Wall clock time and date at job start Mon Mar 30 2020 02:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46821 * 2 1 4 4 C 1.50698 * 109.47254 * 240.00416 * 2 1 3 5 5 H 1.08001 * 119.99810 * 239.99654 * 4 2 1 6 6 C 1.37872 * 120.00051 * 59.99844 * 4 2 1 7 7 N 1.31514 * 120.00244 * 359.97438 * 6 4 2 8 8 Si 1.86808 * 120.00083 * 180.02562 * 6 4 2 9 9 H 1.48496 * 109.47231 * 89.99406 * 8 6 4 10 10 H 1.48500 * 109.47013 * 209.99751 * 8 6 4 11 11 H 1.48498 * 109.46665 * 329.99226 * 8 6 4 12 12 N 1.46496 * 109.47519 * 119.99796 * 2 1 3 13 13 C 1.34777 * 120.00266 * 275.00721 * 12 2 1 14 14 O 1.21274 * 120.00135 * 0.27234 * 13 12 2 15 15 C 1.50706 * 119.99766 * 179.97438 * 13 12 2 16 16 C 1.53001 * 115.55093 * 325.57990 * 15 13 12 17 17 C 1.53001 * 117.49369 * 179.90768 * 15 13 12 18 18 C 1.53001 * 117.49470 * 111.25000 * 15 13 12 19 19 H 1.08996 * 117.49978 * 0.02562 * 18 15 13 20 20 F 1.39895 * 117.49942 * 214.97456 * 18 15 13 21 21 H 1.08992 * 109.47302 * 59.99796 * 1 2 3 22 22 H 1.09002 * 109.46821 * 179.97438 * 1 2 3 23 23 H 1.08998 * 109.47335 * 299.99191 * 1 2 3 24 24 H 0.97005 * 120.00318 * 180.02562 * 7 6 4 25 25 H 0.96999 * 119.99691 * 94.99706 * 12 2 1 26 26 H 1.09000 * 109.46901 * 34.42072 * 16 15 13 27 27 H 1.08996 * 109.46562 * 154.41857 * 16 15 13 28 28 H 1.08994 * 109.47011 * 274.41506 * 16 15 13 29 29 H 1.09000 * 117.50209 * 0.02562 * 17 15 13 30 30 H 1.09004 * 117.49414 * 144.99419 * 17 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2305 5 1 2.6533 -1.5884 -1.1314 6 6 1.6993 -0.2392 -2.4827 7 7 0.9427 0.8298 -2.6034 8 14 2.3214 -1.1201 -4.0080 9 1 1.3429 -2.1615 -4.4119 10 1 2.4866 -0.1411 -5.1123 11 1 3.6294 -1.7579 -3.7123 12 7 2.0184 -0.6905 1.1961 13 6 2.1471 -0.0182 2.3571 14 8 1.8538 1.1572 2.4129 15 6 2.6490 -0.7288 3.5877 16 6 2.2292 -2.1941 3.7209 17 6 2.7749 0.0898 4.8741 18 6 4.0320 -0.3395 4.1135 19 1 4.5787 0.4309 3.5696 20 9 4.8159 -1.3504 4.6798 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 -0.3634 0.5137 0.8900 24 1 0.7081 1.1610 -3.4844 25 1 2.2491 -1.6317 1.1525 26 1 2.1825 -2.6500 2.7319 27 1 2.9578 -2.7265 4.3324 28 1 1.2486 -2.2496 4.1934 29 1 2.4944 1.1422 4.8305 30 1 2.5586 -0.4155 5.8154 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307090283.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:30 Heat of formation + Delta-G solvation = -71.370846 kcal Electronic energy + Delta-G solvation = -14532.912353 eV Core-core repulsion = 11857.181015 eV Total energy + Delta-G solvation = -2675.731338 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.65533 -39.41964 -36.14279 -34.73660 -32.44239 -29.42425 -28.10090 -25.28719 -23.34882 -22.35141 -20.44108 -19.02047 -17.57907 -16.32566 -15.75048 -15.40061 -14.94052 -14.72271 -14.27874 -13.60104 -13.15830 -12.95817 -12.49191 -12.27026 -12.23383 -11.94200 -11.60953 -11.12892 -10.96751 -10.77198 -10.34871 -10.30694 -10.25760 -9.84552 -9.09964 -9.04436 -8.58388 -7.96588 -6.14834 -4.24414 2.89904 3.23082 3.29958 3.32256 3.69823 3.92077 4.27962 4.37315 4.54484 4.83963 5.01936 5.17317 5.29312 5.60709 5.74784 5.81791 5.82123 6.12063 6.20521 6.79514 6.93680 7.11515 7.40390 7.51942 7.66406 7.87896 8.11743 8.61342 8.74040 9.05329 9.43225 10.91144 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.044157 B = 0.007418 C = 0.006898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.945005 B = 3773.792462 C = 4057.881025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.263 3.737 3 H 0.049 0.951 4 C -0.535 4.535 5 H 0.061 0.939 6 C 0.066 3.934 7 N -0.883 5.883 8 Si 0.902 3.098 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.273 1.273 12 N -0.700 5.700 13 C 0.537 3.463 14 O -0.551 6.551 15 C -0.172 4.172 16 C -0.117 4.117 17 C -0.156 4.156 18 C 0.040 3.960 19 H 0.137 0.863 20 F -0.181 7.181 21 H 0.091 0.909 22 H 0.027 0.973 23 H 0.015 0.985 24 H 0.265 0.735 25 H 0.390 0.610 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.122 0.878 30 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.160 -4.774 10.596 12.043 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.162 3.838 3 H 0.067 0.933 4 C -0.573 4.573 5 H 0.080 0.920 6 C -0.137 4.137 7 N -0.521 5.521 8 Si 0.729 3.271 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.198 1.198 12 N -0.347 5.347 13 C 0.320 3.680 14 O -0.431 6.431 15 C -0.176 4.176 16 C -0.174 4.174 17 C -0.194 4.194 18 C 0.004 3.996 19 H 0.155 0.845 20 F -0.162 7.162 21 H 0.109 0.891 22 H 0.046 0.954 23 H 0.034 0.966 24 H 0.075 0.925 25 H 0.223 0.777 26 H 0.088 0.912 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.140 0.860 30 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 2.875 -3.838 10.444 11.492 hybrid contribution 0.410 -1.048 -0.868 1.421 sum 3.285 -4.886 9.576 11.241 Atomic orbital electron populations 1.22080 0.98338 0.99197 1.00970 1.18793 0.91134 0.93992 0.79889 0.93305 1.21212 1.32541 1.13277 0.90291 0.92035 1.24888 0.94787 0.94931 0.99076 1.69902 1.35817 1.22426 1.23937 0.86436 0.79199 0.79281 0.82136 1.20509 1.21028 1.19821 1.46509 1.64275 1.13738 1.10196 1.19139 0.78628 0.86642 0.83551 1.90654 1.51545 1.15986 1.84887 1.22407 1.00682 0.98299 0.96214 1.21296 1.01897 0.91129 1.03118 1.23716 0.98380 1.02557 0.94720 1.22199 0.85355 0.90843 1.01225 0.84522 1.92772 1.75444 1.62158 1.85787 0.89060 0.95410 0.96603 0.92529 0.77654 0.91186 0.91272 0.91314 0.85981 0.87292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.67 9.26 37.16 0.34 -3.32 16 2 C 0.26 6.71 2.56 -69.09 -0.18 6.53 16 3 H 0.05 1.43 7.58 -51.93 -0.39 1.03 16 4 C -0.53 -14.16 8.73 -34.44 -0.30 -14.46 16 5 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.69 16 7 N -0.88 -24.81 11.32 55.43 0.63 -24.18 16 8 Si 0.90 20.57 29.54 -169.99 -5.02 15.55 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 10 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.70 -14.68 4.97 -54.93 -0.27 -14.95 16 13 C 0.54 10.74 7.35 -10.98 -0.08 10.66 16 14 O -0.55 -13.02 15.92 5.56 0.09 -12.93 16 15 C -0.17 -2.60 2.61 -155.65 -0.41 -3.01 16 16 C -0.12 -1.47 9.76 37.16 0.36 -1.11 16 17 C -0.16 -2.02 9.75 -26.69 -0.26 -2.28 16 18 C 0.04 0.55 7.54 -26.69 -0.20 0.35 16 19 H 0.14 1.82 8.14 -51.93 -0.42 1.40 16 20 F -0.18 -2.52 16.50 2.25 0.04 -2.48 16 21 H 0.09 2.46 6.07 -51.93 -0.32 2.14 16 22 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 23 H 0.01 0.37 8.14 -51.93 -0.42 -0.06 16 24 H 0.26 7.04 8.31 -40.82 -0.34 6.70 16 25 H 0.39 7.18 6.84 -40.82 -0.28 6.91 16 26 H 0.07 0.87 6.39 -51.93 -0.33 0.54 16 27 H 0.07 0.79 7.10 -51.93 -0.37 0.42 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.12 1.66 7.67 -51.93 -0.40 1.26 16 30 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 260.84 15.07 3.93 3.93 Total: -1.00 -29.72 260.84 -5.17 -34.89 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: -3.74 Total: 5.13 kcal Atomic # 6 Polarization: -4.14 SS G_CDS: -0.81 Total: -4.96 kcal Atomic # 7 Polarization: -39.49 SS G_CDS: 0.35 Total: -39.13 kcal Atomic # 8 Polarization: -13.02 SS G_CDS: 0.09 Total: -12.93 kcal Atomic # 9 Polarization: -2.52 SS G_CDS: 0.04 Total: -2.48 kcal Atomic # 14 Polarization: 20.57 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.72 -5.17 -34.89 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307090283.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.484 kcal (2) G-P(sol) polarization free energy of solvation -29.722 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.887 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.371 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds