Wall clock time and date at job start Mon Mar 30 2020 02:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48490 * 109.47339 * 359.97438 * 3 2 1 5 5 H 1.48493 * 109.47239 * 120.00357 * 3 2 1 6 6 H 1.48504 * 109.46636 * 239.99916 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99349 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00472 * 359.97438 * 7 2 1 10 10 N 1.46903 * 109.47330 * 180.02562 * 9 7 2 11 11 C 1.46845 * 110.99366 * 294.20819 * 10 9 7 12 12 C 1.53043 * 109.51939 * 174.16193 * 11 10 9 13 13 C 1.53112 * 109.27753 * 59.17975 * 12 11 10 14 14 C 1.53120 * 109.16185 * 302.34418 * 13 12 11 15 15 O 1.42901 * 109.53625 * 297.69651 * 14 13 12 16 16 C 1.52999 * 109.50348 * 177.59774 * 14 13 12 17 17 O 1.42901 * 109.47263 * 60.19579 * 16 14 13 18 18 C 1.46842 * 110.99948 * 169.99992 * 10 9 7 19 19 H 0.97005 * 119.99661 * 359.97438 * 1 2 3 20 20 H 1.09005 * 109.46730 * 299.99869 * 9 7 2 21 21 H 1.08998 * 109.47044 * 59.99820 * 9 7 2 22 22 H 1.08996 * 109.46529 * 294.17243 * 11 10 9 23 23 H 1.08999 * 109.46597 * 54.14548 * 11 10 9 24 24 H 1.09002 * 109.50498 * 299.23479 * 12 11 10 25 25 H 1.09003 * 109.53221 * 179.14339 * 12 11 10 26 26 H 1.09000 * 109.52072 * 182.43959 * 13 12 11 27 27 H 1.08998 * 109.52700 * 62.25604 * 13 12 11 28 28 H 0.96698 * 113.99726 * 299.82537 * 15 14 13 29 29 H 1.09001 * 109.47129 * 180.19247 * 16 14 13 30 30 H 1.08998 * 109.47257 * 300.19885 * 16 14 13 31 31 H 0.96702 * 114.00325 * 179.97438 * 17 16 14 32 32 H 1.09003 * 109.46286 * 305.85204 * 18 10 9 33 33 H 1.09000 * 109.46307 * 65.83324 * 18 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 1.2843 2.7464 -0.0006 5 1 3.1029 1.6964 1.2124 6 1 3.1029 1.6962 -1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1941 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 7 2.2054 -3.6158 -0.0005 11 6 2.9746 -3.6504 -1.2509 12 6 4.0545 -4.7309 -1.1573 13 6 3.3913 -6.0879 -0.9064 14 6 2.5576 -6.0105 0.3756 15 8 3.4131 -5.7332 1.4860 16 6 1.8434 -7.3446 0.6017 17 8 2.8117 -8.3875 0.7305 18 6 1.5211 -4.8931 0.2375 19 1 -0.4850 0.8401 0.0004 20 1 0.6246 -2.5570 0.8898 21 1 0.6239 -2.5567 -0.8903 22 1 2.3066 -3.8758 -2.0822 23 1 3.4444 -2.6807 -1.4154 24 1 4.7311 -4.4988 -0.3349 25 1 4.6157 -4.7671 -2.0911 26 1 4.1591 -6.8536 -0.7959 27 1 2.7444 -6.3383 -1.7472 28 1 4.0960 -6.4019 1.6330 29 1 1.2473 -7.2878 1.5126 30 1 1.1920 -7.5563 -0.2462 31 1 2.4292 -9.2636 0.8767 32 1 0.9352 -4.8258 1.1542 33 1 0.8600 -5.1127 -0.6008 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307543979.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:34:12 Heat of formation + Delta-G solvation = -130.833403 kcal Electronic energy + Delta-G solvation = -15233.050863 eV Core-core repulsion = 12678.201340 eV Total energy + Delta-G solvation = -2554.849523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -40.66720 -37.89022 -36.41480 -34.94035 -33.32131 -31.79069 -29.04377 -26.78055 -25.50032 -23.50091 -22.18245 -20.71156 -18.57264 -18.24685 -17.37167 -17.10238 -16.29853 -15.70548 -15.61763 -15.57087 -15.20344 -14.38584 -14.15562 -13.62797 -13.49671 -13.38605 -13.03079 -12.75530 -12.60385 -12.48491 -12.22720 -11.86044 -11.68629 -11.45565 -11.10125 -10.88102 -10.64384 -10.55025 -8.95225 -8.21430 -6.31731 1.39954 1.44038 1.51971 2.39701 2.97648 3.10798 3.30676 3.59535 3.82549 3.87878 4.08904 4.30206 4.38280 4.46834 4.54445 4.63278 4.70479 4.79580 4.94146 4.95433 5.06203 5.16118 5.23585 5.36380 5.46440 5.63941 6.04469 6.36848 6.63213 6.83953 6.86422 7.03667 7.37783 8.89643 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055959 B = 0.007226 C = 0.006899 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.245336 B = 3874.187695 C = 4057.667715 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.972 3.028 4 H -0.280 1.280 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.525 4.525 8 H 0.060 0.940 9 C 0.208 3.792 10 N -0.536 5.536 11 C 0.063 3.937 12 C -0.106 4.106 13 C -0.131 4.131 14 C 0.142 3.858 15 O -0.556 6.556 16 C 0.060 3.940 17 O -0.579 6.579 18 C 0.065 3.935 19 H 0.265 0.735 20 H 0.000 1.000 21 H -0.036 1.036 22 H 0.016 0.984 23 H 0.059 0.941 24 H 0.061 0.939 25 H 0.083 0.917 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.382 0.618 29 H 0.054 0.946 30 H 0.067 0.933 31 H 0.401 0.599 32 H 0.060 0.940 33 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.290 -15.624 -1.656 16.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.796 3.204 4 H -0.205 1.205 5 H -0.195 1.195 6 H -0.191 1.191 7 C -0.563 4.563 8 H 0.078 0.922 9 C 0.082 3.918 10 N -0.260 5.260 11 C -0.066 4.066 12 C -0.144 4.144 13 C -0.168 4.168 14 C 0.101 3.899 15 O -0.363 6.363 16 C -0.019 4.019 17 O -0.387 6.387 18 C -0.064 4.064 19 H 0.074 0.926 20 H 0.019 0.981 21 H -0.019 1.019 22 H 0.034 0.966 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.101 0.899 26 H 0.105 0.895 27 H 0.090 0.910 28 H 0.230 0.770 29 H 0.073 0.927 30 H 0.086 0.914 31 H 0.251 0.749 32 H 0.079 0.921 33 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 5.487 -14.419 -1.319 15.484 hybrid contribution -0.806 0.040 -0.511 0.955 sum 4.682 -14.379 -1.830 15.232 Atomic orbital electron populations 1.70081 1.07724 1.28032 1.51704 1.25939 0.95809 1.03250 0.94685 0.85402 0.78158 0.77734 0.79122 1.20535 1.19504 1.19078 1.21418 0.93530 0.91141 1.50241 0.92170 1.19371 0.90099 0.89087 0.93253 1.61815 1.26790 1.02241 1.35202 1.22003 0.95638 0.99679 0.89232 1.21508 0.97136 0.93639 1.02082 1.22107 1.00145 0.97515 0.97056 1.21195 0.90165 0.91421 0.87134 1.86659 1.47869 1.52099 1.49659 1.22673 0.90938 0.87205 1.01036 1.86322 1.36221 1.20248 1.95950 1.21977 0.94593 0.89695 1.00115 0.92599 0.98146 1.01872 0.96591 0.92221 0.92022 0.89861 0.89515 0.91013 0.77035 0.92746 0.91441 0.74858 0.92113 0.93941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.76 13.29 21.45 0.28 -57.47 16 2 C 0.00 0.06 5.46 84.66 0.46 0.52 16 3 Si 0.97 45.60 29.54 68.60 2.03 47.63 16 4 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 5 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 6 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 7 C -0.53 -31.25 8.43 25.60 0.22 -31.04 16 8 H 0.06 3.54 7.12 -2.91 -0.02 3.52 16 9 C 0.21 11.76 4.72 85.55 0.40 12.16 16 10 N -0.54 -25.08 4.53 -900.94 -4.08 -29.16 16 11 C 0.06 2.57 5.30 86.33 0.46 3.03 16 12 C -0.11 -3.35 5.94 30.65 0.18 -3.17 16 13 C -0.13 -3.53 4.81 30.67 0.15 -3.38 16 14 C 0.14 4.27 0.81 -10.74 -0.01 4.26 16 15 O -0.56 -18.52 12.31 -139.77 -1.72 -20.25 16 16 C 0.06 1.32 6.17 71.98 0.44 1.77 16 17 O -0.58 -10.49 12.54 -139.77 -1.75 -12.24 16 18 C 0.06 2.49 4.43 86.33 0.38 2.87 16 19 H 0.27 15.35 8.31 -92.70 -0.77 14.58 16 20 H 0.00 0.03 7.99 -2.38 -0.02 0.01 16 21 H -0.04 -2.18 8.12 -2.39 -0.02 -2.20 16 22 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 23 H 0.06 2.70 6.70 -2.39 -0.02 2.69 16 24 H 0.06 2.11 7.80 -2.39 -0.02 2.09 16 25 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 26 H 0.09 2.05 7.77 -2.39 -0.02 2.03 16 27 H 0.07 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.38 9.84 8.57 -74.06 -0.63 9.21 16 29 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.07 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.40 3.38 9.12 -74.06 -0.68 2.71 16 32 H 0.06 2.44 8.02 -2.39 -0.02 2.42 16 33 H 0.04 1.54 8.14 -2.39 -0.02 1.52 16 Total: -1.00 -70.99 267.95 -2.77 -73.75 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -0.21 Total: 10.72 kcal Atomic # 6 Polarization: -15.66 SS G_CDS: 2.69 Total: -12.98 kcal Atomic # 7 Polarization: -82.84 SS G_CDS: -3.80 Total: -86.63 kcal Atomic # 8 Polarization: -29.02 SS G_CDS: -3.47 Total: -32.49 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -70.99 -2.77 -73.75 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307543979.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.081 kcal (2) G-P(sol) polarization free energy of solvation -70.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -128.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds