 18.19 SS G_CDS: 0.51 Total: 18.70 kcal Atomic # 6 Polarization: -9.60 SS G_CDS: 3.19 Total: -6.41 kcal Atomic # 7 Polarization: -81.61 SS G_CDS: -1.97 Total: -83.58 kcal Atomic # 8 Polarization: -28.64 SS G_CDS: -0.05 Total: -28.69 kcal Atomic # 9 Polarization: -4.33 SS G_CDS: 0.74 Total: -3.59 kcal Atomic # 14 Polarization: 41.74 SS G_CDS: 2.03 Total: 43.77 kcal Total: -64.25 4.45 -59.80 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090282.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.834 kcal (2) G-P(sol) polarization free energy of solvation -64.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.800 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds