Wall clock time and date at job start Mon Mar 30 2020 03:22:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47192 * 2 1 4 4 C 1.50697 * 109.47117 * 239.99000 * 2 1 3 5 5 H 1.08001 * 120.00286 * 240.00193 * 4 2 1 6 6 C 1.37878 * 119.99568 * 60.00592 * 4 2 1 7 7 N 1.31516 * 120.00252 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 119.99967 * 179.97438 * 6 4 2 9 9 H 1.48499 * 109.46770 * 359.97438 * 8 6 4 10 10 H 1.48498 * 109.47119 * 119.99935 * 8 6 4 11 11 H 1.48494 * 109.47352 * 240.00046 * 8 6 4 12 12 N 1.46900 * 109.46704 * 119.99581 * 2 1 3 13 13 C 1.48564 * 111.00270 * 64.70249 * 12 2 1 14 14 C 1.54385 * 104.59245 * 159.03705 * 13 12 2 15 15 H 1.08998 * 110.32137 * 95.04614 * 14 13 12 16 16 O 1.42902 * 110.31973 * 217.25224 * 14 13 12 17 17 C 1.54260 * 105.06110 * 336.14925 * 14 13 12 18 18 C 1.48561 * 110.99989 * 180.12533 * 12 2 1 19 19 H 1.09002 * 110.41021 * 319.73709 * 18 12 2 20 20 C 1.52995 * 110.41193 * 82.17664 * 18 12 2 21 21 O 1.42906 * 109.47019 * 64.64519 * 20 18 12 22 22 H 1.08997 * 109.46953 * 53.74244 * 1 2 3 23 23 H 1.09004 * 109.47194 * 173.73727 * 1 2 3 24 24 H 1.08999 * 109.47324 * 293.73976 * 1 2 3 25 25 H 0.96996 * 119.99786 * 180.02562 * 7 6 4 26 26 H 1.08998 * 110.41131 * 277.82039 * 13 12 2 27 27 H 1.09006 * 110.40713 * 40.26317 * 13 12 2 28 28 H 0.96691 * 114.00242 * 298.54521 * 16 14 13 29 29 H 1.09004 * 110.32067 * 118.89955 * 17 14 13 30 30 H 1.08995 * 110.32445 * 241.09992 * 17 14 13 31 31 H 1.09001 * 109.47166 * 184.64258 * 20 18 12 32 32 H 1.08997 * 109.47669 * 304.64104 * 20 18 12 33 33 H 0.96699 * 113.99962 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7106 -1.2303 5 1 2.6532 -1.5887 -1.1311 6 6 1.6993 -0.2396 -2.4826 7 7 0.9428 0.8294 -2.6034 8 14 2.3225 -1.1200 -4.0078 9 1 3.1483 -2.2861 -3.6034 10 1 1.1678 -1.5870 -4.8163 11 1 3.1473 -0.1864 -4.8160 12 7 2.0196 -0.6924 1.1995 13 6 1.6382 -2.1281 1.1785 14 6 2.6296 -2.8081 2.1472 15 1 2.1892 -2.8944 3.1405 16 8 3.0005 -4.0969 1.6538 17 6 3.8573 -1.8750 2.1846 18 6 3.5046 -0.7097 1.2355 19 1 3.9068 -0.8955 0.2395 20 6 4.0403 0.6116 1.7905 21 8 3.6343 0.7553 3.1531 22 1 -0.3633 0.6078 -0.8287 23 1 -0.3634 -1.0216 -0.1121 24 1 -0.3634 0.4137 0.9407 25 1 0.7083 1.1605 -3.4845 26 1 0.6147 -2.2548 1.5311 27 1 1.7484 -2.5360 0.1736 28 1 2.2601 -4.7126 1.5662 29 1 4.0197 -1.5033 3.1964 30 1 4.7429 -2.4000 1.8267 31 1 5.1288 0.6149 1.7335 32 1 3.6433 1.4399 1.2038 33 1 3.9397 1.5724 3.5704 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307472123.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:22:53 Heat of formation + Delta-G solvation = -120.173594 kcal Electronic energy + Delta-G solvation = -15609.307867 eV Core-core repulsion = 13054.920588 eV Total energy + Delta-G solvation = -2554.387279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.51447 -37.54611 -37.00409 -34.96100 -32.70572 -30.39417 -29.00414 -27.25455 -25.83598 -23.12553 -21.26147 -20.85156 -18.73506 -18.26727 -17.84990 -17.07758 -16.33779 -15.66981 -15.34273 -15.02077 -14.60256 -14.25395 -14.06445 -13.81586 -13.39726 -13.10328 -12.97897 -12.64475 -12.34477 -12.16946 -12.00033 -11.75465 -11.59982 -11.47761 -11.22154 -10.79623 -10.68090 -10.50713 -9.06925 -8.08532 -6.28477 1.34360 1.37966 1.47927 2.37992 3.12409 3.18831 3.54561 3.65626 3.82965 4.01707 4.21172 4.50641 4.54137 4.60321 4.78977 4.79856 4.90981 5.00708 5.06922 5.10658 5.20002 5.22298 5.39894 5.50622 5.63977 5.93579 6.12866 6.32639 6.40476 6.90611 6.92743 7.09223 7.41791 8.89744 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.027251 B = 0.011489 C = 0.010059 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.230589 B = 2436.554122 C = 2782.858164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.200 3.800 3 H 0.008 0.992 4 C -0.547 4.547 5 H 0.052 0.948 6 C 0.023 3.977 7 N -0.912 5.912 8 Si 0.947 3.053 9 H -0.273 1.273 10 H -0.280 1.280 11 H -0.280 1.280 12 N -0.496 5.496 13 C 0.006 3.994 14 C 0.105 3.895 15 H 0.077 0.923 16 O -0.580 6.580 17 C -0.102 4.102 18 C 0.056 3.944 19 H 0.051 0.949 20 C 0.103 3.897 21 O -0.570 6.570 22 H 0.057 0.943 23 H 0.026 0.974 24 H 0.028 0.972 25 H 0.262 0.738 26 H 0.072 0.928 27 H 0.044 0.956 28 H 0.392 0.608 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.028 0.972 33 H 0.388 0.612 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.354 -3.754 8.431 10.204 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.093 3.907 3 H 0.026 0.974 4 C -0.586 4.586 5 H 0.070 0.930 6 C -0.177 4.177 7 N -0.551 5.551 8 Si 0.773 3.227 9 H -0.198 1.198 10 H -0.206 1.206 11 H -0.206 1.206 12 N -0.220 5.220 13 C -0.123 4.123 14 C 0.046 3.954 15 H 0.095 0.905 16 O -0.387 6.387 17 C -0.140 4.140 18 C -0.053 4.053 19 H 0.068 0.932 20 C 0.024 3.976 21 O -0.376 6.376 22 H 0.075 0.925 23 H 0.045 0.955 24 H 0.047 0.953 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.062 0.938 28 H 0.241 0.759 29 H 0.113 0.887 30 H 0.089 0.911 31 H 0.083 0.917 32 H 0.046 0.954 33 H 0.236 0.764 Dipole moment (debyes) X Y Z Total from point charges 4.347 -3.649 8.633 10.331 hybrid contribution 0.038 -0.196 -1.946 1.956 sum 4.385 -3.845 6.687 8.873 Atomic orbital electron populations 1.21536 0.97380 0.99299 0.98933 1.19187 0.92701 0.93102 0.85758 0.97382 1.21884 1.31618 1.12587 0.92536 0.92982 1.25606 0.95092 0.95503 1.01545 1.70020 1.37279 1.23836 1.23984 0.85679 0.78214 0.78729 0.80067 1.19753 1.20572 1.20552 1.65696 1.07476 1.10705 1.38170 1.23715 0.99220 0.90458 0.98898 1.22521 0.94667 0.82520 0.95664 0.90481 1.86469 1.39576 1.23952 1.88741 1.22214 0.97108 0.93775 1.00917 1.22680 0.90323 0.95030 0.97225 0.93150 1.21851 0.97178 0.95796 0.82751 1.86491 1.80092 1.46063 1.24998 0.92457 0.95527 0.95343 0.92855 0.90984 0.93768 0.75880 0.88702 0.91138 0.91688 0.95407 0.76361 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.63 8.70 71.98 0.63 -5.00 16 2 C 0.20 10.21 2.36 44.17 0.10 10.32 16 3 H 0.01 0.47 7.29 -2.39 -0.02 0.45 16 4 C -0.55 -29.60 6.50 25.60 0.17 -29.43 16 5 H 0.05 2.87 5.68 -2.91 -0.02 2.85 16 6 C 0.02 1.24 5.30 84.65 0.45 1.69 16 7 N -0.91 -51.98 11.39 21.45 0.24 -51.73 16 8 Si 0.95 43.58 29.54 68.60 2.03 45.61 16 9 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 12 N -0.50 -21.67 5.05 -836.07 -4.22 -25.89 16 13 C 0.01 0.24 5.07 86.45 0.44 0.67 16 14 C 0.11 3.49 4.42 31.49 0.14 3.63 16 15 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 16 O -0.58 -18.02 13.27 -148.98 -1.98 -20.00 16 17 C -0.10 -3.47 6.25 31.49 0.20 -3.27 16 18 C 0.06 2.23 2.50 45.06 0.11 2.34 16 19 H 0.05 2.28 6.25 -2.39 -0.01 2.26 16 20 C 0.10 3.47 6.91 71.98 0.50 3.97 16 21 O -0.57 -17.37 12.34 -148.98 -1.84 -19.21 16 22 H 0.06 3.10 6.26 -2.39 -0.01 3.08 16 23 H 0.03 1.26 7.38 -2.39 -0.02 1.25 16 24 H 0.03 1.29 8.14 -2.39 -0.02 1.27 16 25 H 0.26 14.19 8.31 -92.71 -0.77 13.42 16 26 H 0.07 2.71 7.85 -2.39 -0.02 2.69 16 27 H 0.04 1.99 5.82 -2.38 -0.01 1.97 16 28 H 0.39 8.65 9.11 -74.06 -0.67 7.97 16 29 H 0.09 2.99 6.88 -2.38 -0.02 2.98 16 30 H 0.07 2.33 7.98 -2.39 -0.02 2.31 16 31 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 32 H 0.03 1.05 7.29 -2.39 -0.02 1.03 16 33 H 0.39 7.71 9.12 -74.06 -0.68 7.04 16 Total: -1.00 -64.02 260.57 -3.26 -67.28 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: -0.22 Total: 19.04 kcal Atomic # 6 Polarization: -17.82 SS G_CDS: 2.73 Total: -15.09 kcal Atomic # 7 Polarization: -73.65 SS G_CDS: -3.97 Total: -77.63 kcal Atomic # 8 Polarization: -35.39 SS G_CDS: -3.82 Total: -39.20 kcal Atomic # 14 Polarization: 43.58 SS G_CDS: 2.03 Total: 45.61 kcal Total: -64.02 -3.26 -67.28 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307472123.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.897 kcal (2) G-P(sol) polarization free energy of solvation -64.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.258 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds