Wall clock time and date at job start Mon Mar 30 2020 02:42:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 120.00066 * 2 1 4 4 H 1.48497 * 109.47149 * 270.00167 * 3 2 1 5 5 H 1.48499 * 109.46983 * 30.00541 * 3 2 1 6 6 H 1.48503 * 109.46941 * 150.00348 * 3 2 1 7 7 C 1.37878 * 119.99904 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99810 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00194 * 179.97438 * 7 2 1 10 10 N 1.46899 * 109.47589 * 180.02562 * 9 7 2 11 11 C 1.46843 * 110.99672 * 66.04673 * 10 9 7 12 12 C 1.53047 * 109.52082 * 174.16635 * 11 10 9 13 13 C 1.53119 * 109.27804 * 59.17724 * 12 11 10 14 14 H 1.09006 * 109.56800 * 182.40813 * 13 12 11 15 15 O 1.42901 * 109.52215 * 62.25170 * 13 12 11 16 16 C 1.53112 * 109.16146 * 302.34592 * 13 12 11 17 17 H 1.09005 * 109.50586 * 297.67600 * 16 13 12 18 18 C 1.52999 * 109.50093 * 177.59829 * 16 13 12 19 19 O 1.42903 * 109.47256 * 175.00356 * 18 16 13 20 20 C 1.46846 * 110.99652 * 301.84061 * 10 9 7 21 21 H 0.96998 * 119.99671 * 359.97438 * 1 2 3 22 22 H 1.09001 * 109.46799 * 60.00018 * 9 7 2 23 23 H 1.09000 * 109.47175 * 300.00560 * 9 7 2 24 24 H 1.08991 * 109.46532 * 54.15095 * 11 10 9 25 25 H 1.09008 * 109.46563 * 294.17583 * 11 10 9 26 26 H 1.09000 * 109.49967 * 299.23905 * 12 11 10 27 27 H 1.09000 * 109.50376 * 179.11936 * 12 11 10 28 28 H 0.96706 * 113.99581 * 60.31388 * 15 13 12 29 29 H 1.08997 * 109.47286 * 54.99916 * 18 16 13 30 30 H 1.09008 * 109.47201 * 294.99696 * 18 16 13 31 31 H 0.96700 * 114.00311 * 180.02562 * 19 18 16 32 32 H 1.09001 * 109.46937 * 65.81761 * 20 10 9 33 33 H 1.09001 * 109.46698 * 305.84920 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4000 5 1 1.4467 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1941 -0.0011 10 7 4.0012 -2.5791 -0.0022 11 6 3.6514 -3.2599 -1.2554 12 6 4.2995 -4.6461 -1.2825 13 6 3.8048 -5.4590 -0.0829 14 1 4.2960 -6.4320 -0.0737 15 8 2.3904 -5.6389 -0.1786 16 6 4.1386 -4.7049 1.2071 17 1 5.2199 -4.6025 1.2995 18 6 3.5947 -5.4815 2.4080 19 8 4.0061 -4.8394 3.6165 20 6 3.4952 -3.3171 1.1621 21 1 -0.4849 0.8401 0.0004 22 1 3.8751 -0.6805 0.8889 23 1 3.8745 -0.6801 -0.8911 24 1 4.0125 -2.6736 -2.1003 25 1 2.5683 -3.3640 -1.3222 26 1 5.3832 -4.5422 -1.2297 27 1 4.0268 -5.1573 -2.2059 28 1 2.1068 -6.1106 -0.9737 29 1 3.9820 -6.5001 2.3877 30 1 2.5058 -5.5058 2.3620 31 1 3.6966 -5.2787 4.4204 32 1 2.4129 -3.4209 1.0842 33 1 3.7428 -2.7723 2.0732 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307354931.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:07 Heat of formation + Delta-G solvation = -132.535132 kcal Electronic energy + Delta-G solvation = -15425.697703 eV Core-core repulsion = 12870.774388 eV Total energy + Delta-G solvation = -2554.923315 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.58817 -37.62930 -37.19093 -34.76031 -33.17450 -32.12755 -29.16964 -26.55770 -25.40471 -23.21403 -22.09268 -20.70956 -19.02734 -18.25431 -17.62540 -16.94786 -16.33666 -16.07693 -15.69553 -15.25118 -14.96595 -14.76080 -14.37526 -13.86741 -13.44385 -13.25675 -13.10858 -12.65968 -12.45155 -12.14717 -12.00163 -11.92021 -11.80927 -11.62671 -11.17508 -10.81173 -10.79142 -10.61437 -8.98126 -8.33029 -6.38185 1.32309 1.34725 1.47316 2.32189 3.01150 3.21850 3.29814 3.54648 3.90351 4.00918 4.18763 4.22208 4.41850 4.58865 4.66620 4.70631 4.79086 4.90678 4.92354 4.97496 5.00475 5.15262 5.23272 5.30730 5.37758 5.55444 6.10313 6.34090 6.45651 6.68810 6.95379 6.97852 7.28255 8.83604 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033088 B = 0.009449 C = 0.008712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 846.029909 B = 2962.569141 C = 3213.350575 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.008 3.992 3 Si 0.951 3.049 4 H -0.263 1.263 5 H -0.282 1.282 6 H -0.249 1.249 7 C -0.548 4.548 8 H 0.032 0.968 9 C 0.159 3.841 10 N -0.532 5.532 11 C 0.061 3.939 12 C -0.138 4.138 13 C 0.113 3.887 14 H 0.092 0.908 15 O -0.584 6.584 16 C -0.078 4.078 17 H 0.097 0.903 18 C 0.091 3.909 19 O -0.592 6.592 20 C 0.087 3.913 21 H 0.266 0.734 22 H 0.024 0.976 23 H 0.031 0.969 24 H 0.063 0.937 25 H 0.011 0.989 26 H 0.089 0.911 27 H 0.094 0.906 28 H 0.390 0.610 29 H 0.075 0.925 30 H 0.034 0.966 31 H 0.395 0.605 32 H 0.007 0.993 33 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.203 -12.599 0.256 16.215 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.190 4.190 3 Si 0.774 3.226 4 H -0.187 1.187 5 H -0.208 1.208 6 H -0.173 1.173 7 C -0.587 4.587 8 H 0.050 0.950 9 C 0.032 3.968 10 N -0.255 5.255 11 C -0.067 4.067 12 C -0.175 4.175 13 C 0.055 3.945 14 H 0.110 0.890 15 O -0.392 6.392 16 C -0.097 4.097 17 H 0.115 0.885 18 C 0.013 3.987 19 O -0.401 6.401 20 C -0.042 4.042 21 H 0.075 0.925 22 H 0.042 0.958 23 H 0.049 0.951 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.107 0.893 27 H 0.112 0.888 28 H 0.239 0.761 29 H 0.093 0.907 30 H 0.052 0.948 31 H 0.244 0.756 32 H 0.026 0.974 33 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 10.873 -11.756 0.427 16.019 hybrid contribution -1.676 0.409 -0.149 1.731 sum 9.197 -11.347 0.278 14.609 Atomic orbital electron populations 1.70091 1.08334 1.28144 1.52292 1.25972 0.95611 1.03530 0.93846 0.85647 0.79395 0.78142 0.79387 1.18749 1.20773 1.17265 1.21897 0.92715 0.93190 1.50899 0.95023 1.20034 0.91959 0.88210 0.96635 1.62443 1.57757 1.02569 1.02749 1.21885 0.97398 0.95546 0.91915 1.22286 1.01923 0.94275 0.99055 1.21844 0.81498 0.97741 0.93458 0.89026 1.86583 1.23003 1.81203 1.48380 1.21302 1.01102 0.93648 0.93628 0.88532 1.22057 0.97672 0.95259 0.83679 1.86466 1.79023 1.57699 1.16866 1.21616 0.95951 0.93885 0.92713 0.92504 0.95816 0.95085 0.91872 0.97079 0.89257 0.88770 0.76082 0.90735 0.94754 0.75593 0.97446 0.93634 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.29 13.96 21.45 0.30 -60.99 16 2 C 0.01 0.49 5.47 84.66 0.46 0.95 16 3 Si 0.95 45.76 27.47 68.60 1.88 47.64 16 4 H -0.26 -11.98 7.11 99.48 0.71 -11.28 16 5 H -0.28 -13.26 7.11 99.48 0.71 -12.55 16 6 H -0.25 -11.32 6.54 99.48 0.65 -10.67 16 7 C -0.55 -33.06 8.29 25.60 0.21 -32.85 16 8 H 0.03 2.15 6.08 -2.91 -0.02 2.13 16 9 C 0.16 8.16 4.20 85.56 0.36 8.51 16 10 N -0.53 -23.63 4.86 -900.92 -4.38 -28.01 16 11 C 0.06 2.39 5.00 86.33 0.43 2.82 16 12 C -0.14 -3.69 5.80 30.65 0.18 -3.51 16 13 C 0.11 2.98 3.26 30.67 0.10 3.08 16 14 H 0.09 1.71 8.14 -2.38 -0.02 1.69 16 15 O -0.58 -17.49 11.51 -148.98 -1.72 -19.20 16 16 C -0.08 -2.50 2.42 -10.74 -0.03 -2.53 16 17 H 0.10 2.94 8.14 -2.38 -0.02 2.92 16 18 C 0.09 2.57 6.18 71.98 0.45 3.02 16 19 O -0.59 -17.08 13.22 -148.98 -1.97 -19.05 16 20 C 0.09 3.81 4.05 86.33 0.35 4.16 16 21 H 0.27 15.99 8.31 -92.71 -0.77 15.22 16 22 H 0.02 1.23 7.20 -2.39 -0.02 1.22 16 23 H 0.03 1.53 7.49 -2.39 -0.02 1.51 16 24 H 0.06 2.40 8.06 -2.39 -0.02 2.38 16 25 H 0.01 0.51 6.65 -2.38 -0.02 0.49 16 26 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 27 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.39 8.00 9.09 -74.05 -0.67 7.32 16 29 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.03 1.09 7.79 -2.38 -0.02 1.08 16 31 H 0.39 7.15 9.12 -74.06 -0.68 6.48 16 32 H 0.01 0.38 6.19 -2.39 -0.01 0.37 16 33 H 0.05 2.15 7.83 -2.39 -0.02 2.13 16 Total: -1.00 -76.21 260.97 -3.66 -79.87 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: -0.29 Total: 16.08 kcal Atomic # 6 Polarization: -18.85 SS G_CDS: 2.51 Total: -16.34 kcal Atomic # 7 Polarization: -84.92 SS G_CDS: -4.08 Total: -89.00 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -3.68 Total: -38.26 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 1.88 Total: 47.64 kcal Total: -76.21 -3.66 -79.87 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307354931.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.668 kcal (2) G-P(sol) polarization free energy of solvation -76.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.868 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.535 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds