Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46833 * 2 1 4 4 N 1.46503 * 109.47122 * 119.99742 * 2 1 3 5 5 C 1.36938 * 119.99660 * 177.80458 * 4 2 1 6 6 H 1.08005 * 119.99513 * 172.92736 * 5 4 2 7 7 C 1.38808 * 120.00367 * 352.93310 * 5 4 2 8 8 N 1.31619 * 119.99732 * 341.22574 * 7 5 4 9 9 Si 1.86800 * 120.00076 * 161.23191 * 7 5 4 10 10 H 1.48500 * 109.47168 * 59.99904 * 9 7 5 11 11 H 1.48501 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47126 * 299.99375 * 9 7 5 13 13 C 1.46499 * 120.00077 * 357.53136 * 4 2 1 14 14 C 1.53000 * 109.47350 * 263.78418 * 13 4 2 15 15 O 1.43752 * 109.63426 * 60.80143 * 14 13 4 16 16 C 1.44780 * 104.81659 * 215.80986 * 15 14 13 17 17 C 1.54906 * 101.72185 * 36.10659 * 16 15 14 18 18 O 1.43370 * 109.62708 * 301.44290 * 14 13 4 19 19 H 1.08994 * 109.47136 * 297.71275 * 1 2 3 20 20 H 1.08994 * 109.46961 * 57.71279 * 1 2 3 21 21 H 1.09003 * 109.46471 * 177.71432 * 1 2 3 22 22 H 1.08999 * 109.47498 * 240.00240 * 2 1 3 23 23 H 1.09001 * 109.47212 * 182.25369 * 3 2 1 24 24 H 1.09002 * 109.47450 * 302.25505 * 3 2 1 25 25 H 1.09001 * 109.47190 * 62.25849 * 3 2 1 26 26 H 0.96996 * 120.00064 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.46739 * 23.77958 * 13 4 2 28 28 H 1.08996 * 109.46953 * 143.77887 * 13 4 2 29 29 H 1.08993 * 109.62777 * 181.05245 * 14 13 4 30 30 H 1.08997 * 110.97920 * 277.99345 * 16 15 14 31 31 H 1.09008 * 111.00504 * 154.22869 * 16 15 14 32 32 H 1.08999 * 110.69525 * 206.03970 * 17 16 15 33 33 H 1.09008 * 110.84360 * 82.90186 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.3639 -0.8551 1.3904 6 1 3.7294 -1.2604 2.3224 7 6 4.2581 -0.5009 0.3895 8 7 3.8376 -0.3631 -0.8500 9 14 6.0583 -0.2201 0.8018 10 1 6.6347 -1.4631 1.3744 11 1 6.7978 0.1447 -0.4332 12 1 6.1735 0.8808 1.7916 13 6 1.0675 -1.1998 2.1876 14 6 0.9134 -0.1797 3.3174 15 8 0.4085 1.0570 2.7861 16 6 1.0659 2.0885 3.5606 17 6 2.4701 1.4718 3.7784 18 8 2.1897 0.0648 3.9230 19 1 -0.3633 0.4779 0.9097 20 1 -0.3633 0.5489 -0.8687 21 1 -0.3632 -1.0269 -0.0410 22 1 1.8935 -0.5138 -0.8900 23 1 3.1293 1.4429 -0.0404 24 1 1.6440 1.9680 -0.8691 25 1 1.7101 1.9445 0.9095 26 1 4.4624 -0.1160 -1.5495 27 1 0.1005 -1.3644 1.7123 28 1 1.4369 -2.1407 2.5954 29 1 0.2206 -0.5642 4.0658 30 1 0.5572 2.2464 4.5116 31 1 1.1315 3.0189 2.9963 32 1 2.9286 1.8682 4.6843 33 1 3.1103 1.6502 2.9144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307178476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -48.592984 kcal Electronic energy + Delta-G solvation = -16355.737658 eV Core-core repulsion = 13804.454347 eV Total energy + Delta-G solvation = -2551.283311 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.61770 -36.25809 -34.20569 -31.74309 -31.01896 -29.02801 -26.66030 -25.47404 -23.40477 -22.63194 -21.27882 -18.78514 -16.72762 -16.63456 -15.87957 -15.15578 -14.63452 -13.98365 -13.66228 -13.34578 -13.08005 -12.74440 -12.17056 -11.97140 -11.46100 -11.23851 -11.07412 -10.93975 -10.74762 -10.57644 -10.44971 -10.15087 -9.67990 -9.56348 -9.42397 -9.24193 -8.84178 -8.18278 -6.61517 -5.44495 -2.91571 3.46930 3.53124 3.54704 4.10312 4.62134 4.78934 5.18211 5.35932 5.42472 5.59817 5.63379 5.87498 6.00177 6.14852 6.37957 6.41819 6.44303 6.56435 6.58656 6.64110 6.84825 7.08379 7.15211 7.24225 7.43134 7.82327 7.89121 8.15839 8.20310 8.59991 9.44558 10.07461 10.51018 11.47041 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.015496 C = 0.012590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.414413 B = 1806.441822 C = 2223.498587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.187 3.813 3 C -0.137 4.137 4 N -0.582 5.582 5 C -0.218 4.218 6 H 0.075 0.925 7 C -0.013 4.013 8 N -0.907 5.907 9 Si 0.894 3.106 10 H -0.287 1.287 11 H -0.294 1.294 12 H -0.290 1.290 13 C 0.130 3.870 14 C 0.210 3.790 15 O -0.364 6.364 16 C 0.019 3.981 17 C 0.033 3.967 18 O -0.372 6.372 19 H 0.060 0.940 20 H 0.038 0.962 21 H 0.036 0.964 22 H 0.098 0.902 23 H 0.073 0.927 24 H 0.013 0.987 25 H 0.022 0.978 26 H 0.248 0.752 27 H 0.065 0.935 28 H 0.057 0.943 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.095 0.905 32 H 0.078 0.922 33 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.758 3.647 6.434 9.373 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.082 3.918 3 C -0.196 4.196 4 N -0.303 5.303 5 C -0.348 4.348 6 H 0.093 0.907 7 C -0.208 4.208 8 N -0.556 5.556 9 Si 0.725 3.275 10 H -0.214 1.214 11 H -0.220 1.220 12 H -0.217 1.217 13 C 0.001 3.999 14 C 0.111 3.889 15 O -0.284 6.284 16 C -0.058 4.058 17 C -0.043 4.043 18 O -0.292 6.292 19 H 0.079 0.921 20 H 0.057 0.943 21 H 0.055 0.945 22 H 0.115 0.885 23 H 0.092 0.908 24 H 0.032 0.968 25 H 0.041 0.959 26 H 0.059 0.941 27 H 0.083 0.917 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.077 0.923 31 H 0.114 0.886 32 H 0.096 0.904 33 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -5.676 3.525 6.178 9.100 hybrid contribution 0.998 0.525 0.376 1.189 sum -4.678 4.050 6.554 9.013 Atomic orbital electron populations 1.22395 0.99984 0.99327 1.00757 1.20620 0.87554 0.92380 0.91257 1.22305 1.03430 0.97468 0.96352 1.44039 1.01914 1.64264 1.20082 1.19256 0.81556 1.35341 0.98659 0.90739 1.24610 0.97214 1.03771 0.95173 1.70041 1.32688 1.53885 0.98950 0.86450 0.86056 0.78201 0.76749 1.21351 1.21994 1.21708 1.21329 0.95046 0.93774 0.89727 1.25132 0.82079 0.88043 0.93603 1.89195 1.65672 1.14985 1.58516 1.24180 0.92293 0.93562 0.95778 1.23971 0.96873 0.81329 1.02153 1.88799 1.37253 1.24340 1.78820 0.92068 0.94296 0.94493 0.88456 0.90824 0.96832 0.95904 0.94145 0.91689 0.92466 0.92634 0.92339 0.88648 0.90378 0.89859 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.43 7.83 37.16 0.29 -3.14 16 2 C 0.19 4.53 2.73 -67.92 -0.19 4.34 16 3 C -0.14 -3.27 8.66 37.16 0.32 -2.95 16 4 N -0.58 -14.30 2.57 -165.66 -0.43 -14.73 16 5 C -0.22 -5.90 8.60 -15.06 -0.13 -6.02 16 6 H 0.07 2.06 7.59 -52.48 -0.40 1.66 16 7 C -0.01 -0.35 3.95 -17.43 -0.07 -0.42 16 8 N -0.91 -25.73 8.66 55.49 0.48 -25.25 16 9 Si 0.89 22.14 29.59 -169.99 -5.03 17.11 16 10 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 11 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 13 C 0.13 2.73 5.42 -4.04 -0.02 2.71 16 14 C 0.21 4.02 4.34 37.16 0.16 4.18 16 15 O -0.36 -6.87 7.78 -59.04 -0.46 -7.33 16 16 C 0.02 0.30 7.40 38.16 0.28 0.58 16 17 C 0.03 0.60 8.07 38.16 0.31 0.90 16 18 O -0.37 -7.63 9.90 -59.04 -0.58 -8.21 16 19 H 0.06 1.24 5.15 -51.93 -0.27 0.97 16 20 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 21 H 0.04 0.72 7.20 -51.93 -0.37 0.34 16 22 H 0.10 2.72 5.98 -51.93 -0.31 2.40 16 23 H 0.07 1.97 5.26 -51.93 -0.27 1.69 16 24 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 25 H 0.02 0.51 6.51 -51.93 -0.34 0.17 16 26 H 0.25 6.95 8.31 -40.82 -0.34 6.61 16 27 H 0.07 1.27 5.49 -51.93 -0.29 0.99 16 28 H 0.06 1.20 8.09 -51.93 -0.42 0.78 16 29 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.10 1.38 8.14 -51.92 -0.42 0.96 16 32 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 33 H 0.08 1.73 8.14 -51.92 -0.42 1.31 16 LS Contribution 253.42 15.07 3.82 3.82 Total: -1.00 -29.13 253.42 -6.00 -35.13 By element: Atomic # 1 Polarization: 4.04 SS G_CDS: -4.76 Total: -0.72 kcal Atomic # 6 Polarization: -0.78 SS G_CDS: 0.96 Total: 0.18 kcal Atomic # 7 Polarization: -40.03 SS G_CDS: 0.05 Total: -39.98 kcal Atomic # 8 Polarization: -14.50 SS G_CDS: -1.04 Total: -15.54 kcal Atomic # 14 Polarization: 22.14 SS G_CDS: -5.03 Total: 17.11 kcal Total LS contribution 3.82 Total: 3.82 kcal Total: -29.13 -6.00 -35.13 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307178476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.465 kcal (2) G-P(sol) polarization free energy of solvation -29.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.590 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds