Wall clock time and date at job start Mon Mar 30 2020 02:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46845 * 110.99366 * 294.20819 * 10 9 7 12 12 C 1.53043 * 109.51939 * 174.16193 * 11 10 9 13 13 C 1.53112 * 109.27753 * 59.17975 * 12 11 10 14 14 C 1.53120 * 109.16185 * 302.34418 * 13 12 11 15 15 O 1.42901 * 109.53625 * 297.69651 * 14 13 12 16 16 C 1.52999 * 109.50348 * 177.59774 * 14 13 12 17 17 O 1.42901 * 109.47263 * 60.19579 * 16 14 13 18 18 C 1.46842 * 110.99948 * 169.99992 * 10 9 7 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.08996 * 109.46529 * 294.17243 * 11 10 9 23 23 H 1.08999 * 109.46597 * 54.14548 * 11 10 9 24 24 H 1.09002 * 109.50498 * 299.23479 * 12 11 10 25 25 H 1.09003 * 109.53221 * 179.14339 * 12 11 10 26 26 H 1.09000 * 109.52072 * 182.43959 * 13 12 11 27 27 H 1.08998 * 109.52700 * 62.25604 * 13 12 11 28 28 H 0.96698 * 113.99726 * 299.82537 * 15 14 13 29 29 H 1.09001 * 109.47129 * 180.19247 * 16 14 13 30 30 H 1.08998 * 109.47257 * 300.19885 * 16 14 13 31 31 H 0.96702 * 114.00325 * 179.97438 * 17 16 14 32 32 H 1.09003 * 109.46286 * 305.85204 * 18 10 9 33 33 H 1.09000 * 109.46307 * 65.83324 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9746 -3.6504 -1.2509 12 6 4.0545 -4.7309 -1.1573 13 6 3.3913 -6.0879 -0.9064 14 6 2.5576 -6.0105 0.3756 15 8 3.4131 -5.7332 1.4860 16 6 1.8434 -7.3446 0.6017 17 8 2.8117 -8.3875 0.7305 18 6 1.5211 -4.8931 0.2375 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5570 0.8898 21 1 0.6239 -2.5567 -0.8903 22 1 2.3066 -3.8758 -2.0822 23 1 3.4444 -2.6807 -1.4154 24 1 4.7311 -4.4988 -0.3349 25 1 4.6157 -4.7671 -2.0911 26 1 4.1591 -6.8536 -0.7959 27 1 2.7444 -6.3383 -1.7472 28 1 4.0960 -6.4019 1.6330 29 1 1.2473 -7.2878 1.5126 30 1 1.1920 -7.5563 -0.2462 31 1 2.4292 -9.2636 0.8767 32 1 0.9352 -4.8258 1.1542 33 1 0.8600 -5.1127 -0.6008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307543979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:13 Heat of formation + Delta-G solvation = -103.050516 kcal Electronic energy + Delta-G solvation = -15231.846106 eV Core-core repulsion = 12678.201340 eV Total energy + Delta-G solvation = -2553.644766 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.31923 -36.64124 -35.13381 -32.97663 -31.61325 -30.44645 -27.03573 -25.55001 -23.67072 -21.90963 -20.56881 -19.29299 -17.46084 -16.32359 -16.03705 -15.54107 -14.69619 -14.40451 -14.21537 -13.94170 -13.58567 -12.87509 -12.47303 -12.19842 -12.06196 -11.81753 -11.35289 -11.10247 -10.79696 -10.61748 -10.57306 -10.29288 -10.14539 -9.99868 -9.60084 -9.35757 -9.10990 -8.38582 -7.11142 -5.98192 -3.98882 3.37439 3.40784 3.44631 4.04681 4.48121 4.52751 4.96014 5.07957 5.13773 5.28622 5.37576 5.43543 5.54182 5.75948 5.85374 6.03440 6.14398 6.20694 6.24019 6.33375 6.48308 6.82575 6.83193 7.34272 7.38483 7.46208 7.85746 8.09300 8.18129 8.28662 8.62133 9.08727 9.64902 11.12854 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055959 B = 0.007226 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.245336 B = 3874.187695 C = 4057.667715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.054 3.946 3 Si 0.899 3.101 4 H -0.288 1.288 5 H -0.276 1.276 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.063 0.937 9 C 0.193 3.807 10 N -0.523 5.523 11 C 0.064 3.936 12 C -0.115 4.115 13 C -0.138 4.138 14 C 0.144 3.856 15 O -0.532 6.532 16 C 0.048 3.952 17 O -0.573 6.573 18 C 0.071 3.929 19 H 0.261 0.739 20 H 0.030 0.970 21 H -0.011 1.011 22 H 0.015 0.985 23 H 0.084 0.916 24 H 0.073 0.927 25 H 0.056 0.944 26 H 0.065 0.935 27 H 0.059 0.941 28 H 0.367 0.633 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.378 0.622 32 H 0.074 0.926 33 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.049 -14.512 -1.184 15.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.147 4.147 3 Si 0.727 3.273 4 H -0.214 1.214 5 H -0.201 1.201 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.082 0.918 9 C 0.068 3.932 10 N -0.247 5.247 11 C -0.065 4.065 12 C -0.152 4.152 13 C -0.176 4.176 14 C 0.102 3.898 15 O -0.336 6.336 16 C -0.030 4.030 17 O -0.378 6.378 18 C -0.058 4.058 19 H 0.071 0.929 20 H 0.048 0.952 21 H 0.007 0.993 22 H 0.034 0.966 23 H 0.102 0.898 24 H 0.092 0.908 25 H 0.074 0.926 26 H 0.084 0.916 27 H 0.078 0.922 28 H 0.213 0.787 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.225 0.775 32 H 0.093 0.907 33 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges 4.233 -13.253 -0.847 13.938 hybrid contribution -0.401 -0.243 -0.674 0.821 sum 3.831 -13.496 -1.521 14.112 Atomic orbital electron populations 1.69955 1.06068 1.26814 1.51237 1.24991 0.94873 0.99301 0.95517 0.86543 0.79410 0.82692 0.78663 1.21404 1.20133 1.20309 1.21133 0.93528 0.89881 1.49775 0.91839 1.19725 0.90056 0.87420 0.95958 1.61898 1.27432 1.01671 1.33708 1.21972 0.94968 0.99236 0.90300 1.21573 0.98552 0.94008 1.01103 1.22148 0.99728 0.98371 0.97324 1.21249 0.90766 0.91000 0.86800 1.86708 1.47007 1.50787 1.49066 1.22986 0.91294 0.88497 1.00252 1.86390 1.36290 1.19193 1.95910 1.21874 0.93331 0.90158 1.00481 0.92933 0.95186 0.99287 0.96637 0.89755 0.90826 0.92566 0.91589 0.92190 0.78718 0.92766 0.93128 0.77545 0.90743 0.94873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.26 13.29 55.43 0.74 -26.53 16 2 C 0.05 1.57 5.46 -17.82 -0.10 1.47 16 3 Si 0.90 22.11 29.54 -169.99 -5.02 17.09 16 4 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 5 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.50 -14.61 8.43 -34.44 -0.29 -14.90 16 8 H 0.06 1.83 7.12 -52.49 -0.37 1.45 16 9 C 0.19 5.23 4.72 -4.98 -0.02 5.20 16 10 N -0.52 -11.95 4.53 -236.12 -1.07 -13.02 16 11 C 0.06 1.30 5.30 -3.83 -0.02 1.28 16 12 C -0.11 -1.91 5.94 -26.65 -0.16 -2.07 16 13 C -0.14 -2.06 4.81 -26.61 -0.13 -2.19 16 14 C 0.14 2.28 0.81 -90.54 -0.07 2.21 16 15 O -0.53 -9.19 12.31 -44.86 -0.55 -9.75 16 16 C 0.05 0.60 6.17 37.16 0.23 0.83 16 17 O -0.57 -6.23 12.54 -44.86 -0.56 -6.80 16 18 C 0.07 1.35 4.43 -3.84 -0.02 1.33 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.03 0.87 7.99 -51.93 -0.41 0.45 16 21 H -0.01 -0.30 8.12 -51.93 -0.42 -0.72 16 22 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 23 H 0.08 1.87 6.70 -51.93 -0.35 1.52 16 24 H 0.07 1.31 7.80 -51.93 -0.41 0.90 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 26 H 0.07 0.91 7.77 -51.93 -0.40 0.51 16 27 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 28 H 0.37 5.10 8.57 45.56 0.39 5.49 16 29 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 31 H 0.38 2.32 9.12 45.56 0.42 2.74 16 32 H 0.07 1.45 8.02 -51.93 -0.42 1.04 16 33 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 267.95 15.07 4.04 4.04 Total: -1.00 -32.54 267.95 -6.66 -39.20 By element: Atomic # 1 Polarization: 6.25 SS G_CDS: -3.65 Total: 2.60 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: -0.58 Total: -6.84 kcal Atomic # 7 Polarization: -39.21 SS G_CDS: -0.33 Total: -39.55 kcal Atomic # 8 Polarization: -15.43 SS G_CDS: -1.11 Total: -16.54 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.54 -6.66 -39.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307543979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.853 kcal (2) G-P(sol) polarization free energy of solvation -32.539 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.392 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.198 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.051 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds