Wall clock time and date at job start Mon Mar 30 2020 03:01:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53002 * 109.46833 * 2 1 4 4 N 1.46503 * 109.47122 * 119.99742 * 2 1 3 5 5 C 1.36938 * 119.99660 * 177.80458 * 4 2 1 6 6 H 1.08005 * 119.99513 * 172.92736 * 5 4 2 7 7 C 1.38808 * 120.00367 * 352.93310 * 5 4 2 8 8 N 1.31619 * 119.99732 * 341.22574 * 7 5 4 9 9 Si 1.86800 * 120.00076 * 161.23191 * 7 5 4 10 10 H 1.48500 * 109.47168 * 59.99904 * 9 7 5 11 11 H 1.48501 * 109.46857 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47126 * 299.99375 * 9 7 5 13 13 C 1.46499 * 120.00077 * 357.53136 * 4 2 1 14 14 C 1.53000 * 109.47350 * 263.78418 * 13 4 2 15 15 O 1.43752 * 109.63426 * 60.80143 * 14 13 4 16 16 C 1.44780 * 104.81659 * 215.80986 * 15 14 13 17 17 C 1.54906 * 101.72185 * 36.10659 * 16 15 14 18 18 O 1.43370 * 109.62708 * 301.44290 * 14 13 4 19 19 H 1.08994 * 109.47136 * 297.71275 * 1 2 3 20 20 H 1.08994 * 109.46961 * 57.71279 * 1 2 3 21 21 H 1.09003 * 109.46471 * 177.71432 * 1 2 3 22 22 H 1.08999 * 109.47498 * 240.00240 * 2 1 3 23 23 H 1.09001 * 109.47212 * 182.25369 * 3 2 1 24 24 H 1.09002 * 109.47450 * 302.25505 * 3 2 1 25 25 H 1.09001 * 109.47190 * 62.25849 * 3 2 1 26 26 H 0.96996 * 120.00064 * 180.02562 * 8 7 5 27 27 H 1.08999 * 109.46739 * 23.77958 * 13 4 2 28 28 H 1.08996 * 109.46953 * 143.77887 * 13 4 2 29 29 H 1.08993 * 109.62777 * 181.05245 * 14 13 4 30 30 H 1.08997 * 110.97920 * 277.99345 * 16 15 14 31 31 H 1.09008 * 111.00504 * 154.22869 * 16 15 14 32 32 H 1.08999 * 110.69525 * 206.03970 * 17 16 15 33 33 H 1.09008 * 110.84360 * 82.90186 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 3.3639 -0.8551 1.3904 6 1 3.7294 -1.2604 2.3224 7 6 4.2581 -0.5009 0.3895 8 7 3.8376 -0.3631 -0.8500 9 14 6.0583 -0.2201 0.8018 10 1 6.6347 -1.4631 1.3744 11 1 6.7978 0.1447 -0.4332 12 1 6.1735 0.8808 1.7916 13 6 1.0675 -1.1998 2.1876 14 6 0.9134 -0.1797 3.3174 15 8 0.4085 1.0570 2.7861 16 6 1.0659 2.0885 3.5606 17 6 2.4701 1.4718 3.7784 18 8 2.1897 0.0648 3.9230 19 1 -0.3633 0.4779 0.9097 20 1 -0.3633 0.5489 -0.8687 21 1 -0.3632 -1.0269 -0.0410 22 1 1.8935 -0.5138 -0.8900 23 1 3.1293 1.4429 -0.0404 24 1 1.6440 1.9680 -0.8691 25 1 1.7101 1.9445 0.9095 26 1 4.4624 -0.1160 -1.5495 27 1 0.1005 -1.3644 1.7123 28 1 1.4369 -2.1407 2.5954 29 1 0.2206 -0.5642 4.0658 30 1 0.5572 2.2464 4.5116 31 1 1.1315 3.0189 2.9963 32 1 2.9286 1.8682 4.6843 33 1 3.1103 1.6502 2.9144 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307178476.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:01:18 Heat of formation + Delta-G solvation = -67.091959 kcal Electronic energy + Delta-G solvation = -16356.539833 eV Core-core repulsion = 13804.454347 eV Total energy + Delta-G solvation = -2552.085486 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -41.07706 -38.11188 -35.66811 -33.67631 -32.77513 -30.64829 -28.37091 -27.24460 -25.35033 -23.98074 -22.91245 -20.66580 -18.61034 -18.09420 -17.37900 -16.74689 -16.47931 -15.68783 -15.43447 -15.11960 -14.72545 -14.20232 -13.76751 -13.48145 -13.32635 -13.04793 -12.96619 -12.74862 -12.53922 -12.22585 -12.10914 -12.06304 -11.55677 -11.38549 -11.21391 -10.85188 -10.48494 -10.16128 -8.60115 -7.51748 -5.00029 1.47247 1.49329 1.55044 2.60198 2.73890 3.33402 3.46992 3.72446 3.89123 4.15498 4.31251 4.54257 4.55704 4.61336 4.74662 4.80631 4.84630 4.93976 4.97918 5.14986 5.21052 5.29110 5.32334 5.48537 5.52010 5.77061 6.17055 6.20554 6.39048 6.57127 7.37181 8.10909 8.48162 9.35910 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.029177 B = 0.015496 C = 0.012590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.414413 B = 1806.441822 C = 2223.498587 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.186 3.814 3 C -0.123 4.123 4 N -0.592 5.592 5 C -0.213 4.213 6 H 0.064 0.936 7 C -0.056 4.056 8 N -0.926 5.926 9 Si 0.942 3.058 10 H -0.286 1.286 11 H -0.299 1.299 12 H -0.288 1.288 13 C 0.121 3.879 14 C 0.213 3.787 15 O -0.379 6.379 16 C 0.023 3.977 17 C 0.029 3.971 18 O -0.395 6.395 19 H 0.069 0.931 20 H 0.051 0.949 21 H 0.044 0.956 22 H 0.059 0.941 23 H 0.042 0.958 24 H 0.020 0.980 25 H 0.031 0.969 26 H 0.239 0.761 27 H 0.081 0.919 28 H 0.052 0.948 29 H 0.089 0.911 30 H 0.093 0.907 31 H 0.107 0.893 32 H 0.109 0.891 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.995 4.309 7.845 11.360 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.081 3.919 3 C -0.182 4.182 4 N -0.314 5.314 5 C -0.344 4.344 6 H 0.082 0.918 7 C -0.249 4.249 8 N -0.576 5.576 9 Si 0.773 3.227 10 H -0.212 1.212 11 H -0.226 1.226 12 H -0.215 1.215 13 C -0.006 4.006 14 C 0.115 3.885 15 O -0.300 6.300 16 C -0.053 4.053 17 C -0.048 4.048 18 O -0.316 6.316 19 H 0.087 0.913 20 H 0.070 0.930 21 H 0.063 0.937 22 H 0.076 0.924 23 H 0.061 0.939 24 H 0.039 0.961 25 H 0.050 0.950 26 H 0.049 0.951 27 H 0.099 0.901 28 H 0.071 0.929 29 H 0.106 0.894 30 H 0.111 0.889 31 H 0.125 0.875 32 H 0.127 0.873 33 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -6.933 4.185 7.621 11.120 hybrid contribution 1.357 0.306 -0.019 1.391 sum -5.576 4.491 7.602 10.442 Atomic orbital electron populations 1.22217 0.96863 1.00217 1.01758 1.20424 0.89957 0.91766 0.89773 1.22114 1.01287 0.97775 0.97035 1.44150 1.01669 1.64535 1.21013 1.19295 0.83046 1.34289 0.97769 0.91808 1.25103 0.99872 1.04658 0.95260 1.70240 1.32965 1.55134 0.99289 0.85689 0.82971 0.77931 0.76105 1.21210 1.22586 1.21495 1.21551 0.94872 0.94267 0.89877 1.24991 0.82397 0.87789 0.93286 1.89150 1.65747 1.15458 1.59632 1.24365 0.90744 0.92915 0.97271 1.24043 0.97949 0.80661 1.02099 1.88782 1.38141 1.25933 1.78707 0.91266 0.92980 0.93699 0.92377 0.93944 0.96053 0.95006 0.95069 0.90123 0.92935 0.89363 0.88863 0.87470 0.87261 0.93696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 7.83 71.98 0.56 -5.41 16 2 C 0.19 8.94 2.73 44.99 0.12 9.07 16 3 C -0.12 -5.87 8.66 71.98 0.62 -5.24 16 4 N -0.59 -28.86 2.57 -678.02 -1.74 -30.60 16 5 C -0.21 -11.59 8.60 84.03 0.72 -10.87 16 6 H 0.06 3.55 7.59 -2.91 -0.02 3.53 16 7 C -0.06 -3.12 3.95 84.86 0.34 -2.79 16 8 N -0.93 -53.72 8.66 21.65 0.19 -53.53 16 9 Si 0.94 46.20 29.59 68.60 2.03 48.23 16 10 H -0.29 -13.81 7.11 99.48 0.71 -13.10 16 11 H -0.30 -14.84 7.11 99.48 0.71 -14.13 16 12 H -0.29 -13.87 7.11 99.48 0.71 -13.17 16 13 C 0.12 4.91 5.42 86.38 0.47 5.37 16 14 C 0.21 7.60 4.34 71.98 0.31 7.91 16 15 O -0.38 -13.17 7.78 -126.22 -0.98 -14.15 16 16 C 0.02 0.65 7.40 72.63 0.54 1.19 16 17 C 0.03 0.97 8.07 72.63 0.59 1.56 16 18 O -0.39 -15.45 9.90 -126.22 -1.25 -16.70 16 19 H 0.07 2.60 5.15 -2.39 -0.01 2.59 16 20 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 21 H 0.04 1.65 7.20 -2.39 -0.02 1.64 16 22 H 0.06 3.30 5.98 -2.39 -0.01 3.29 16 23 H 0.04 2.28 5.26 -2.39 -0.01 2.27 16 24 H 0.02 0.93 8.14 -2.39 -0.02 0.91 16 25 H 0.03 1.41 6.51 -2.39 -0.02 1.39 16 26 H 0.24 13.79 8.31 -92.71 -0.77 13.02 16 27 H 0.08 2.97 5.49 -2.39 -0.01 2.96 16 28 H 0.05 2.14 8.09 -2.39 -0.02 2.13 16 29 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 30 H 0.09 2.03 8.14 -2.39 -0.02 2.02 16 31 H 0.11 2.75 8.14 -2.38 -0.02 2.73 16 32 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 33 H 0.04 1.85 8.14 -2.38 -0.02 1.83 16 Total: -1.00 -62.26 253.42 3.60 -58.66 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: 1.09 Total: 7.28 kcal Atomic # 6 Polarization: -3.47 SS G_CDS: 4.27 Total: 0.80 kcal Atomic # 7 Polarization: -82.57 SS G_CDS: -1.56 Total: -84.13 kcal Atomic # 8 Polarization: -28.62 SS G_CDS: -2.23 Total: -30.85 kcal Atomic # 14 Polarization: 46.20 SS G_CDS: 2.03 Total: 48.23 kcal Total: -62.26 3.60 -58.66 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307178476.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.431 kcal (2) G-P(sol) polarization free energy of solvation -62.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.661 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds