Wall clock time and date at job start Mon Mar 30 2020 02:42:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47149 * 270.00167 * 3 2 1 5 5 H 1.48499 * 109.46983 * 30.00541 * 3 2 1 6 6 H 1.48503 * 109.46941 * 150.00348 * 3 2 1 7 7 C 1.37878 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00194 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47589 * 180.02562 * 9 7 2 11 11 C 1.46843 * 110.99672 * 66.04673 * 10 9 7 12 12 C 1.53047 * 109.52082 * 174.16635 * 11 10 9 13 13 C 1.53119 * 109.27804 * 59.17724 * 12 11 10 14 14 H 1.09006 * 109.56800 * 182.40813 * 13 12 11 15 15 O 1.42901 * 109.52215 * 62.25170 * 13 12 11 16 16 C 1.53112 * 109.16146 * 302.34592 * 13 12 11 17 17 H 1.09005 * 109.50586 * 297.67600 * 16 13 12 18 18 C 1.52999 * 109.50093 * 177.59829 * 16 13 12 19 19 O 1.42903 * 109.47256 * 175.00356 * 18 16 13 20 20 C 1.46846 * 110.99652 * 301.84061 * 10 9 7 21 21 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46799 * 60.00018 * 9 7 2 23 23 H 1.09000 * 109.47175 * 300.00560 * 9 7 2 24 24 H 1.08991 * 109.46532 * 54.15095 * 11 10 9 25 25 H 1.09008 * 109.46563 * 294.17583 * 11 10 9 26 26 H 1.09000 * 109.49967 * 299.23905 * 12 11 10 27 27 H 1.09000 * 109.50376 * 179.11936 * 12 11 10 28 28 H 0.96706 * 113.99581 * 60.31388 * 15 13 12 29 29 H 1.08997 * 109.47286 * 54.99916 * 18 16 13 30 30 H 1.09008 * 109.47201 * 294.99696 * 18 16 13 31 31 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 32 32 H 1.09001 * 109.46937 * 65.81761 * 20 10 9 33 33 H 1.09001 * 109.46698 * 305.84920 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0022 11 6 3.6514 -3.2599 -1.2554 12 6 4.2995 -4.6461 -1.2825 13 6 3.8048 -5.4590 -0.0829 14 1 4.2960 -6.4320 -0.0737 15 8 2.3904 -5.6389 -0.1786 16 6 4.1386 -4.7049 1.2071 17 1 5.2199 -4.6025 1.2995 18 6 3.5947 -5.4815 2.4080 19 8 4.0061 -4.8394 3.6165 20 6 3.4952 -3.3171 1.1621 21 1 -0.4849 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8911 24 1 4.0125 -2.6736 -2.1003 25 1 2.5683 -3.3640 -1.3222 26 1 5.3832 -4.5422 -1.2297 27 1 4.0268 -5.1573 -2.2059 28 1 2.1068 -6.1106 -0.9737 29 1 3.9820 -6.5001 2.3877 30 1 2.5058 -5.5058 2.3620 31 1 3.6966 -5.2787 4.4204 32 1 2.4129 -3.4209 1.0842 33 1 3.7428 -2.7723 2.0732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307354931.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:08 Heat of formation + Delta-G solvation = -101.746378 kcal Electronic energy + Delta-G solvation = -15424.362603 eV Core-core repulsion = 12870.774388 eV Total energy + Delta-G solvation = -2553.588215 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.18168 -36.38706 -35.71175 -32.75056 -31.55213 -30.67999 -27.18243 -25.18339 -23.59491 -21.71137 -20.43031 -19.19150 -17.10599 -16.98575 -16.26563 -15.32398 -14.88170 -14.35997 -14.05228 -13.78096 -13.49947 -13.26033 -12.48748 -12.25543 -11.84018 -11.66390 -11.33005 -11.08482 -10.84349 -10.62736 -10.36248 -10.23984 -9.96611 -9.78456 -9.58082 -9.50880 -9.26738 -8.52888 -7.08170 -6.03438 -4.02360 3.31952 3.39361 3.44597 4.38803 4.45726 4.49518 5.00233 5.14898 5.19060 5.29554 5.41218 5.49681 5.62691 5.89391 5.94303 6.08039 6.12937 6.24110 6.36884 6.51394 6.74796 6.88827 7.05343 7.07836 7.16266 7.64604 7.84984 7.90281 8.15794 8.22737 8.53479 9.01763 9.59714 11.09646 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.009449 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.029909 B = 2962.569141 C = 3213.350575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.070 3.930 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.263 1.263 7 C -0.547 4.547 8 H 0.077 0.923 9 C 0.154 3.846 10 N -0.538 5.538 11 C 0.063 3.937 12 C -0.147 4.147 13 C 0.112 3.888 14 H 0.046 0.954 15 O -0.558 6.558 16 C -0.078 4.078 17 H 0.087 0.913 18 C 0.087 3.913 19 O -0.571 6.571 20 C 0.077 3.923 21 H 0.262 0.738 22 H 0.029 0.971 23 H 0.022 0.978 24 H 0.061 0.939 25 H 0.050 0.950 26 H 0.072 0.928 27 H 0.061 0.939 28 H 0.372 0.628 29 H 0.036 0.964 30 H 0.054 0.946 31 H 0.373 0.627 32 H 0.053 0.947 33 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.826 -11.725 0.698 14.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.188 1.188 7 C -0.586 4.586 8 H 0.095 0.905 9 C 0.028 3.972 10 N -0.261 5.261 11 C -0.065 4.065 12 C -0.185 4.185 13 C 0.053 3.947 14 H 0.064 0.936 15 O -0.363 6.363 16 C -0.097 4.097 17 H 0.105 0.895 18 C 0.009 3.991 19 O -0.376 6.376 20 C -0.051 4.051 21 H 0.072 0.928 22 H 0.047 0.953 23 H 0.041 0.959 24 H 0.079 0.921 25 H 0.068 0.932 26 H 0.091 0.909 27 H 0.080 0.920 28 H 0.218 0.782 29 H 0.055 0.945 30 H 0.073 0.927 31 H 0.219 0.781 32 H 0.071 0.929 33 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.489 -10.842 0.870 13.798 hybrid contribution -0.859 0.210 -0.307 0.936 sum 7.631 -10.633 0.563 13.100 Atomic orbital electron populations 1.69938 1.06338 1.26822 1.50833 1.24977 0.94692 0.99147 0.94349 0.86813 0.80519 0.83677 0.78513 1.20308 1.21346 1.18791 1.21747 0.90714 0.94775 1.51329 0.90473 1.20159 0.94664 0.85677 0.96744 1.62381 1.58648 1.03697 1.01363 1.21794 0.99162 0.92383 0.93181 1.22298 1.01513 0.97563 0.97157 1.21754 0.81582 0.96151 0.95200 0.93566 1.86605 1.22128 1.80582 1.46946 1.21248 1.01079 0.96329 0.91008 0.89523 1.22117 0.98820 0.93879 0.84328 1.86520 1.78810 1.56504 1.15725 1.21755 0.98296 0.91034 0.94004 0.92811 0.95297 0.95947 0.92053 0.93224 0.90938 0.91992 0.78200 0.94547 0.92743 0.78087 0.92898 0.91283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.14 13.96 55.43 0.77 -27.37 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 22.05 27.47 -169.99 -4.67 17.38 16 4 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 5 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 6 H -0.26 -6.41 6.54 56.52 0.37 -6.05 16 7 C -0.55 -15.82 8.29 -34.44 -0.29 -16.11 16 8 H 0.08 2.45 6.08 -52.49 -0.32 2.13 16 9 C 0.15 3.90 4.20 -4.98 -0.02 3.88 16 10 N -0.54 -11.86 4.86 -236.11 -1.15 -13.01 16 11 C 0.06 1.25 5.00 -3.83 -0.02 1.23 16 12 C -0.15 -2.20 5.80 -26.65 -0.15 -2.35 16 13 C 0.11 1.64 3.26 -26.61 -0.09 1.55 16 14 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 15 O -0.56 -8.63 11.51 -35.23 -0.41 -9.04 16 16 C -0.08 -1.31 2.42 -90.54 -0.22 -1.53 16 17 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 18 C 0.09 1.29 6.18 37.16 0.23 1.52 16 19 O -0.57 -8.56 13.22 -35.23 -0.47 -9.03 16 20 C 0.08 1.65 4.05 -3.83 -0.02 1.64 16 21 H 0.26 7.67 8.31 -40.82 -0.34 7.34 16 22 H 0.03 0.75 7.20 -51.93 -0.37 0.38 16 23 H 0.02 0.56 7.49 -51.93 -0.39 0.17 16 24 H 0.06 1.19 8.06 -51.93 -0.42 0.77 16 25 H 0.05 1.12 6.65 -51.92 -0.35 0.77 16 26 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.37 4.11 9.09 45.56 0.41 4.52 16 29 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.05 0.87 7.79 -51.92 -0.40 0.46 16 31 H 0.37 3.65 9.12 45.56 0.42 4.06 16 32 H 0.05 1.30 6.19 -51.93 -0.32 0.98 16 33 H 0.07 1.57 7.83 -51.93 -0.41 1.16 16 LS Contribution 260.97 15.07 3.93 3.93 Total: -1.00 -33.55 260.97 -6.08 -39.63 By element: Atomic # 1 Polarization: 9.09 SS G_CDS: -3.43 Total: 5.66 kcal Atomic # 6 Polarization: -7.50 SS G_CDS: -0.67 Total: -8.17 kcal Atomic # 7 Polarization: -40.00 SS G_CDS: -0.37 Total: -40.37 kcal Atomic # 8 Polarization: -17.19 SS G_CDS: -0.87 Total: -18.07 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -4.67 Total: 17.38 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -33.55 -6.08 -39.63 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307354931.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.112 kcal (2) G-P(sol) polarization free energy of solvation -33.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds