Wall clock time and date at job start Mon Mar 30 2020 02:46:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 O 1.42900 * 109.47354 * 2 1 4 4 C 1.50701 * 109.47030 * 240.00169 * 2 1 3 5 5 H 1.07997 * 120.00187 * 240.00626 * 4 2 1 6 6 C 1.37878 * 119.99708 * 59.99950 * 4 2 1 7 7 N 1.31511 * 120.00389 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99711 * 180.02562 * 6 4 2 9 9 H 1.48494 * 109.47423 * 60.00132 * 8 6 4 10 10 H 1.48497 * 109.46970 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.46911 * 299.99914 * 8 6 4 12 12 C 1.52996 * 109.46946 * 120.00422 * 2 1 3 13 13 C 1.53003 * 109.46782 * 174.47689 * 12 2 1 14 14 H 1.09003 * 109.54177 * 306.37926 * 13 12 2 15 15 C 1.53097 * 109.50371 * 186.27343 * 13 12 2 16 16 O 1.43017 * 109.25846 * 183.21220 * 15 13 12 17 17 C 1.43021 * 113.73561 * 58.67238 * 16 15 13 18 18 C 1.53096 * 109.25746 * 301.32827 * 17 16 15 19 19 N 1.47010 * 109.50810 * 66.49235 * 13 12 2 20 20 H 1.09003 * 109.47080 * 294.91816 * 1 2 3 21 21 H 1.09001 * 109.47572 * 54.92003 * 1 2 3 22 22 H 1.08993 * 109.47406 * 174.91875 * 1 2 3 23 23 H 0.96699 * 114.00039 * 179.97438 * 3 2 1 24 24 H 0.97003 * 120.00216 * 179.97438 * 7 6 4 25 25 H 1.09001 * 109.47513 * 54.47616 * 12 2 1 26 26 H 1.09000 * 109.47294 * 294.46970 * 12 2 1 27 27 H 1.08995 * 109.50874 * 63.28568 * 15 13 12 28 28 H 1.08995 * 109.50894 * 303.15043 * 15 13 12 29 29 H 1.09000 * 109.50609 * 181.39378 * 17 16 15 30 30 H 1.09002 * 109.54251 * 61.28270 * 17 16 15 31 31 H 1.08997 * 109.50833 * 296.91276 * 18 17 16 32 32 H 1.09000 * 109.50652 * 176.78193 * 18 17 16 33 33 H 1.00903 * 111.00273 * 54.77209 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6531 -1.5885 -1.1315 6 6 1.6991 -0.2392 -2.4827 7 7 0.9435 0.8303 -2.6034 8 14 2.3212 -1.1202 -4.0080 9 1 1.8257 -2.5201 -4.0079 10 1 1.8268 -0.4197 -5.2205 11 1 3.8063 -1.1208 -4.0082 12 6 2.0399 -0.7213 1.2492 13 6 3.5636 -0.8427 1.1816 14 1 3.8508 -1.3101 0.2397 15 6 4.0605 -1.6988 2.3496 16 8 5.4896 -1.7468 2.3247 17 6 6.1105 -0.4612 2.4095 18 6 5.6343 0.4074 1.2422 19 7 4.1670 0.4950 1.2699 20 1 -0.3633 0.4330 0.9320 21 1 -0.3634 0.5906 -0.8410 22 1 -0.3634 -1.0235 -0.0910 23 1 2.9703 1.4236 0.0004 24 1 0.7094 1.1620 -3.4844 25 1 1.5981 -1.7165 1.3000 26 1 1.7597 -0.1536 2.1364 27 1 3.6608 -2.7085 2.2566 28 1 3.7274 -1.2600 3.2900 29 1 7.1933 -0.5759 2.3599 30 1 5.8376 0.0140 3.3518 31 1 5.9546 -0.0400 0.3013 32 1 6.0603 1.4065 1.3345 33 1 3.8493 0.9813 2.0949 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307186723.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:49 Heat of formation + Delta-G solvation = -115.472551 kcal Electronic energy + Delta-G solvation = -15687.559746 eV Core-core repulsion = 13133.376320 eV Total energy + Delta-G solvation = -2554.183426 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.70670 -38.28280 -35.36297 -34.03269 -33.32110 -31.21366 -27.85081 -27.15342 -26.48868 -23.60973 -21.84099 -21.18361 -18.88122 -17.16800 -17.08057 -16.58259 -16.40124 -16.09473 -15.94272 -15.56003 -14.77365 -14.18270 -13.63226 -13.41443 -13.18810 -12.97427 -12.74742 -12.61634 -12.47202 -12.34677 -12.02773 -11.91807 -11.86006 -11.69962 -11.09096 -10.63647 -10.46967 -9.81362 -8.98316 -7.91858 -6.14746 1.42316 1.42924 1.49685 2.47000 2.90675 3.24519 3.31584 3.82234 4.08564 4.12341 4.27234 4.32736 4.46433 4.56280 4.71110 4.72686 4.82669 4.91063 5.02605 5.08993 5.21117 5.26406 5.37632 5.70321 5.91251 6.07469 6.13936 6.24880 6.39597 6.53893 6.92380 7.55019 8.03722 9.06550 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.032745 B = 0.010683 C = 0.009518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 854.881566 B = 2620.267286 C = 2940.966692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.246 3.754 3 O -0.591 6.591 4 C -0.553 4.553 5 H 0.051 0.949 6 C 0.030 3.970 7 N -0.891 5.891 8 Si 0.940 3.060 9 H -0.272 1.272 10 H -0.289 1.289 11 H -0.276 1.276 12 C -0.121 4.121 13 C 0.068 3.932 14 H 0.071 0.929 15 C 0.033 3.967 16 O -0.404 6.404 17 C 0.023 3.977 18 C 0.023 3.977 19 N -0.679 5.679 20 H 0.026 0.974 21 H 0.053 0.947 22 H 0.041 0.959 23 H 0.367 0.633 24 H 0.253 0.747 25 H 0.065 0.935 26 H 0.056 0.944 27 H 0.100 0.900 28 H 0.062 0.938 29 H 0.114 0.886 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.106 0.894 33 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.862 -2.470 9.800 12.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.207 3.793 3 O -0.401 6.401 4 C -0.591 4.591 5 H 0.069 0.931 6 C -0.171 4.171 7 N -0.529 5.529 8 Si 0.766 3.234 9 H -0.198 1.198 10 H -0.215 1.215 11 H -0.202 1.202 12 C -0.159 4.159 13 C -0.042 4.042 14 H 0.089 0.911 15 C -0.045 4.045 16 O -0.323 6.323 17 C -0.055 4.055 18 C -0.106 4.106 19 N -0.311 5.311 20 H 0.045 0.955 21 H 0.072 0.928 22 H 0.060 0.940 23 H 0.219 0.781 24 H 0.062 0.938 25 H 0.084 0.916 26 H 0.075 0.925 27 H 0.118 0.882 28 H 0.080 0.920 29 H 0.132 0.868 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.124 0.876 33 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.182 -2.252 8.967 11.707 hybrid contribution 0.685 -0.638 -0.298 0.982 sum 7.867 -2.889 8.670 12.058 Atomic orbital electron populations 1.21571 0.97447 0.99486 0.99454 1.18559 0.90429 0.80202 0.90142 1.86312 1.27480 1.29245 1.97095 1.21899 1.32155 1.12677 0.92414 0.93135 1.25660 0.94880 0.95199 1.01410 1.70161 1.36629 1.23218 1.22898 0.85933 0.78643 0.78937 0.79842 1.19765 1.21501 1.20198 1.22119 0.93867 1.00707 0.99227 1.22073 0.94728 0.89120 0.98290 0.91058 1.23333 0.80919 1.02304 0.97931 1.87992 1.19559 1.29744 1.95014 1.23417 0.99439 0.84448 0.98237 1.22696 0.87850 1.01531 0.98545 1.60415 1.06973 1.17865 1.45880 0.95454 0.92810 0.93955 0.78062 0.93769 0.91600 0.92493 0.88234 0.92011 0.86814 0.91893 0.91870 0.87591 0.83585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.06 8.54 71.98 0.61 -5.45 16 2 C 0.25 12.13 0.75 -11.54 -0.01 12.12 16 3 O -0.59 -31.03 12.20 -148.98 -1.82 -32.84 16 4 C -0.55 -29.83 7.40 25.60 0.19 -29.64 16 5 H 0.05 2.68 6.34 -2.91 -0.02 2.66 16 6 C 0.03 1.67 5.24 84.66 0.44 2.11 16 7 N -0.89 -52.81 10.93 21.45 0.23 -52.58 16 8 Si 0.94 44.28 29.54 68.60 2.03 46.31 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 11 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 12 C -0.12 -4.68 4.17 30.59 0.13 -4.55 16 13 C 0.07 2.37 2.39 44.93 0.11 2.47 16 14 H 0.07 3.01 6.08 -2.39 -0.01 2.99 16 15 C 0.03 0.96 6.29 72.01 0.45 1.41 16 16 O -0.40 -11.86 10.83 -148.98 -1.61 -13.48 16 17 C 0.02 0.51 7.01 72.01 0.50 1.01 16 18 C 0.02 0.60 6.76 86.31 0.58 1.18 16 19 N -0.68 -21.58 3.63 -490.70 -1.78 -23.37 16 20 H 0.03 1.20 8.14 -2.39 -0.02 1.19 16 21 H 0.05 3.03 6.22 -2.39 -0.01 3.01 16 22 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 23 H 0.37 18.03 6.05 -74.06 -0.45 17.58 16 24 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 25 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 26 H 0.06 2.02 8.13 -2.39 -0.02 2.00 16 27 H 0.10 2.72 8.14 -2.39 -0.02 2.70 16 28 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 32 H 0.11 2.21 8.14 -2.39 -0.02 2.19 16 33 H 0.35 9.84 8.79 -89.69 -0.79 9.05 16 Total: -1.00 -63.77 260.20 -0.06 -63.83 By element: Atomic # 1 Polarization: 31.57 SS G_CDS: -0.13 Total: 31.45 kcal Atomic # 6 Polarization: -22.34 SS G_CDS: 3.02 Total: -19.32 kcal Atomic # 7 Polarization: -74.40 SS G_CDS: -1.55 Total: -75.94 kcal Atomic # 8 Polarization: -42.89 SS G_CDS: -3.43 Total: -46.32 kcal Atomic # 14 Polarization: 44.28 SS G_CDS: 2.03 Total: 46.31 kcal Total: -63.77 -0.06 -63.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186723.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.640 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -115.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.832 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.473 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds