Wall clock time and date at job start Mon Mar 30 2020 03:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08996 * 109.47687 * 2 1 4 4 C 1.50699 * 109.47591 * 120.00706 * 2 1 3 5 5 H 1.08007 * 119.99950 * 119.99337 * 4 2 1 6 6 C 1.37879 * 119.99784 * 299.99935 * 4 2 1 7 7 N 1.31509 * 120.00127 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 119.99750 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47511 * 359.97438 * 8 6 4 10 10 H 1.48500 * 109.47129 * 120.00030 * 8 6 4 11 11 H 1.48504 * 109.47002 * 239.99907 * 8 6 4 12 12 N 1.46910 * 109.46780 * 240.00499 * 2 1 3 13 13 C 1.47845 * 110.99816 * 46.86300 * 12 2 1 14 14 C 1.55376 * 104.83960 * 146.36644 * 13 12 2 15 15 H 1.09005 * 111.00610 * 80.93513 * 14 13 12 16 16 O 1.42895 * 111.17134 * 204.89867 * 14 13 12 17 17 C 1.55140 * 101.43778 * 322.95717 * 14 13 12 18 18 C 1.47444 * 110.99956 * 167.70163 * 12 2 1 19 19 H 1.08999 * 110.02508 * 117.26038 * 18 12 2 20 20 C 1.52999 * 109.88949 * 356.15156 * 18 12 2 21 21 O 1.42904 * 109.46827 * 294.67664 * 20 18 12 22 22 H 1.08993 * 109.47617 * 53.31322 * 1 2 3 23 23 H 1.09002 * 109.47396 * 173.32373 * 1 2 3 24 24 H 1.09003 * 109.46577 * 293.31907 * 1 2 3 25 25 H 0.96997 * 120.00056 * 179.97438 * 7 6 4 26 26 H 1.09006 * 110.37022 * 265.19392 * 13 12 2 27 27 H 1.09002 * 110.37555 * 27.41601 * 13 12 2 28 28 H 0.96707 * 113.99970 * 292.10951 * 16 14 13 29 29 H 1.09005 * 110.69919 * 277.17276 * 17 14 13 30 30 H 1.09003 * 110.70281 * 154.11780 * 17 14 13 31 31 H 1.09001 * 109.47330 * 54.67476 * 20 18 12 32 32 H 1.09003 * 109.47326 * 174.67551 * 20 18 12 33 33 H 0.96703 * 113.99652 * 185.12420 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 1.2303 5 1 2.6533 -1.5887 1.1311 6 6 1.6993 -0.2396 2.4827 7 7 0.9437 0.8299 2.6035 8 14 2.3216 -1.1208 4.0077 9 1 3.1457 -2.2881 3.6035 10 1 3.1469 -0.1879 4.8164 11 1 1.1663 -1.5872 4.8159 12 7 2.0196 -0.6924 -1.1996 13 6 1.3063 -0.2271 -2.4081 14 6 2.3647 -0.2905 -3.5439 15 1 2.4659 -1.3058 -3.9275 16 8 2.0478 0.6229 -4.5962 17 6 3.6486 0.1504 -2.7930 18 6 3.4637 -0.4635 -1.3894 19 1 4.0032 -1.4083 -1.3239 20 6 3.9813 0.5059 -0.3249 21 8 3.3786 1.7877 -0.5145 22 1 -0.3634 0.6139 -0.8240 23 1 -0.3634 -1.0207 -0.1195 24 1 -0.3632 0.4068 0.9438 25 1 0.7091 1.1610 3.4845 26 1 0.4691 -0.8880 -2.6327 27 1 0.9552 0.7957 -2.2713 28 1 1.2526 0.3886 -5.0942 29 1 3.7063 1.2373 -2.7338 30 1 4.5368 -0.2554 -3.2773 31 1 3.7272 0.1278 0.6653 32 1 5.0641 0.5971 -0.4122 33 1 3.7189 2.4736 0.0761 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307230013.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:48 Heat of formation + Delta-G solvation = -100.352425 kcal Electronic energy + Delta-G solvation = -15852.592252 eV Core-core repulsion = 13299.064483 eV Total energy + Delta-G solvation = -2553.527768 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.79237 -37.77940 -36.39780 -35.14128 -32.67088 -30.63536 -28.90394 -27.05126 -25.61193 -23.10010 -21.66177 -20.21160 -18.72962 -18.22888 -17.87653 -16.97518 -16.53677 -15.78737 -15.57753 -15.02614 -14.43223 -14.25535 -13.84685 -13.58359 -13.40653 -13.02236 -12.75204 -12.59822 -12.50272 -12.18752 -12.01495 -11.67163 -11.57192 -11.22805 -10.95993 -10.80994 -10.71483 -10.24195 -8.66008 -8.00637 -6.05007 1.41715 1.46017 1.55780 2.45924 3.08387 3.25162 3.55356 3.77905 3.79951 3.97890 4.19767 4.38001 4.54544 4.72125 4.78498 4.91683 4.94912 5.03625 5.06400 5.13953 5.23868 5.41424 5.47293 5.67327 5.82323 5.99431 6.39591 6.53476 6.77336 6.91253 6.96996 7.10449 7.54617 9.03197 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.044040 B = 0.010281 C = 0.009575 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 635.631093 B = 2722.921319 C = 2923.584051 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C 0.173 3.827 3 H 0.055 0.945 4 C -0.491 4.491 5 H 0.051 0.949 6 C 0.011 3.989 7 N -0.916 5.916 8 Si 0.949 3.051 9 H -0.268 1.268 10 H -0.281 1.281 11 H -0.288 1.288 12 N -0.527 5.527 13 C 0.020 3.980 14 C 0.101 3.899 15 H 0.088 0.912 16 O -0.575 6.575 17 C -0.122 4.122 18 C 0.079 3.921 19 H 0.093 0.907 20 C 0.042 3.958 21 O -0.573 6.573 22 H 0.016 0.984 23 H 0.021 0.979 24 H 0.061 0.939 25 H 0.258 0.742 26 H 0.071 0.929 27 H 0.024 0.976 28 H 0.394 0.606 29 H 0.065 0.935 30 H 0.091 0.909 31 H 0.082 0.918 32 H 0.049 0.951 33 H 0.377 0.623 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.741 -1.410 -8.556 9.883 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.067 3.933 3 H 0.072 0.928 4 C -0.530 4.530 5 H 0.069 0.931 6 C -0.187 4.187 7 N -0.557 5.557 8 Si 0.775 3.225 9 H -0.193 1.193 10 H -0.207 1.207 11 H -0.214 1.214 12 N -0.253 5.253 13 C -0.109 4.109 14 C 0.041 3.959 15 H 0.106 0.894 16 O -0.382 6.382 17 C -0.160 4.160 18 C -0.029 4.029 19 H 0.111 0.889 20 C -0.036 4.036 21 O -0.380 6.380 22 H 0.035 0.965 23 H 0.040 0.960 24 H 0.080 0.920 25 H 0.067 0.933 26 H 0.090 0.910 27 H 0.043 0.957 28 H 0.244 0.756 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.100 0.900 32 H 0.067 0.933 33 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges 4.777 -1.866 -8.580 9.996 hybrid contribution -0.174 0.548 1.269 1.393 sum 4.603 -1.318 -7.311 8.740 Atomic orbital electron populations 1.21786 0.99418 0.97613 0.99943 1.20069 0.91165 0.95727 0.86380 0.92834 1.21269 1.29474 1.11335 0.90873 0.93095 1.25567 0.95938 0.95920 1.01258 1.70031 1.37997 1.24179 1.23454 0.85647 0.77957 0.78797 0.80052 1.19259 1.20748 1.21434 1.63765 1.02359 1.56490 1.02708 1.23633 0.97831 0.97880 0.91515 1.22987 0.93972 0.92747 0.86149 0.89424 1.86447 1.50425 1.53308 1.48029 1.22686 0.97463 1.01567 0.94291 1.22450 0.90485 0.96793 0.93210 0.88906 1.23107 0.94818 0.83674 1.01955 1.86459 1.66563 1.20768 1.64165 0.96537 0.96011 0.92018 0.93300 0.91040 0.95725 0.75594 0.91643 0.89077 0.90026 0.93315 0.77464 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.61 8.48 71.98 0.61 -6.00 16 2 C 0.17 8.70 1.49 44.16 0.07 8.77 16 3 H 0.05 2.94 4.37 5.26 0.02 2.97 16 4 C -0.49 -26.11 5.66 25.60 0.14 -25.96 16 5 H 0.05 2.74 7.79 -2.91 -0.02 2.71 16 6 C 0.01 0.61 5.28 84.66 0.45 1.05 16 7 N -0.92 -51.67 11.29 21.45 0.24 -51.43 16 8 Si 0.95 42.77 29.54 68.60 2.03 44.79 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.29 -13.05 7.11 99.48 0.71 -12.35 16 12 N -0.53 -22.83 5.02 -838.90 -4.21 -27.04 16 13 C 0.02 0.77 5.17 86.94 0.45 1.22 16 14 C 0.10 3.11 4.45 32.14 0.14 3.26 16 15 H 0.09 2.32 8.14 -2.38 -0.02 2.30 16 16 O -0.57 -16.46 13.48 -148.98 -2.01 -18.47 16 17 C -0.12 -3.98 6.08 31.77 0.19 -3.79 16 18 C 0.08 2.98 3.64 45.26 0.16 3.14 16 19 H 0.09 3.24 8.14 -2.39 -0.02 3.22 16 20 C 0.04 1.62 5.93 71.98 0.43 2.05 16 21 O -0.57 -23.17 9.62 -148.98 -1.43 -24.60 16 22 H 0.02 0.76 6.65 -2.39 -0.02 0.74 16 23 H 0.02 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.06 3.46 5.92 -2.39 -0.01 3.44 16 25 H 0.26 13.92 8.31 -92.71 -0.77 13.15 16 26 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 27 H 0.02 1.06 6.87 -2.39 -0.02 1.04 16 28 H 0.39 7.41 9.12 -74.05 -0.68 6.73 16 29 H 0.06 2.41 6.94 -2.38 -0.02 2.39 16 30 H 0.09 2.45 8.14 -2.39 -0.02 2.43 16 31 H 0.08 3.73 4.64 -2.39 -0.01 3.71 16 32 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.38 12.61 9.12 -52.77 -0.48 12.13 16 Total: -1.00 -63.25 255.01 -2.73 -65.98 By element: Atomic # 1 Polarization: 27.03 SS G_CDS: 0.00 Total: 27.03 kcal Atomic # 6 Polarization: -18.92 SS G_CDS: 2.65 Total: -16.27 kcal Atomic # 7 Polarization: -74.50 SS G_CDS: -3.97 Total: -78.47 kcal Atomic # 8 Polarization: -39.63 SS G_CDS: -3.44 Total: -43.07 kcal Atomic # 14 Polarization: 42.77 SS G_CDS: 2.03 Total: 44.79 kcal Total: -63.25 -2.73 -65.98 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307230013.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.373 kcal (2) G-P(sol) polarization free energy of solvation -63.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.980 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds