Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00027 * 2 1 4 4 H 1.09003 * 109.50451 * 304.92174 * 3 2 1 5 5 C 1.53119 * 109.50448 * 64.99714 * 3 2 1 6 6 C 1.53120 * 109.16026 * 177.63556 * 5 3 2 7 7 C 1.53031 * 109.27889 * 302.34545 * 6 5 3 8 8 N 1.46845 * 109.52355 * 59.17893 * 7 6 5 9 9 C 1.46902 * 111.00362 * 174.15705 * 8 7 6 10 10 C 1.50706 * 109.46580 * 66.04511 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46844 * 111.20123 * 298.25865 * 8 7 6 19 19 H 1.08995 * 109.47123 * 59.99974 * 1 2 3 20 20 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47220 * 300.00053 * 1 2 3 22 22 H 1.09007 * 109.52214 * 57.73051 * 5 3 2 23 23 H 1.09003 * 109.52822 * 297.54558 * 5 3 2 24 24 H 1.09009 * 109.49913 * 182.40768 * 6 5 3 25 25 H 1.09001 * 109.50434 * 62.29276 * 6 5 3 26 26 H 1.09003 * 109.46695 * 299.16465 * 7 6 5 27 27 H 1.09005 * 109.45457 * 179.19056 * 7 6 5 28 28 H 1.09000 * 109.47263 * 306.05115 * 9 8 7 29 29 H 1.08993 * 109.47737 * 186.04677 * 9 8 7 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46537 * 181.75262 * 18 8 7 32 32 H 1.09001 * 109.45812 * 301.72666 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7308 2.2544 -0.8425 5 6 1.7427 2.4028 1.3081 6 6 2.1432 3.8806 1.3253 7 6 3.6608 3.9947 1.1657 8 7 4.0692 3.3732 -0.1005 9 6 5.5006 3.5853 -0.3536 10 6 6.3086 2.8494 0.6841 11 1 5.8088 2.2807 1.4542 12 6 7.6860 2.9014 0.6495 13 7 8.3911 2.2588 1.5548 14 14 8.5506 3.8845 -0.6829 15 1 8.8018 3.0118 -1.8578 16 1 7.6938 5.0274 -1.0894 17 1 9.8432 4.3961 -0.1608 18 6 3.7375 1.9428 -0.1213 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.2040 1.8905 2.1524 23 1 0.6582 2.3185 1.3781 24 1 1.8422 4.3282 2.2727 25 1 1.6506 4.4008 0.5038 26 1 4.1526 3.4862 1.9950 27 1 3.9476 5.0464 1.1632 28 1 5.7250 4.6507 -0.3004 29 1 5.7540 3.2097 -1.3449 30 1 9.3602 2.2951 1.5303 31 1 4.0800 1.5041 -1.0584 32 1 4.2288 1.4440 0.7142 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307319290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -8.634515 kcal Electronic energy + Delta-G solvation = -12932.273038 eV Core-core repulsion = 10825.475327 eV Total energy + Delta-G solvation = -2106.797710 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.33627 -33.74868 -31.93010 -30.39914 -28.90908 -27.32673 -23.79199 -22.62687 -21.12235 -19.22562 -16.84268 -16.22159 -15.09453 -14.59680 -14.26361 -13.93849 -13.75605 -13.46007 -13.30086 -12.97613 -12.47002 -12.03724 -11.89398 -11.27952 -11.24005 -11.05338 -10.54840 -10.42093 -10.26389 -10.05224 -9.82364 -9.51717 -9.44838 -8.60368 -7.50625 -7.25849 -6.11099 -4.11540 1.85892 2.78676 3.27693 3.35164 3.38367 4.38904 4.87074 4.99694 5.12068 5.15833 5.21595 5.25577 5.40562 5.55959 5.69167 5.81080 5.93435 6.11910 6.15724 6.34399 6.36179 6.54963 6.69494 6.80432 6.92909 7.03774 7.53481 7.99803 8.04504 8.43051 8.90886 9.51201 11.01776 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.008116 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.335384 B = 3449.115003 C = 3713.231960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 S -0.266 6.266 3 C -0.044 4.044 4 H 0.088 0.912 5 C -0.112 4.112 6 C -0.113 4.113 7 C 0.058 3.942 8 N -0.531 5.531 9 C 0.155 3.845 10 C -0.554 4.554 11 H 0.075 0.925 12 C 0.073 3.927 13 N -0.898 5.898 14 Si 0.879 3.121 15 H -0.276 1.276 16 H -0.264 1.264 17 H -0.287 1.287 18 C 0.084 3.916 19 H 0.072 0.928 20 H 0.096 0.904 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.054 0.946 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.045 0.955 27 H 0.067 0.933 28 H 0.031 0.969 29 H 0.026 0.974 30 H 0.264 0.736 31 H 0.073 0.927 32 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.166 0.295 -2.387 14.369 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.290 4.290 2 S -0.039 6.039 3 C -0.173 4.173 4 H 0.106 0.894 5 C -0.151 4.151 6 C -0.153 4.153 7 C -0.070 4.070 8 N -0.256 5.256 9 C 0.028 3.972 10 C -0.592 4.592 11 H 0.093 0.907 12 C -0.130 4.130 13 N -0.536 5.536 14 Si 0.706 3.294 15 H -0.201 1.201 16 H -0.188 1.188 17 H -0.213 1.213 18 C -0.046 4.046 19 H 0.091 0.909 20 H 0.114 0.886 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.073 0.927 24 H 0.081 0.919 25 H 0.082 0.918 26 H 0.063 0.937 27 H 0.085 0.915 28 H 0.049 0.951 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.091 0.909 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -13.571 -0.421 -2.731 13.849 hybrid contribution 0.259 1.015 0.037 1.048 sum -13.312 0.593 -2.694 13.594 Atomic orbital electron populations 1.23333 0.95242 1.05859 1.04549 1.86952 1.06069 1.12941 1.97917 1.23302 1.01748 0.91388 1.00836 0.89411 1.21868 0.99692 0.96742 0.96814 1.21637 0.97268 0.95222 1.01140 1.21930 0.93223 0.99506 0.92386 1.62373 1.19855 1.11311 1.32019 1.20192 0.83360 0.97010 0.96637 1.21694 0.91785 1.31964 1.13772 0.90668 1.24971 0.97537 0.94914 0.95593 1.69932 1.06426 1.42427 1.34788 0.86797 0.79196 0.81135 0.82301 1.20129 1.18831 1.21277 1.21594 0.89504 0.90882 1.02592 0.90874 0.88567 0.90754 0.90988 0.92681 0.91891 0.91815 0.93671 0.91483 0.95093 0.95572 0.92654 0.90870 0.92648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.46 101.05 1.06 -0.24 16 2 S -0.27 -4.06 21.80 -107.50 -2.34 -6.40 16 3 C -0.04 -0.70 2.81 -26.65 -0.07 -0.78 16 4 H 0.09 1.36 8.14 -51.92 -0.42 0.94 16 5 C -0.11 -1.63 5.16 -26.61 -0.14 -1.77 16 6 C -0.11 -1.67 6.09 -26.65 -0.16 -1.83 16 7 C 0.06 1.10 5.14 -3.84 -0.02 1.08 16 8 N -0.53 -11.06 4.86 -236.12 -1.15 -12.20 16 9 C 0.15 3.72 4.20 -4.97 -0.02 3.70 16 10 C -0.55 -15.43 8.29 -34.44 -0.29 -15.71 16 11 H 0.08 2.29 6.08 -52.49 -0.32 1.97 16 12 C 0.07 2.09 5.47 -17.82 -0.10 1.99 16 13 N -0.90 -27.44 13.96 55.43 0.77 -26.66 16 14 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 15 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 16 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 17 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 18 C 0.08 1.67 4.30 -3.84 -0.02 1.65 16 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 20 H 0.10 0.89 8.14 -51.92 -0.42 0.47 16 21 H 0.07 0.73 7.22 -51.92 -0.37 0.36 16 22 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 23 H 0.05 0.68 7.04 -51.93 -0.37 0.31 16 24 H 0.06 0.81 8.14 -51.92 -0.42 0.39 16 25 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 26 H 0.05 0.96 7.03 -51.93 -0.37 0.60 16 27 H 0.07 1.24 8.06 -51.93 -0.42 0.82 16 28 H 0.03 0.75 7.12 -51.93 -0.37 0.38 16 29 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 30 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 31 H 0.07 1.50 8.12 -51.93 -0.42 1.08 16 32 H 0.06 1.27 6.57 -51.93 -0.34 0.93 16 LS Contribution 262.74 15.07 3.96 3.96 Total: -1.00 -29.61 262.74 -8.26 -37.87 By element: Atomic # 1 Polarization: 3.67 SS G_CDS: -5.07 Total: -1.40 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 0.24 Total: -11.90 kcal Atomic # 7 Polarization: -38.49 SS G_CDS: -0.37 Total: -38.87 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: -4.06 SS G_CDS: -2.34 Total: -6.40 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.61 -8.26 -37.87 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307319290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.231 kcal (2) G-P(sol) polarization free energy of solvation -29.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.866 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds