Wall clock time and date at job start Mon Mar 30 2020 03:23:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09007 * 109.46721 * 2 1 4 4 C 1.50694 * 109.47355 * 239.99710 * 2 1 3 5 5 H 1.08000 * 120.00563 * 239.99848 * 4 2 1 6 6 C 1.37885 * 119.99902 * 60.00012 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47096 * 119.99653 * 2 1 3 13 13 C 1.48563 * 110.99715 * 295.29516 * 12 2 1 14 14 C 1.54380 * 104.58859 * 200.95884 * 13 12 2 15 15 H 1.09000 * 110.32466 * 264.95304 * 14 13 12 16 16 C 1.53009 * 110.40585 * 142.79463 * 14 13 12 17 17 O 1.42906 * 109.47082 * 69.31512 * 16 14 13 18 18 C 1.54259 * 105.06618 * 23.85657 * 14 13 12 19 19 H 1.08994 * 110.41168 * 241.05924 * 18 14 13 20 20 O 1.42900 * 110.32752 * 118.89203 * 18 14 13 21 21 C 1.48561 * 110.99651 * 179.87843 * 12 2 1 22 22 H 1.09002 * 109.47106 * 180.02562 * 1 2 3 23 23 H 1.08998 * 109.47089 * 300.00187 * 1 2 3 24 24 H 1.08995 * 109.47131 * 60.00355 * 1 2 3 25 25 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 26 26 H 1.08996 * 110.41347 * 319.73652 * 13 12 2 27 27 H 1.08997 * 110.41329 * 82.18718 * 13 12 2 28 28 H 1.09004 * 109.47106 * 189.30934 * 16 14 13 29 29 H 1.08989 * 109.47183 * 309.30782 * 16 14 13 30 30 H 0.96701 * 113.99526 * 180.02562 * 17 16 14 31 31 H 0.96694 * 113.99967 * 182.91127 * 20 18 14 32 32 H 1.09003 * 110.41214 * 277.81369 * 21 12 2 33 33 H 1.08998 * 110.41604 * 40.14303 * 21 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9427 0.8296 -2.6034 8 14 2.3226 -1.1197 -4.0078 9 1 1.8270 -0.4201 -5.2204 10 1 3.8076 -1.1190 -4.0076 11 1 1.8282 -2.5199 -4.0080 12 7 2.0197 -0.6924 1.1995 13 6 1.6384 0.0439 2.4322 14 6 2.6297 -0.4549 3.5054 15 1 2.1893 -1.2719 4.0770 16 6 3.0274 0.6911 4.4381 17 8 1.9061 1.0611 5.2430 18 6 3.8575 -0.9540 2.7162 19 1 4.0216 -2.0157 2.8999 20 8 5.0186 -0.2034 3.0775 21 6 3.5048 -0.7148 1.2323 22 1 -0.3633 -1.0277 0.0005 23 1 -0.3633 0.5139 0.8899 24 1 -0.3633 0.5138 -0.8900 25 1 0.7088 1.1611 -3.4845 26 1 1.7485 1.1180 2.2828 27 1 0.6149 -0.1981 2.7184 28 1 3.8459 0.3684 5.0816 29 1 3.3475 1.5476 3.8451 30 1 2.0861 1.7841 5.8595 31 1 5.8124 -0.4433 2.5804 32 1 3.8865 -1.5280 0.6150 33 1 3.9069 0.2399 0.8932 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307150639.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:23:05 Heat of formation + Delta-G solvation = -123.049534 kcal Electronic energy + Delta-G solvation = -15231.308580 eV Core-core repulsion = 12676.796591 eV Total energy + Delta-G solvation = -2554.511989 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.57056 -37.62355 -37.16834 -35.15005 -32.87363 -30.68424 -28.74627 -27.22680 -25.76412 -23.26708 -21.46887 -20.88671 -18.69311 -18.33285 -17.86335 -17.18601 -16.41898 -15.84056 -15.40612 -15.37843 -14.63446 -14.42840 -14.21164 -13.77414 -13.48289 -13.03245 -12.87348 -12.70604 -12.48753 -12.29305 -12.17338 -11.90925 -11.74000 -11.58398 -10.96989 -10.94332 -10.69989 -10.55822 -9.20948 -8.14181 -6.27546 1.41253 1.43815 1.51363 2.40286 3.04188 3.14733 3.27518 3.55139 3.74246 3.88693 4.20501 4.31356 4.43279 4.59342 4.62646 4.75610 4.79568 4.86068 4.95077 4.98623 5.09218 5.14485 5.23795 5.39908 5.65638 5.66708 6.14350 6.26048 6.53516 6.84229 6.86594 6.94805 7.41929 8.92157 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.043630 B = 0.008237 C = 0.007302 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.602663 B = 3398.428563 C = 3833.577123 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.208 3.792 3 H -0.039 1.039 4 C -0.522 4.522 5 H 0.060 0.940 6 C 0.009 3.991 7 N -0.922 5.922 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.269 1.269 11 H -0.270 1.270 12 N -0.512 5.512 13 C 0.046 3.954 14 C -0.085 4.085 15 H 0.098 0.902 16 C 0.106 3.894 17 O -0.592 6.592 18 C 0.119 3.881 19 H 0.090 0.910 20 O -0.570 6.570 21 C 0.017 3.983 22 H 0.033 0.967 23 H 0.023 0.977 24 H 0.061 0.939 25 H 0.263 0.737 26 H 0.018 0.982 27 H 0.071 0.929 28 H 0.067 0.933 29 H 0.035 0.965 30 H 0.396 0.604 31 H 0.396 0.604 32 H 0.078 0.922 33 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.655 -1.873 11.428 13.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.101 3.899 3 H -0.022 1.022 4 C -0.561 4.561 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.562 5.562 8 Si 0.790 3.210 9 H -0.209 1.209 10 H -0.194 1.194 11 H -0.195 1.195 12 N -0.237 5.237 13 C -0.082 4.082 14 C -0.103 4.103 15 H 0.116 0.884 16 C 0.028 3.972 17 O -0.401 6.401 18 C 0.059 3.941 19 H 0.108 0.892 20 O -0.378 6.378 21 C -0.112 4.112 22 H 0.052 0.948 23 H 0.042 0.958 24 H 0.080 0.920 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.090 0.910 28 H 0.086 0.914 29 H 0.053 0.947 30 H 0.245 0.755 31 H 0.247 0.753 32 H 0.096 0.904 33 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 5.649 -2.488 11.332 12.904 hybrid contribution 0.926 0.984 -1.291 1.869 sum 6.575 -1.503 10.041 12.096 Atomic orbital electron populations 1.21605 0.97312 0.99308 0.99575 1.19220 0.92863 0.90093 0.87738 1.02157 1.21347 1.31456 1.12438 0.90813 0.92173 1.25790 0.95261 0.95736 1.02140 1.70026 1.37635 1.24237 1.24257 0.85510 0.78770 0.78645 0.78106 1.20945 1.19430 1.19546 1.65412 1.08207 1.47930 1.02183 1.23024 0.99539 0.95087 0.90595 1.21975 0.94316 0.98904 0.95153 0.88413 1.21767 0.87592 0.95569 0.92272 1.86431 1.38717 1.58605 1.56303 1.22445 0.85036 0.95504 0.91089 0.89196 1.86414 1.20390 1.65037 1.65972 1.23626 0.89976 1.00233 0.97321 0.94794 0.95789 0.91976 0.92829 0.96339 0.91010 0.91444 0.94706 0.75466 0.75350 0.90392 0.95543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.21 8.93 71.98 0.64 -5.56 16 2 C 0.21 11.09 1.83 44.17 0.08 11.18 16 3 H -0.04 -2.34 7.97 -2.38 -0.02 -2.35 16 4 C -0.52 -29.25 8.09 25.60 0.21 -29.05 16 5 H 0.06 3.30 6.95 -2.91 -0.02 3.28 16 6 C 0.01 0.53 5.30 84.66 0.45 0.97 16 7 N -0.92 -54.10 11.32 21.45 0.24 -53.86 16 8 Si 0.96 43.76 29.54 68.60 2.03 45.79 16 9 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 N -0.51 -22.87 5.19 -860.69 -4.47 -27.34 16 13 C 0.05 1.80 4.98 86.45 0.43 2.23 16 14 C -0.08 -2.64 3.32 -9.90 -0.03 -2.67 16 15 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 16 C 0.11 2.90 5.42 71.99 0.39 3.29 16 17 O -0.59 -15.49 13.55 -148.98 -2.02 -17.51 16 18 C 0.12 3.45 4.40 31.49 0.14 3.59 16 19 H 0.09 2.24 8.14 -2.39 -0.02 2.22 16 20 O -0.57 -14.18 11.54 -148.98 -1.72 -15.90 16 21 C 0.02 0.66 5.42 86.45 0.47 1.13 16 22 H 0.03 1.70 8.14 -2.39 -0.02 1.68 16 23 H 0.02 1.11 7.07 -2.39 -0.02 1.09 16 24 H 0.06 3.50 6.07 -2.39 -0.01 3.48 16 25 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 26 H 0.02 0.78 7.52 -2.39 -0.02 0.77 16 27 H 0.07 2.84 7.70 -2.39 -0.02 2.82 16 28 H 0.07 1.62 7.69 -2.38 -0.02 1.60 16 29 H 0.03 1.04 7.91 -2.39 -0.02 1.02 16 30 H 0.40 6.24 9.12 -74.06 -0.68 5.57 16 31 H 0.40 6.61 9.11 -74.06 -0.67 5.93 16 32 H 0.08 2.97 7.42 -2.39 -0.02 2.95 16 33 H 0.03 1.12 7.91 -2.39 -0.02 1.10 16 Total: -1.00 -66.65 265.32 -3.40 -70.05 By element: Atomic # 1 Polarization: 13.88 SS G_CDS: -0.24 Total: 13.65 kcal Atomic # 6 Polarization: -17.66 SS G_CDS: 2.77 Total: -14.88 kcal Atomic # 7 Polarization: -76.97 SS G_CDS: -4.22 Total: -81.20 kcal Atomic # 8 Polarization: -29.67 SS G_CDS: -3.74 Total: -33.41 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -66.65 -3.40 -70.05 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307150639.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.999 kcal (2) G-P(sol) polarization free energy of solvation -66.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.051 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds