Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47354 * 2 1 4 4 C 1.50701 * 109.47030 * 240.00169 * 2 1 3 5 5 H 1.07997 * 120.00187 * 240.00626 * 4 2 1 6 6 C 1.37878 * 119.99708 * 59.99950 * 4 2 1 7 7 N 1.31511 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99711 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47423 * 60.00132 * 8 6 4 10 10 H 1.48497 * 109.46970 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46911 * 299.99914 * 8 6 4 12 12 C 1.52996 * 109.46946 * 120.00422 * 2 1 3 13 13 C 1.53003 * 109.46782 * 174.47689 * 12 2 1 14 14 H 1.09003 * 109.54177 * 306.37926 * 13 12 2 15 15 C 1.53097 * 109.50371 * 186.27343 * 13 12 2 16 16 O 1.43017 * 109.25846 * 183.21220 * 15 13 12 17 17 C 1.43021 * 113.73561 * 58.67238 * 16 15 13 18 18 C 1.53096 * 109.25746 * 301.32827 * 17 16 15 19 19 N 1.47010 * 109.50810 * 66.49235 * 13 12 2 20 20 H 1.09003 * 109.47080 * 294.91816 * 1 2 3 21 21 H 1.09001 * 109.47572 * 54.92003 * 1 2 3 22 22 H 1.08993 * 109.47406 * 174.91875 * 1 2 3 23 23 H 0.96699 * 114.00039 * 179.97438 * 3 2 1 24 24 H 0.97003 * 120.00216 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47513 * 54.47616 * 12 2 1 26 26 H 1.09000 * 109.47294 * 294.46970 * 12 2 1 27 27 H 1.08995 * 109.50874 * 63.28568 * 15 13 12 28 28 H 1.08995 * 109.50894 * 303.15043 * 15 13 12 29 29 H 1.09000 * 109.50609 * 181.39378 * 17 16 15 30 30 H 1.09002 * 109.54251 * 61.28270 * 17 16 15 31 31 H 1.08997 * 109.50833 * 296.91276 * 18 17 16 32 32 H 1.09000 * 109.50652 * 176.78193 * 18 17 16 33 33 H 1.00903 * 111.00273 * 54.77209 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 6 2.0399 -0.7213 1.2492 13 6 3.5636 -0.8427 1.1816 14 1 3.8508 -1.3101 0.2397 15 6 4.0605 -1.6988 2.3496 16 8 5.4896 -1.7468 2.3247 17 6 6.1105 -0.4612 2.4095 18 6 5.6343 0.4074 1.2422 19 7 4.1670 0.4950 1.2699 20 1 -0.3633 0.4330 0.9320 21 1 -0.3634 0.5906 -0.8410 22 1 -0.3634 -1.0235 -0.0910 23 1 2.9703 1.4236 0.0004 24 1 0.7094 1.1620 -3.4844 25 1 1.5981 -1.7165 1.3000 26 1 1.7597 -0.1536 2.1364 27 1 3.6608 -2.7085 2.2566 28 1 3.7274 -1.2600 3.2900 29 1 7.1933 -0.5759 2.3599 30 1 5.8376 0.0140 3.3518 31 1 5.9546 -0.0400 0.3013 32 1 6.0603 1.4065 1.3345 33 1 3.8493 0.9813 2.0949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307186723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -92.480992 kcal Electronic energy + Delta-G solvation = -15686.562758 eV Core-core repulsion = 13133.376320 eV Total energy + Delta-G solvation = -2553.186437 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.43261 -36.53736 -33.96029 -31.95905 -31.86242 -29.45562 -26.41027 -25.30652 -24.90946 -22.32657 -20.51153 -19.27417 -16.91052 -15.91530 -15.82271 -15.07277 -14.76803 -14.59686 -14.45377 -13.95861 -12.95019 -12.46498 -12.23201 -12.06271 -11.47824 -11.22261 -10.98330 -10.83029 -10.71998 -10.61230 -10.51745 -10.34544 -10.09347 -9.89307 -9.80604 -8.76126 -8.36720 -7.84470 -7.64339 -5.81266 -3.98893 3.36019 3.41142 3.43330 4.00746 4.48426 4.52783 5.01896 5.16468 5.31099 5.41281 5.44066 5.52215 5.75044 5.79327 5.99307 6.13508 6.17389 6.47368 6.63231 6.82895 6.84658 7.09269 7.21948 7.27545 7.37927 7.73965 7.80305 7.99170 8.20884 8.46418 9.00112 9.67542 9.99553 11.18723 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.010683 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.881566 B = 2620.267286 C = 2940.966692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.259 3.741 3 O -0.574 6.574 4 C -0.550 4.550 5 H 0.052 0.948 6 C 0.080 3.920 7 N -0.859 5.859 8 Si 0.881 3.119 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.278 1.278 12 C -0.131 4.131 13 C 0.059 3.941 14 H 0.107 0.893 15 C 0.025 3.975 16 O -0.386 6.386 17 C 0.022 3.978 18 C 0.022 3.978 19 N -0.662 5.662 20 H 0.009 0.991 21 H 0.086 0.914 22 H 0.035 0.965 23 H 0.364 0.636 24 H 0.256 0.744 25 H 0.060 0.940 26 H 0.042 0.958 27 H 0.095 0.905 28 H 0.043 0.957 29 H 0.092 0.908 30 H 0.044 0.956 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.336 0.664 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.755 -1.939 8.600 11.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.219 3.781 3 O -0.384 6.384 4 C -0.588 4.588 5 H 0.070 0.930 6 C -0.124 4.124 7 N -0.495 5.495 8 Si 0.709 3.291 9 H -0.205 1.205 10 H -0.214 1.214 11 H -0.204 1.204 12 C -0.169 4.169 13 C -0.050 4.050 14 H 0.125 0.875 15 C -0.054 4.054 16 O -0.305 6.305 17 C -0.057 4.057 18 C -0.108 4.108 19 N -0.293 5.293 20 H 0.028 0.972 21 H 0.105 0.895 22 H 0.054 0.946 23 H 0.215 0.785 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.061 0.939 27 H 0.113 0.887 28 H 0.061 0.939 29 H 0.110 0.890 30 H 0.063 0.937 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 6.059 -1.710 7.757 9.990 hybrid contribution 1.007 -0.839 0.051 1.312 sum 7.066 -2.548 7.808 10.834 Atomic orbital electron populations 1.21628 0.96923 0.99613 1.00006 1.18402 0.90592 0.80454 0.88618 1.86338 1.26890 1.28234 1.96903 1.21551 1.33001 1.12907 0.91353 0.93017 1.24955 0.94455 0.94443 0.98588 1.70007 1.35166 1.21693 1.22677 0.86872 0.79275 0.79833 0.83104 1.20458 1.21430 1.20412 1.22337 0.92385 1.00963 1.01225 1.22385 0.96012 0.87966 0.98656 0.87501 1.23472 0.80820 1.02502 0.98577 1.88009 1.19583 1.27941 1.94974 1.23263 0.98393 0.85802 0.98196 1.22658 0.89444 0.99921 0.98815 1.60581 1.05247 1.18431 1.45051 0.97201 0.89540 0.94595 0.78461 0.93363 0.92180 0.93944 0.88706 0.93891 0.89019 0.93737 0.89829 0.90026 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.10 8.54 37.16 0.32 -2.78 16 2 C 0.26 6.43 0.75 -91.77 -0.07 6.36 16 3 O -0.57 -15.11 12.20 -35.23 -0.43 -15.54 16 4 C -0.55 -14.81 7.40 -34.44 -0.25 -15.07 16 5 H 0.05 1.37 6.34 -52.49 -0.33 1.04 16 6 C 0.08 2.24 5.24 -17.82 -0.09 2.14 16 7 N -0.86 -25.07 10.93 55.43 0.61 -24.46 16 8 Si 0.88 21.41 29.54 -169.99 -5.02 16.39 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 C -0.13 -2.62 4.17 -26.73 -0.11 -2.74 16 13 C 0.06 1.07 2.39 -67.60 -0.16 0.91 16 14 H 0.11 2.26 6.08 -51.93 -0.32 1.94 16 15 C 0.02 0.38 6.29 37.21 0.23 0.62 16 16 O -0.39 -6.16 10.83 -35.23 -0.38 -6.54 16 17 C 0.02 0.29 7.01 37.21 0.26 0.55 16 18 C 0.02 0.30 6.76 -3.71 -0.03 0.28 16 19 N -0.66 -11.04 3.63 -106.45 -0.39 -11.42 16 20 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 21 H 0.09 2.41 6.22 -51.93 -0.32 2.08 16 22 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.36 8.97 6.05 45.56 0.28 9.24 16 24 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 25 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 26 H 0.04 0.80 8.13 -51.93 -0.42 0.38 16 27 H 0.09 1.40 8.14 -51.93 -0.42 0.98 16 28 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 29 H 0.09 1.00 8.14 -51.93 -0.42 0.57 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.29 8.14 -51.93 -0.42 0.86 16 32 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 33 H 0.34 5.17 8.79 -39.29 -0.35 4.82 16 LS Contribution 260.20 15.07 3.92 3.92 Total: -1.00 -30.07 260.20 -6.00 -36.07 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -4.40 Total: 11.32 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 0.10 Total: -9.73 kcal Atomic # 7 Polarization: -36.11 SS G_CDS: 0.22 Total: -35.89 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.81 Total: -22.08 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 3.92 Total: 3.92 kcal Total: -30.07 -6.00 -36.07 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.409 kcal (2) G-P(sol) polarization free energy of solvation -30.075 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.483 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.072 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.481 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds