Wall clock time and date at job start Mon Mar 30 2020 02:46:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 O 1.42900 * 109.47056 * 2 1 4 4 C 1.50709 * 109.47273 * 240.00467 * 2 1 3 5 5 H 1.07993 * 119.99723 * 240.00375 * 4 2 1 6 6 C 1.37877 * 119.99763 * 59.99278 * 4 2 1 7 7 N 1.31520 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86801 * 119.99957 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47164 * 90.00179 * 8 6 4 10 10 H 1.48497 * 109.47335 * 210.00786 * 8 6 4 11 11 H 1.48507 * 109.46853 * 330.00308 * 8 6 4 12 12 C 1.52999 * 109.47673 * 120.00447 * 2 1 3 13 13 C 1.53006 * 109.46626 * 305.00060 * 12 2 1 14 14 H 1.08997 * 109.50841 * 54.91458 * 13 12 2 15 15 C 1.53099 * 109.50422 * 174.99671 * 13 12 2 16 16 O 1.43016 * 109.25789 * 176.78202 * 15 13 12 17 17 C 1.43013 * 113.73857 * 301.32897 * 16 15 13 18 18 C 1.53101 * 109.25744 * 58.67138 * 17 16 15 19 19 N 1.47007 * 109.50835 * 294.77874 * 13 12 2 20 20 H 1.08997 * 109.47163 * 299.99711 * 1 2 3 21 21 H 1.09001 * 109.47429 * 59.99860 * 1 2 3 22 22 H 1.08999 * 109.46883 * 179.97438 * 1 2 3 23 23 H 0.96702 * 113.99716 * 180.02562 * 3 2 1 24 24 H 0.96999 * 119.99699 * 179.97438 * 7 6 4 25 25 H 1.08993 * 109.47839 * 185.00130 * 12 2 1 26 26 H 1.09000 * 109.47160 * 64.99691 * 12 2 1 27 27 H 1.09002 * 109.50633 * 296.71939 * 15 13 12 28 28 H 1.08999 * 109.50513 * 56.80377 * 15 13 12 29 29 H 1.08998 * 109.50626 * 178.60489 * 17 16 15 30 30 H 1.08992 * 109.51031 * 298.69336 * 17 16 15 31 31 H 1.08999 * 109.50822 * 63.08323 * 18 17 16 32 32 H 1.09001 * 109.51013 * 183.17376 * 18 17 16 33 33 H 1.00907 * 110.99633 * 305.23081 * 19 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6532 -1.5884 -1.1315 6 6 1.6992 -0.2392 -2.4828 7 7 0.9433 0.8303 -2.6034 8 14 2.3213 -1.1201 -4.0081 9 1 1.3427 -2.1614 -4.4121 10 1 2.4865 -0.1410 -5.1123 11 1 3.6293 -1.7580 -3.7124 12 6 2.0401 -0.7213 1.2491 13 6 1.4300 -0.0763 2.4953 14 1 0.3435 -0.0720 2.4081 15 6 1.8400 -0.8736 3.7363 16 8 1.3298 -0.2243 4.9040 17 6 1.7861 1.1221 5.0597 18 6 1.3756 1.9396 3.8321 19 7 1.9186 1.3043 2.6227 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 2.9703 1.4236 -0.0004 24 1 0.7092 1.1619 -3.4843 25 1 3.1263 -0.6444 1.2951 26 1 1.7517 -1.7716 1.2055 27 1 1.4311 -1.8820 3.6726 28 1 2.9273 -0.9248 3.7932 29 1 1.3382 1.5572 5.9531 30 1 2.8717 1.1297 5.1563 31 1 0.2882 1.9769 3.7666 32 1 1.7698 2.9520 3.9204 33 1 2.9273 1.3324 2.6212 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307186725.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:53 Heat of formation + Delta-G solvation = -114.573143 kcal Electronic energy + Delta-G solvation = -15527.514412 eV Core-core repulsion = 12973.369987 eV Total energy + Delta-G solvation = -2554.144425 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.65465 -38.28463 -35.42382 -34.09267 -33.34060 -31.00170 -27.77648 -27.26698 -26.45707 -23.77331 -22.06280 -20.78577 -18.78326 -17.22539 -17.03167 -16.61749 -16.32643 -16.08010 -15.98507 -15.33578 -14.94262 -14.51080 -13.62751 -13.34631 -13.09808 -12.92914 -12.72551 -12.64796 -12.50420 -12.17970 -12.08943 -12.02073 -11.73407 -11.60780 -11.06398 -10.62369 -10.48091 -9.83009 -8.83434 -7.94434 -6.22433 1.41973 1.43915 1.52482 2.45259 2.89996 3.24310 3.34945 3.82671 4.06512 4.12443 4.28400 4.30765 4.42469 4.56119 4.62956 4.72709 4.83233 4.93881 5.01945 5.08422 5.14333 5.32679 5.40971 5.67454 5.86578 6.13375 6.16378 6.25171 6.37178 6.63253 6.88008 7.49223 7.89506 9.01745 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.062349 B = 0.007956 C = 0.007601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 448.979079 B = 3518.508225 C = 3682.831788 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.253 3.747 3 O -0.549 6.549 4 C -0.578 4.578 5 H 0.050 0.950 6 C 0.033 3.967 7 N -0.887 5.887 8 Si 0.945 3.055 9 H -0.279 1.279 10 H -0.287 1.287 11 H -0.269 1.269 12 C -0.119 4.119 13 C 0.068 3.932 14 H 0.067 0.933 15 C 0.030 3.970 16 O -0.403 6.403 17 C 0.021 3.979 18 C 0.024 3.976 19 N -0.666 5.666 20 H 0.028 0.972 21 H 0.050 0.950 22 H 0.034 0.966 23 H 0.344 0.656 24 H 0.255 0.745 25 H 0.057 0.943 26 H 0.061 0.939 27 H 0.100 0.900 28 H 0.059 0.941 29 H 0.113 0.887 30 H 0.060 0.940 31 H 0.061 0.939 32 H 0.099 0.901 33 H 0.340 0.660 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.372 -0.655 12.014 12.495 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.214 3.786 3 O -0.351 6.351 4 C -0.616 4.616 5 H 0.068 0.932 6 C -0.169 4.169 7 N -0.524 5.524 8 Si 0.771 3.229 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.193 1.193 12 C -0.157 4.157 13 C -0.042 4.042 14 H 0.085 0.915 15 C -0.048 4.048 16 O -0.323 6.323 17 C -0.057 4.057 18 C -0.106 4.106 19 N -0.296 5.296 20 H 0.047 0.953 21 H 0.069 0.931 22 H 0.053 0.947 23 H 0.187 0.813 24 H 0.064 0.936 25 H 0.075 0.925 26 H 0.079 0.921 27 H 0.119 0.881 28 H 0.077 0.923 29 H 0.131 0.869 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.117 0.883 33 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 2.014 -0.220 11.588 11.763 hybrid contribution 1.340 -0.917 -0.626 1.741 sum 3.354 -1.137 10.961 11.519 Atomic orbital electron populations 1.21508 0.97552 0.98306 0.99822 1.18466 0.90733 0.80210 0.89227 1.86565 1.23051 1.28545 1.96980 1.22117 1.33174 1.13330 0.92972 0.93210 1.25694 0.94608 0.95074 1.01560 1.70174 1.36093 1.23012 1.23100 0.85797 0.78914 0.78372 0.79823 1.20442 1.21313 1.19304 1.22125 0.99539 0.99135 0.94883 1.22074 0.99986 0.88410 0.93772 0.91511 1.23372 0.98663 0.97303 0.85497 1.87985 1.72884 1.27326 1.44056 1.23446 0.99519 0.82607 1.00174 1.22674 1.00806 0.99044 0.88046 1.60677 1.13821 1.17020 1.38054 0.95336 0.93074 0.94701 0.81335 0.93579 0.92463 0.92079 0.88148 0.92324 0.86899 0.92215 0.91998 0.88250 0.84144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 8.14 71.98 0.59 -5.14 16 2 C 0.25 12.21 0.67 -11.54 -0.01 12.20 16 3 O -0.55 -27.30 10.70 -148.98 -1.59 -28.89 16 4 C -0.58 -30.94 8.21 25.60 0.21 -30.73 16 5 H 0.05 2.61 7.74 -2.91 -0.02 2.59 16 6 C 0.03 1.81 5.24 84.65 0.44 2.25 16 7 N -0.89 -51.74 10.87 21.45 0.23 -51.50 16 8 Si 0.94 43.26 29.54 68.60 2.03 45.29 16 9 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 10 H -0.29 -13.09 7.11 99.48 0.71 -12.38 16 11 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 12 C -0.12 -4.54 4.11 30.60 0.13 -4.41 16 13 C 0.07 2.28 2.30 44.93 0.10 2.38 16 14 H 0.07 2.57 6.06 -2.39 -0.01 2.55 16 15 C 0.03 0.84 6.29 72.02 0.45 1.30 16 16 O -0.40 -11.61 10.83 -148.98 -1.61 -13.22 16 17 C 0.02 0.47 7.01 72.02 0.50 0.97 16 18 C 0.02 0.63 6.76 86.32 0.58 1.21 16 19 N -0.67 -21.15 4.92 -490.71 -2.41 -23.56 16 20 H 0.03 1.33 6.23 -2.39 -0.01 1.31 16 21 H 0.05 2.90 6.07 -2.39 -0.01 2.89 16 22 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 23 H 0.34 15.53 9.04 -74.06 -0.67 14.86 16 24 H 0.25 14.31 8.31 -92.71 -0.77 13.54 16 25 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 26 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 27 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 28 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 32 H 0.10 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.34 9.80 8.79 -89.69 -0.79 9.01 16 Total: -1.00 -62.55 262.44 -0.71 -63.26 By element: Atomic # 1 Polarization: 28.93 SS G_CDS: -0.35 Total: 28.58 kcal Atomic # 6 Polarization: -22.96 SS G_CDS: 3.00 Total: -19.95 kcal Atomic # 7 Polarization: -72.89 SS G_CDS: -2.18 Total: -75.07 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -3.21 Total: -42.11 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 2.03 Total: 45.29 kcal Total: -62.55 -0.71 -63.26 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307186725.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.311 kcal (2) G-P(sol) polarization free energy of solvation -62.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.865 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.263 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds