Wall clock time and date at job start Mon Mar 30 2020 03:22:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47687 * 2 1 4 4 C 1.50699 * 109.47591 * 120.00706 * 2 1 3 5 5 H 1.08007 * 119.99950 * 119.99337 * 4 2 1 6 6 C 1.37879 * 119.99784 * 299.99935 * 4 2 1 7 7 N 1.31509 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47511 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47129 * 120.00030 * 8 6 4 11 11 H 1.48504 * 109.47002 * 239.99907 * 8 6 4 12 12 N 1.46910 * 109.46780 * 240.00499 * 2 1 3 13 13 C 1.47845 * 110.99816 * 46.86300 * 12 2 1 14 14 C 1.55376 * 104.83960 * 146.36644 * 13 12 2 15 15 H 1.09005 * 111.00610 * 80.93513 * 14 13 12 16 16 O 1.42895 * 111.17134 * 204.89867 * 14 13 12 17 17 C 1.55140 * 101.43778 * 322.95717 * 14 13 12 18 18 C 1.47444 * 110.99956 * 167.70163 * 12 2 1 19 19 H 1.08999 * 110.02508 * 117.26038 * 18 12 2 20 20 C 1.52999 * 109.88949 * 356.15156 * 18 12 2 21 21 O 1.42904 * 109.46827 * 294.67664 * 20 18 12 22 22 H 1.08993 * 109.47617 * 53.31322 * 1 2 3 23 23 H 1.09002 * 109.47396 * 173.32373 * 1 2 3 24 24 H 1.09003 * 109.46577 * 293.31907 * 1 2 3 25 25 H 0.96997 * 120.00056 * 179.97438 * 7 6 4 26 26 H 1.09006 * 110.37022 * 265.19392 * 13 12 2 27 27 H 1.09002 * 110.37555 * 27.41601 * 13 12 2 28 28 H 0.96707 * 113.99970 * 292.10951 * 16 14 13 29 29 H 1.09005 * 110.69919 * 277.17276 * 17 14 13 30 30 H 1.09003 * 110.70281 * 154.11780 * 17 14 13 31 31 H 1.09001 * 109.47330 * 54.67476 * 20 18 12 32 32 H 1.09003 * 109.47326 * 174.67551 * 20 18 12 33 33 H 0.96703 * 113.99652 * 185.12420 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8299 2.6035 8 14 2.3216 -1.1208 4.0077 9 1 3.1457 -2.2881 3.6035 10 1 3.1469 -0.1879 4.8164 11 1 1.1663 -1.5872 4.8159 12 7 2.0196 -0.6924 -1.1996 13 6 1.3063 -0.2271 -2.4081 14 6 2.3647 -0.2905 -3.5439 15 1 2.4659 -1.3058 -3.9275 16 8 2.0478 0.6229 -4.5962 17 6 3.6486 0.1504 -2.7930 18 6 3.4637 -0.4635 -1.3894 19 1 4.0032 -1.4083 -1.3239 20 6 3.9813 0.5059 -0.3249 21 8 3.3786 1.7877 -0.5145 22 1 -0.3634 0.6139 -0.8240 23 1 -0.3634 -1.0207 -0.1195 24 1 -0.3632 0.4068 0.9438 25 1 0.7091 1.1610 3.4845 26 1 0.4691 -0.8880 -2.6327 27 1 0.9552 0.7957 -2.2713 28 1 1.2526 0.3886 -5.0942 29 1 3.7063 1.2373 -2.7338 30 1 4.5368 -0.2554 -3.2773 31 1 3.7272 0.1278 0.6653 32 1 5.0641 0.5971 -0.4122 33 1 3.7189 2.4736 0.0761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307230013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:49 Heat of formation + Delta-G solvation = -74.616245 kcal Electronic energy + Delta-G solvation = -15851.476247 eV Core-core repulsion = 13299.064483 eV Total energy + Delta-G solvation = -2552.411764 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.22099 -36.38837 -34.78580 -33.31691 -30.86520 -29.06550 -27.17173 -25.04356 -24.05086 -21.39487 -20.15755 -18.50345 -17.12721 -16.84897 -15.97786 -15.32917 -14.71482 -14.29988 -13.92609 -13.28599 -12.77740 -12.74767 -12.26772 -11.98774 -11.68651 -11.15491 -11.10884 -10.86694 -10.67898 -10.39576 -10.19260 -10.11890 -9.83833 -9.56331 -9.35728 -9.16797 -8.83841 -8.29158 -6.90522 -5.97527 -3.96933 3.27425 3.36741 3.40521 4.35390 4.46898 5.00772 5.19039 5.24883 5.32843 5.41976 5.55633 5.85012 6.00415 6.17277 6.26625 6.38563 6.51292 6.57690 6.85840 6.94797 7.09815 7.11236 7.23713 7.70426 7.80113 7.91401 7.93755 8.31518 8.40930 8.50427 8.67580 9.08708 9.60270 11.07120 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.010281 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.631093 B = 2722.921319 C = 2923.584051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.169 3.831 3 H 0.072 0.928 4 C -0.490 4.490 5 H 0.059 0.941 6 C 0.056 3.944 7 N -0.888 5.888 8 Si 0.888 3.112 9 H -0.273 1.273 10 H -0.286 1.286 11 H -0.285 1.285 12 N -0.515 5.515 13 C 0.021 3.979 14 C 0.087 3.913 15 H 0.063 0.937 16 O -0.566 6.566 17 C -0.127 4.127 18 C 0.087 3.913 19 H 0.081 0.919 20 C 0.039 3.961 21 O -0.558 6.558 22 H 0.006 0.994 23 H 0.024 0.976 24 H 0.086 0.914 25 H 0.258 0.742 26 H 0.063 0.937 27 H 0.051 0.949 28 H 0.373 0.627 29 H 0.084 0.916 30 H 0.062 0.938 31 H 0.114 0.886 32 H 0.018 0.982 33 H 0.364 0.636 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.685 -0.589 -7.552 8.424 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.063 3.937 3 H 0.089 0.911 4 C -0.528 4.528 5 H 0.077 0.923 6 C -0.145 4.145 7 N -0.527 5.527 8 Si 0.717 3.283 9 H -0.198 1.198 10 H -0.213 1.213 11 H -0.211 1.211 12 N -0.241 5.241 13 C -0.108 4.108 14 C 0.028 3.972 15 H 0.081 0.919 16 O -0.370 6.370 17 C -0.166 4.166 18 C -0.022 4.022 19 H 0.099 0.901 20 C -0.039 4.039 21 O -0.363 6.363 22 H 0.025 0.975 23 H 0.043 0.957 24 H 0.105 0.895 25 H 0.068 0.932 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.219 0.781 29 H 0.103 0.897 30 H 0.080 0.920 31 H 0.131 0.869 32 H 0.037 0.963 33 H 0.211 0.789 Dipole moment (debyes) X Y Z Total from point charges 3.721 -1.042 -7.557 8.487 hybrid contribution 0.161 0.264 1.017 1.063 sum 3.881 -0.778 -6.540 7.644 Atomic orbital electron populations 1.21917 0.98793 0.97976 1.00956 1.20285 0.91707 0.96401 0.85264 0.91099 1.21145 1.29915 1.11800 0.89986 0.92304 1.24924 0.95624 0.95266 0.98724 1.69913 1.36847 1.22914 1.23030 0.86591 0.78653 0.79735 0.83346 1.19783 1.21250 1.21112 1.63876 1.00644 1.56733 1.02825 1.23597 0.96704 0.99409 0.91065 1.23120 0.95850 0.91421 0.86785 0.91937 1.86489 1.48934 1.53168 1.48372 1.22753 0.95700 1.02842 0.95275 1.22305 0.91904 0.96099 0.91892 0.90110 1.23292 0.93113 0.83865 1.03615 1.86503 1.65799 1.20199 1.63766 0.97537 0.95686 0.89526 0.93173 0.91869 0.93099 0.78115 0.89725 0.91958 0.86851 0.96331 0.78911 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.49 8.48 37.15 0.32 -3.17 16 2 C 0.17 4.22 1.49 -68.86 -0.10 4.12 16 3 H 0.07 1.91 4.37 -39.85 -0.17 1.73 16 4 C -0.49 -12.98 5.66 -34.44 -0.19 -13.17 16 5 H 0.06 1.58 7.79 -52.48 -0.41 1.18 16 6 C 0.06 1.49 5.28 -17.82 -0.09 1.39 16 7 N -0.89 -24.67 11.29 55.43 0.63 -24.04 16 8 Si 0.89 20.77 29.54 -169.99 -5.02 15.75 16 9 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.51 -11.38 5.02 -216.51 -1.09 -12.47 16 13 C 0.02 0.42 5.17 -2.04 -0.01 0.41 16 14 C 0.09 1.48 4.45 -24.34 -0.11 1.37 16 15 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 16 O -0.57 -8.92 13.48 -35.23 -0.47 -9.39 16 17 C -0.13 -2.25 6.08 -24.91 -0.15 -2.41 16 18 C 0.09 1.71 3.64 -66.73 -0.24 1.47 16 19 H 0.08 1.51 8.14 -51.93 -0.42 1.09 16 20 C 0.04 0.77 5.93 37.16 0.22 0.99 16 21 O -0.56 -11.34 9.62 -35.23 -0.34 -11.68 16 22 H 0.01 0.13 6.65 -51.93 -0.35 -0.21 16 23 H 0.02 0.61 8.14 -51.93 -0.42 0.19 16 24 H 0.09 2.38 5.92 -51.93 -0.31 2.07 16 25 H 0.26 6.88 8.31 -40.82 -0.34 6.54 16 26 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 27 H 0.05 1.10 6.87 -51.93 -0.36 0.75 16 28 H 0.37 4.08 9.12 45.56 0.42 4.49 16 29 H 0.08 1.64 6.94 -51.93 -0.36 1.28 16 30 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 31 H 0.11 2.59 4.64 -51.93 -0.24 2.35 16 32 H 0.02 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.36 6.10 9.12 58.51 0.53 6.63 16 LS Contribution 255.01 15.07 3.84 3.84 Total: -1.00 -29.95 255.01 -5.74 -35.68 By element: Atomic # 1 Polarization: 14.23 SS G_CDS: -2.92 Total: 11.32 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: -0.37 Total: -9.01 kcal Atomic # 7 Polarization: -36.05 SS G_CDS: -0.46 Total: -36.51 kcal Atomic # 8 Polarization: -20.26 SS G_CDS: -0.81 Total: -21.07 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -29.95 -5.74 -35.68 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307230013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.932 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.736 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.685 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds