Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47056 * 2 1 4 4 C 1.50709 * 109.47273 * 240.00467 * 2 1 3 5 5 H 1.07993 * 119.99723 * 240.00375 * 4 2 1 6 6 C 1.37877 * 119.99763 * 59.99278 * 4 2 1 7 7 N 1.31520 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47164 * 90.00179 * 8 6 4 10 10 H 1.48497 * 109.47335 * 210.00786 * 8 6 4 11 11 H 1.48507 * 109.46853 * 330.00308 * 8 6 4 12 12 C 1.52999 * 109.47673 * 120.00447 * 2 1 3 13 13 C 1.53006 * 109.46626 * 305.00060 * 12 2 1 14 14 H 1.08997 * 109.50841 * 54.91458 * 13 12 2 15 15 C 1.53099 * 109.50422 * 174.99671 * 13 12 2 16 16 O 1.43016 * 109.25789 * 176.78202 * 15 13 12 17 17 C 1.43013 * 113.73857 * 301.32897 * 16 15 13 18 18 C 1.53101 * 109.25744 * 58.67138 * 17 16 15 19 19 N 1.47007 * 109.50835 * 294.77874 * 13 12 2 20 20 H 1.08997 * 109.47163 * 299.99711 * 1 2 3 21 21 H 1.09001 * 109.47429 * 59.99860 * 1 2 3 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 0.96702 * 113.99716 * 180.02562 * 3 2 1 24 24 H 0.96999 * 119.99699 * 179.97438 * 7 6 4 25 25 H 1.08993 * 109.47839 * 185.00130 * 12 2 1 26 26 H 1.09000 * 109.47160 * 64.99691 * 12 2 1 27 27 H 1.09002 * 109.50633 * 296.71939 * 15 13 12 28 28 H 1.08999 * 109.50513 * 56.80377 * 15 13 12 29 29 H 1.08998 * 109.50626 * 178.60489 * 17 16 15 30 30 H 1.08992 * 109.51031 * 298.69336 * 17 16 15 31 31 H 1.08999 * 109.50822 * 63.08323 * 18 17 16 32 32 H 1.09001 * 109.51013 * 183.17376 * 18 17 16 33 33 H 1.00907 * 110.99633 * 305.23081 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3427 -2.1614 -4.4121 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7580 -3.7124 12 6 2.0401 -0.7213 1.2491 13 6 1.4300 -0.0763 2.4953 14 1 0.3435 -0.0720 2.4081 15 6 1.8400 -0.8736 3.7363 16 8 1.3298 -0.2243 4.9040 17 6 1.7861 1.1221 5.0597 18 6 1.3756 1.9396 3.8321 19 7 1.9186 1.3043 2.6227 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9703 1.4236 -0.0004 24 1 0.7092 1.1619 -3.4843 25 1 3.1263 -0.6444 1.2951 26 1 1.7517 -1.7716 1.2055 27 1 1.4311 -1.8820 3.6726 28 1 2.9273 -0.9248 3.7932 29 1 1.3382 1.5572 5.9531 30 1 2.8717 1.1297 5.1563 31 1 0.2882 1.9769 3.7666 32 1 1.7698 2.9520 3.9204 33 1 2.9273 1.3324 2.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307186725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -91.223542 kcal Electronic energy + Delta-G solvation = -15526.501898 eV Core-core repulsion = 12973.369987 eV Total energy + Delta-G solvation = -2553.131910 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.40972 -36.54892 -34.03879 -32.07318 -31.90005 -29.29337 -26.32851 -25.32488 -25.00540 -22.44023 -20.73421 -18.99928 -16.80163 -15.98014 -15.81566 -15.09802 -14.76925 -14.58033 -14.44607 -13.88591 -13.19818 -12.74897 -12.24000 -11.98533 -11.40914 -11.15758 -11.10707 -10.88394 -10.77933 -10.64005 -10.47497 -10.20088 -10.11975 -9.88009 -9.79357 -8.69961 -8.41148 -7.97869 -7.50966 -5.86675 -4.07648 3.30999 3.38553 3.40457 3.98327 4.44564 4.56702 5.01563 5.15733 5.28488 5.34919 5.43810 5.50362 5.73924 5.77695 5.95706 6.08525 6.13983 6.35697 6.59026 6.71855 6.87340 7.17044 7.24454 7.28482 7.46278 7.75458 7.82679 7.89194 8.20370 8.42492 8.93950 9.57432 9.79812 11.11529 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062349 B = 0.007956 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.979079 B = 3518.508225 C = 3682.831788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.261 3.739 3 O -0.537 6.537 4 C -0.565 4.565 5 H 0.050 0.950 6 C 0.081 3.919 7 N -0.855 5.855 8 Si 0.883 3.117 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.276 1.276 12 C -0.130 4.130 13 C 0.058 3.942 14 H 0.091 0.909 15 C 0.022 3.978 16 O -0.388 6.388 17 C 0.020 3.980 18 C 0.023 3.977 19 N -0.646 5.646 20 H 0.020 0.980 21 H 0.084 0.916 22 H 0.030 0.970 23 H 0.337 0.663 24 H 0.257 0.743 25 H 0.047 0.953 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.044 0.956 29 H 0.090 0.910 30 H 0.044 0.956 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.333 0.667 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.318 -0.193 10.998 11.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.221 3.779 3 O -0.338 6.338 4 C -0.603 4.603 5 H 0.069 0.931 6 C -0.124 4.124 7 N -0.491 5.491 8 Si 0.711 3.289 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.201 1.201 12 C -0.169 4.169 13 C -0.052 4.052 14 H 0.109 0.891 15 C -0.056 4.056 16 O -0.306 6.306 17 C -0.059 4.059 18 C -0.108 4.108 19 N -0.274 5.274 20 H 0.039 0.961 21 H 0.103 0.897 22 H 0.049 0.951 23 H 0.179 0.821 24 H 0.067 0.933 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.112 0.888 28 H 0.063 0.937 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 0.948 0.249 10.556 10.602 hybrid contribution 1.681 -1.108 -0.335 2.041 sum 2.630 -0.859 10.221 10.589 Atomic orbital electron populations 1.21619 0.96664 0.98500 1.01202 1.18419 0.91278 0.80238 0.87935 1.86599 1.22334 1.28072 1.96828 1.21708 1.33571 1.13345 0.91658 0.93128 1.24974 0.94353 0.94401 0.98676 1.70022 1.34812 1.21521 1.22740 0.86776 0.79272 0.79551 0.83320 1.20743 1.21250 1.20064 1.22371 0.99042 0.99593 0.95855 1.22351 1.01738 0.87432 0.93643 0.89061 1.23499 0.97865 0.97508 0.86748 1.87998 1.72339 1.25973 1.44335 1.23316 0.98402 0.84104 1.00106 1.22647 1.01795 0.97950 0.88364 1.60766 1.13167 1.17404 1.36094 0.96139 0.89691 0.95129 0.82134 0.93282 0.93422 0.92161 0.88810 0.93747 0.89143 0.93758 0.90373 0.90203 0.84967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.03 8.14 37.16 0.30 -2.73 16 2 C 0.26 6.33 0.67 -91.77 -0.06 6.27 16 3 O -0.54 -13.39 10.70 -35.23 -0.38 -13.77 16 4 C -0.56 -15.23 8.21 -34.44 -0.28 -15.51 16 5 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 6 C 0.08 2.24 5.24 -17.82 -0.09 2.15 16 7 N -0.85 -24.66 10.87 55.43 0.60 -24.06 16 8 Si 0.88 21.11 29.54 -169.99 -5.02 16.09 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 10 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 C -0.13 -2.57 4.11 -26.73 -0.11 -2.68 16 13 C 0.06 1.02 2.30 -67.60 -0.16 0.86 16 14 H 0.09 1.78 6.06 -51.93 -0.31 1.46 16 15 C 0.02 0.34 6.29 37.21 0.23 0.57 16 16 O -0.39 -6.05 10.83 -35.23 -0.38 -6.44 16 17 C 0.02 0.25 7.01 37.21 0.26 0.51 16 18 C 0.02 0.32 6.76 -3.71 -0.03 0.29 16 19 N -0.65 -10.74 4.92 -106.45 -0.52 -11.26 16 20 H 0.02 0.47 6.23 -51.93 -0.32 0.14 16 21 H 0.08 2.37 6.07 -51.93 -0.32 2.05 16 22 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.34 7.67 9.04 45.56 0.41 8.09 16 24 H 0.26 7.11 8.31 -40.82 -0.34 6.78 16 25 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 28 H 0.04 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 30 H 0.04 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 32 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.33 5.13 8.79 -39.29 -0.35 4.78 16 LS Contribution 262.44 15.07 3.95 3.95 Total: -1.00 -29.84 262.44 -5.91 -35.75 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -4.23 Total: 10.00 kcal Atomic # 6 Polarization: -10.34 SS G_CDS: 0.07 Total: -10.27 kcal Atomic # 7 Polarization: -35.40 SS G_CDS: 0.08 Total: -35.32 kcal Atomic # 8 Polarization: -19.45 SS G_CDS: -0.76 Total: -20.20 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 3.95 Total: 3.95 kcal Total: -29.84 -5.91 -35.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.477 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.910 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.746 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds