Wall clock time and date at job start Mon Mar 30 2020 02:31:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 C 1.81398 * 103.00027 * 2 1 4 4 H 1.09003 * 109.50451 * 304.92174 * 3 2 1 5 5 C 1.53119 * 109.50448 * 64.99714 * 3 2 1 6 6 C 1.53120 * 109.16026 * 177.63556 * 5 3 2 7 7 C 1.53031 * 109.27889 * 302.34545 * 6 5 3 8 8 N 1.46845 * 109.52355 * 59.17893 * 7 6 5 9 9 C 1.46902 * 111.00362 * 174.15705 * 8 7 6 10 10 C 1.50706 * 109.46580 * 66.04511 * 9 8 7 11 11 H 1.07999 * 120.00193 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99398 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99350 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 120.00608 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47326 * 270.00340 * 14 12 10 16 16 H 1.48506 * 109.46545 * 30.00090 * 14 12 10 17 17 H 1.48498 * 109.47210 * 149.99801 * 14 12 10 18 18 C 1.46844 * 111.20123 * 298.25865 * 8 7 6 19 19 H 1.08995 * 109.47123 * 59.99974 * 1 2 3 20 20 H 1.09000 * 109.47099 * 180.02562 * 1 2 3 21 21 H 1.09005 * 109.47220 * 300.00053 * 1 2 3 22 22 H 1.09007 * 109.52214 * 57.73051 * 5 3 2 23 23 H 1.09003 * 109.52822 * 297.54558 * 5 3 2 24 24 H 1.09009 * 109.49913 * 182.40768 * 6 5 3 25 25 H 1.09001 * 109.50434 * 62.29276 * 6 5 3 26 26 H 1.09003 * 109.46695 * 299.16465 * 7 6 5 27 27 H 1.09005 * 109.45457 * 179.19056 * 7 6 5 28 28 H 1.09000 * 109.47263 * 306.05115 * 9 8 7 29 29 H 1.08993 * 109.47737 * 186.04677 * 9 8 7 30 30 H 0.97005 * 119.99661 * 179.97438 * 13 12 10 31 31 H 1.08996 * 109.46537 * 181.75262 * 18 8 7 32 32 H 1.09001 * 109.45812 * 301.72666 * 18 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7308 2.2544 -0.8425 5 6 1.7427 2.4028 1.3081 6 6 2.1432 3.8806 1.3253 7 6 3.6608 3.9947 1.1657 8 7 4.0692 3.3732 -0.1005 9 6 5.5006 3.5853 -0.3536 10 6 6.3086 2.8494 0.6841 11 1 5.8088 2.2807 1.4542 12 6 7.6860 2.9014 0.6495 13 7 8.3911 2.2588 1.5548 14 14 8.5506 3.8845 -0.6829 15 1 8.8018 3.0118 -1.8578 16 1 7.6938 5.0274 -1.0894 17 1 9.8432 4.3961 -0.1608 18 6 3.7375 1.9428 -0.1213 19 1 -0.3633 0.5138 -0.8899 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 2.2040 1.8905 2.1524 23 1 0.6582 2.3185 1.3781 24 1 1.8422 4.3282 2.2727 25 1 1.6506 4.4008 0.5038 26 1 4.1526 3.4862 1.9950 27 1 3.9476 5.0464 1.1632 28 1 5.7250 4.6507 -0.3004 29 1 5.7540 3.2097 -1.3449 30 1 9.3602 2.2951 1.5303 31 1 4.0800 1.5041 -1.0584 32 1 4.2288 1.4440 0.7142 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307319290.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:52 Heat of formation + Delta-G solvation = -28.617385 kcal Electronic energy + Delta-G solvation = -12933.139560 eV Core-core repulsion = 10825.475327 eV Total energy + Delta-G solvation = -2107.664233 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.88889 -35.52511 -33.89104 -31.82492 -29.90863 -29.14735 -25.55037 -24.06237 -22.84532 -20.80886 -18.91811 -17.60459 -16.66964 -16.17138 -15.99710 -15.38196 -15.01908 -14.94571 -14.55555 -14.27162 -14.13486 -13.54259 -13.33218 -12.95544 -12.84884 -12.63962 -12.30447 -11.98909 -11.80836 -11.77055 -11.59122 -11.21840 -10.81967 -10.66905 -9.09223 -8.69540 -8.33790 -6.39960 0.72083 1.35064 1.35864 1.48070 1.71619 2.32219 3.01179 3.28535 3.70383 3.86967 4.07751 4.22457 4.36675 4.40467 4.42691 4.58330 4.75991 4.78551 4.87509 4.90524 5.00089 5.02067 5.04163 5.13536 5.16667 5.36638 5.50414 6.04104 6.27952 6.34981 6.66409 7.27034 8.82714 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.042457 B = 0.008116 C = 0.007539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 659.335384 B = 3449.115003 C = 3713.231960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 S -0.326 6.326 3 C -0.029 4.029 4 H 0.103 0.897 5 C -0.108 4.108 6 C -0.102 4.102 7 C 0.055 3.945 8 N -0.524 5.524 9 C 0.160 3.840 10 C -0.554 4.554 11 H 0.031 0.969 12 C 0.009 3.991 13 N -0.948 5.948 14 Si 0.952 3.048 15 H -0.268 1.268 16 H -0.242 1.242 17 H -0.283 1.283 18 C 0.090 3.910 19 H 0.089 0.911 20 H 0.112 0.888 21 H 0.088 0.912 22 H 0.051 0.949 23 H 0.091 0.909 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.007 0.993 27 H 0.072 0.928 28 H 0.038 0.962 29 H 0.029 0.971 30 H 0.267 0.733 31 H 0.060 0.940 32 H 0.012 0.988 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.435 1.673 -3.773 16.945 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 S -0.099 6.099 3 C -0.158 4.158 4 H 0.121 0.879 5 C -0.147 4.147 6 C -0.142 4.142 7 C -0.073 4.073 8 N -0.247 5.247 9 C 0.032 3.968 10 C -0.592 4.592 11 H 0.049 0.951 12 C -0.189 4.189 13 N -0.588 5.588 14 Si 0.774 3.226 15 H -0.193 1.193 16 H -0.165 1.165 17 H -0.208 1.208 18 C -0.040 4.040 19 H 0.108 0.892 20 H 0.131 0.869 21 H 0.107 0.893 22 H 0.070 0.930 23 H 0.110 0.890 24 H 0.106 0.894 25 H 0.102 0.898 26 H 0.025 0.975 27 H 0.090 0.910 28 H 0.056 0.944 29 H 0.047 0.953 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges -15.872 0.960 -4.116 16.426 hybrid contribution 0.892 0.492 0.540 1.153 sum -14.980 1.452 -3.576 15.469 Atomic orbital electron populations 1.23417 0.90050 1.07486 1.06052 1.87207 1.11743 1.12861 1.98103 1.23098 0.98311 0.92058 1.02304 0.87912 1.21865 1.01660 0.96130 0.95048 1.21598 0.93548 0.95736 1.03286 1.22044 0.96395 0.98912 0.89992 1.62428 1.17489 1.11802 1.32994 1.20077 0.84928 0.96541 0.95260 1.21906 0.92320 1.31445 1.13568 0.95061 1.25972 0.98416 0.96204 0.98263 1.70091 1.06884 1.44572 1.37261 0.85643 0.78017 0.80023 0.78867 1.19285 1.16549 1.20843 1.21481 0.92670 0.89807 1.00018 0.89239 0.86898 0.89267 0.93046 0.89025 0.89382 0.89849 0.97459 0.90981 0.94428 0.95310 0.92465 0.92175 0.96973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.81 10.46 113.37 1.19 -0.63 16 2 S -0.33 -9.67 21.80 -56.49 -1.23 -10.90 16 3 C -0.03 -0.89 2.81 30.65 0.09 -0.81 16 4 H 0.10 2.89 8.14 -2.39 -0.02 2.87 16 5 C -0.11 -2.91 5.16 30.67 0.16 -2.75 16 6 C -0.10 -2.75 6.09 30.64 0.19 -2.57 16 7 C 0.05 2.06 5.14 86.32 0.44 2.51 16 8 N -0.52 -21.78 4.86 -900.94 -4.38 -26.16 16 9 C 0.16 7.70 4.20 85.56 0.36 8.06 16 10 C -0.55 -32.13 8.29 25.60 0.21 -31.92 16 11 H 0.03 2.04 6.08 -2.91 -0.02 2.03 16 12 C 0.01 0.56 5.47 84.66 0.46 1.02 16 13 N -0.95 -60.15 13.96 21.45 0.30 -59.85 16 14 Si 0.95 44.29 27.47 68.60 1.88 46.18 16 15 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 16 H -0.24 -10.36 6.54 99.48 0.65 -9.70 16 17 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 18 C 0.09 3.68 4.30 86.33 0.37 4.05 16 19 H 0.09 1.35 8.14 -2.39 -0.02 1.34 16 20 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 21 H 0.09 1.36 7.22 -2.39 -0.02 1.35 16 22 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 23 H 0.09 1.86 7.04 -2.39 -0.02 1.85 16 24 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 25 H 0.08 2.00 8.14 -2.39 -0.02 1.98 16 26 H 0.01 0.32 7.03 -2.39 -0.02 0.30 16 27 H 0.07 2.60 8.06 -2.38 -0.02 2.58 16 28 H 0.04 1.77 7.12 -2.39 -0.02 1.75 16 29 H 0.03 1.38 7.57 -2.39 -0.02 1.36 16 30 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 31 H 0.06 2.56 8.12 -2.39 -0.02 2.54 16 32 H 0.01 0.59 6.57 -2.39 -0.02 0.58 16 Total: -1.00 -67.40 262.74 1.06 -66.33 By element: Atomic # 1 Polarization: 6.41 SS G_CDS: 1.02 Total: 7.43 kcal Atomic # 6 Polarization: -26.50 SS G_CDS: 3.47 Total: -23.04 kcal Atomic # 7 Polarization: -81.93 SS G_CDS: -4.08 Total: -86.01 kcal Atomic # 14 Polarization: 44.29 SS G_CDS: 1.88 Total: 46.18 kcal Atomic # 16 Polarization: -9.67 SS G_CDS: -1.23 Total: -10.90 kcal Total: -67.40 1.06 -66.33 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307319290.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.717 kcal (2) G-P(sol) polarization free energy of solvation -67.396 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.617 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds