Wall clock time and date at job start Mon Mar 30 2020 02:29:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.37095 * 120.00003 * 2 1 4 4 H 1.08002 * 119.99935 * 153.33845 * 3 2 1 5 5 C 1.38951 * 120.00311 * 333.33637 * 3 2 1 6 6 N 1.31413 * 119.99598 * 349.58410 * 5 3 2 7 7 Si 1.86799 * 120.00211 * 169.57896 * 5 3 2 8 8 H 1.48495 * 109.46988 * 60.00498 * 7 5 3 9 9 H 1.48496 * 109.46886 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.46883 * 300.00253 * 7 5 3 11 11 C 1.34777 * 119.99990 * 180.02562 * 2 1 3 12 12 O 1.21294 * 119.99797 * 174.08416 * 11 2 1 13 13 C 1.50700 * 120.00227 * 354.36172 * 11 2 1 14 14 H 1.09003 * 110.42860 * 326.32085 * 13 11 2 15 15 C 1.54262 * 110.48652 * 203.78088 * 13 11 2 16 16 C 1.53884 * 106.59425 * 217.70595 * 15 13 11 17 17 C 1.54261 * 106.59881 * 0.02562 * 16 15 13 18 18 H 1.08998 * 110.48706 * 142.42105 * 17 16 15 19 19 F 1.39899 * 110.48567 * 264.92760 * 17 16 15 20 20 C 1.54887 * 110.48656 * 89.00042 * 13 11 2 21 21 H 1.09004 * 109.46748 * 215.45662 * 1 2 3 22 22 H 1.09002 * 109.46877 * 335.44679 * 1 2 3 23 23 H 1.08997 * 109.47412 * 95.44855 * 1 2 3 24 24 H 0.96997 * 119.99814 * 180.02562 * 6 5 3 25 25 H 1.08995 * 110.03399 * 336.99105 * 15 13 11 26 26 H 1.08998 * 110.03533 * 98.37660 * 15 13 11 27 27 H 1.09009 * 110.02947 * 119.28451 * 16 15 13 28 28 H 1.08994 * 110.03336 * 240.70988 * 16 15 13 29 29 H 1.09000 * 110.75641 * 274.93851 * 20 13 11 30 30 H 1.09001 * 110.75935 * 38.30839 * 20 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1505 1.1873 0.0000 4 1 3.1444 1.2370 0.4197 5 6 1.5666 2.3267 -0.5400 6 7 0.4526 2.2299 -1.2304 7 14 2.3650 3.9960 -0.2845 8 1 3.7322 3.9846 -0.8639 9 1 1.5514 5.0416 -0.9551 10 1 2.4458 4.2887 1.1692 11 6 2.1389 -1.1672 -0.0005 12 8 3.3470 -1.1699 -0.1088 13 6 1.3909 -2.4692 0.1271 14 1 0.5159 -2.3444 0.7650 15 6 2.3150 -3.5700 0.6875 16 6 1.9429 -4.8712 -0.0451 17 6 0.8062 -4.5153 -1.0254 18 1 0.9192 -5.0688 -1.9576 19 9 -0.4398 -4.7811 -0.4476 20 6 0.9765 -2.9955 -1.2694 21 1 -0.3633 -0.8371 0.5962 22 1 -0.3633 0.9348 0.4270 23 1 -0.3634 -0.0976 -1.0230 24 1 0.0452 3.0252 -1.6076 25 1 3.3573 -3.3172 0.4933 26 1 2.1522 -3.6845 1.7591 27 1 2.8048 -5.2497 -0.5948 28 1 1.5990 -5.6176 0.6709 29 1 0.0352 -2.5473 -1.5875 30 1 1.7618 -2.8078 -2.0017 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307571696.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:18 Heat of formation + Delta-G solvation = -92.090338 kcal Electronic energy + Delta-G solvation = -14895.621463 eV Core-core repulsion = 12218.991660 eV Total energy + Delta-G solvation = -2676.629803 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -47.39238 -38.91476 -36.16533 -34.52364 -31.61729 -28.86159 -28.11436 -26.15608 -24.42819 -21.30162 -20.38421 -18.39026 -16.99958 -16.63639 -15.69370 -15.55814 -14.66021 -14.52320 -14.07767 -13.91381 -13.34849 -12.94236 -12.35263 -11.79984 -11.67672 -11.39919 -11.34431 -11.00094 -10.81598 -10.70666 -10.56057 -10.47725 -10.41219 -10.32210 -9.91900 -8.97651 -8.31718 -7.61084 -6.29647 -3.88501 3.19796 3.25109 3.29023 3.86116 4.14733 4.59648 4.66448 4.81956 4.92855 5.16569 5.19716 5.62285 5.66052 5.73209 5.79581 5.86541 5.96052 6.10669 6.24172 6.41135 6.52104 6.55228 6.74689 6.89302 7.23047 7.57139 8.18093 8.52145 9.21533 9.45127 10.02581 10.75177 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.056791 B = 0.008115 C = 0.007443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 492.921732 B = 3449.769531 C = 3761.237716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.111 3.889 2 N -0.445 5.445 3 C -0.307 4.307 4 H 0.095 0.905 5 C 0.031 3.969 6 N -0.883 5.883 7 Si 0.926 3.074 8 H -0.273 1.273 9 H -0.284 1.284 10 H -0.274 1.274 11 C 0.455 3.545 12 O -0.589 6.589 13 C -0.107 4.107 14 H 0.087 0.913 15 C -0.113 4.113 16 C -0.146 4.146 17 C 0.083 3.917 18 H 0.086 0.914 19 F -0.213 7.213 20 C -0.130 4.130 21 H 0.027 0.973 22 H 0.073 0.927 23 H 0.050 0.950 24 H 0.268 0.732 25 H 0.088 0.912 26 H 0.062 0.938 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.081 0.919 30 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.219 -9.392 0.961 9.698 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.033 4.033 2 N -0.164 5.164 3 C -0.435 4.435 4 H 0.112 0.888 5 C -0.172 4.172 6 N -0.522 5.522 7 Si 0.753 3.247 8 H -0.198 1.198 9 H -0.209 1.209 10 H -0.199 1.199 11 C 0.243 3.757 12 O -0.474 6.474 13 C -0.129 4.129 14 H 0.105 0.895 15 C -0.151 4.151 16 C -0.184 4.184 17 C 0.047 3.953 18 H 0.104 0.896 19 F -0.194 7.194 20 C -0.168 4.168 21 H 0.046 0.954 22 H 0.092 0.908 23 H 0.069 0.931 24 H 0.078 0.922 25 H 0.107 0.893 26 H 0.081 0.919 27 H 0.097 0.903 28 H 0.092 0.908 29 H 0.100 0.900 30 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -1.806 -9.223 0.829 9.434 hybrid contribution 0.010 0.930 0.034 0.930 sum -1.796 -8.293 0.863 8.529 Atomic orbital electron populations 1.21510 0.81385 1.00030 1.00354 1.43556 1.05425 1.04700 1.62674 1.19576 1.01862 0.84703 1.37321 0.88776 1.25377 0.96620 1.00192 0.95043 1.69966 1.19354 1.30030 1.32861 0.85999 0.79122 0.80992 0.78574 1.19803 1.20937 1.19931 1.19893 0.87971 0.84549 0.83308 1.90481 1.14551 1.86761 1.55572 1.22017 0.99043 0.94702 0.97089 0.89515 1.22074 1.01776 0.92175 0.99040 1.22752 0.97992 0.98959 0.98653 1.22399 0.79467 0.97409 0.96033 0.89627 1.92786 1.44768 1.95113 1.86766 1.22963 1.03153 0.93044 0.97663 0.95433 0.90811 0.93120 0.92224 0.89302 0.91934 0.90285 0.90835 0.89993 0.89327 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.54 8.52 59.85 0.51 3.05 16 2 N -0.45 -11.64 3.01 -122.19 -0.37 -12.00 16 3 C -0.31 -8.68 9.17 -14.93 -0.14 -8.82 16 4 H 0.09 2.77 7.55 -52.49 -0.40 2.37 16 5 C 0.03 0.83 5.08 -17.47 -0.09 0.74 16 6 N -0.88 -23.89 10.86 55.50 0.60 -23.29 16 7 Si 0.93 20.99 29.57 -169.99 -5.03 15.96 16 8 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 9 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 10 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 11 C 0.45 11.21 6.78 -10.99 -0.07 11.13 16 12 O -0.59 -16.41 15.38 5.55 0.09 -16.32 16 13 C -0.11 -2.02 2.50 -90.12 -0.23 -2.25 16 14 H 0.09 1.58 6.25 -51.93 -0.32 1.25 16 15 C -0.11 -1.86 6.32 -25.61 -0.16 -2.02 16 16 C -0.15 -1.92 6.61 -25.61 -0.17 -2.09 16 17 C 0.08 1.14 4.66 -25.09 -0.12 1.03 16 18 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 19 F -0.21 -3.26 17.17 2.25 0.04 -3.22 16 20 C -0.13 -2.16 6.11 -24.75 -0.15 -2.31 16 21 H 0.03 0.53 6.03 -51.93 -0.31 0.22 16 22 H 0.07 1.77 6.81 -51.93 -0.35 1.42 16 23 H 0.05 1.18 7.85 -51.93 -0.41 0.77 16 24 H 0.27 6.87 8.31 -40.82 -0.34 6.53 16 25 H 0.09 1.65 6.79 -51.93 -0.35 1.30 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.08 0.92 8.14 -51.92 -0.42 0.50 16 28 H 0.07 0.87 8.12 -51.93 -0.42 0.45 16 29 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.09 1.53 8.05 -51.93 -0.42 1.11 16 LS Contribution 251.35 15.07 3.79 3.79 Total: -1.00 -30.79 251.35 -5.31 -36.10 By element: Atomic # 1 Polarization: 4.35 SS G_CDS: -3.81 Total: 0.54 kcal Atomic # 6 Polarization: -0.93 SS G_CDS: -0.61 Total: -1.55 kcal Atomic # 7 Polarization: -35.53 SS G_CDS: 0.24 Total: -35.29 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: 0.09 Total: -16.32 kcal Atomic # 9 Polarization: -3.26 SS G_CDS: 0.04 Total: -3.22 kcal Atomic # 14 Polarization: 20.99 SS G_CDS: -5.03 Total: 15.96 kcal Total LS contribution 3.79 Total: 3.79 kcal Total: -30.79 -5.31 -36.10 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307571696.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.992 kcal (2) G-P(sol) polarization free energy of solvation -30.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.099 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds