Wall clock time and date at job start Mon Mar 30 2020 02:29:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 119.99334 * 2 1 4 4 H 1.07999 * 119.99643 * 158.71960 * 3 2 1 5 5 C 1.38948 * 120.00131 * 338.71295 * 3 2 1 6 6 N 1.31405 * 119.99940 * 346.10278 * 5 3 2 7 7 Si 1.86804 * 119.99670 * 166.10510 * 5 3 2 8 8 H 1.48502 * 109.46749 * 94.97223 * 7 5 3 9 9 H 1.48496 * 109.46848 * 214.97060 * 7 5 3 10 10 H 1.48500 * 109.47214 * 334.97392 * 7 5 3 11 11 C 1.34773 * 120.00224 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99775 * 185.32005 * 11 2 1 13 13 C 1.50693 * 119.99934 * 5.32091 * 11 2 1 14 14 H 1.08998 * 110.54301 * 325.37535 * 13 11 2 15 15 C 1.54885 * 110.48825 * 87.99226 * 13 11 2 16 16 C 1.54887 * 102.75317 * 156.61724 * 15 13 11 17 17 C 1.54264 * 104.19539 * 322.05884 * 16 15 13 18 18 H 1.09004 * 110.07326 * 142.91675 * 17 16 15 19 19 F 1.39898 * 110.03241 * 264.32423 * 17 16 15 20 20 C 1.53872 * 106.59665 * 23.60618 * 17 16 15 21 21 H 1.09006 * 109.47185 * 205.68288 * 1 2 3 22 22 H 1.08994 * 109.47544 * 325.68342 * 1 2 3 23 23 H 1.08999 * 109.47093 * 85.68591 * 1 2 3 24 24 H 0.97005 * 119.99981 * 179.97438 * 6 5 3 25 25 H 1.09006 * 110.75616 * 274.93584 * 15 13 11 26 26 H 1.09008 * 110.75714 * 38.30158 * 15 13 11 27 27 H 1.09004 * 110.48730 * 203.37760 * 16 15 13 28 28 H 1.09001 * 110.59594 * 80.78899 * 16 15 13 29 29 H 1.09004 * 110.03215 * 240.71481 * 20 17 16 30 30 H 1.09002 * 110.03117 * 119.28878 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1751 1.2194 0.3395 5 6 1.5266 2.3497 -0.4369 6 7 0.3936 2.2783 -1.0986 7 14 2.2988 4.0135 -0.0834 8 1 3.1174 4.4366 -1.2479 9 1 1.2288 5.0142 0.1593 10 1 3.1640 3.9122 1.1193 11 6 2.1389 -1.1671 0.0005 12 8 3.3479 -1.1693 0.0979 13 6 1.3903 -2.4694 -0.1199 14 1 0.4279 -2.4058 0.3878 15 6 1.1935 -2.8459 -1.6094 16 6 1.0001 -4.3815 -1.5513 17 6 1.9807 -4.8451 -0.4543 18 1 1.5401 -5.6590 0.1217 19 9 3.1836 -5.2641 -1.0327 20 6 2.2288 -3.6294 0.4557 21 1 -0.3634 -0.9262 0.4454 22 1 -0.3634 0.8487 0.5793 23 1 -0.3633 0.0773 -1.0247 24 1 -0.0421 3.0897 -1.4033 25 1 0.3069 -2.3600 -2.0168 26 1 2.0781 -2.5898 -2.1927 27 1 1.2567 -4.8349 -2.5087 28 1 -0.0251 -4.6287 -1.2757 29 1 3.2865 -3.3659 0.4467 30 1 1.9079 -3.8529 1.4732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307571697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:20 Heat of formation + Delta-G solvation = -90.433619 kcal Electronic energy + Delta-G solvation = -14860.559115 eV Core-core repulsion = 12184.001153 eV Total energy + Delta-G solvation = -2676.557962 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -47.33159 -38.94511 -36.20606 -34.56626 -31.59910 -28.77416 -28.15628 -26.17598 -24.40666 -21.38207 -20.36807 -18.32484 -16.99428 -16.72639 -15.97796 -15.39989 -14.63550 -14.42545 -14.09817 -13.73013 -13.25047 -12.88966 -12.60255 -11.95123 -11.53544 -11.42841 -11.18766 -11.13772 -10.90463 -10.67768 -10.53145 -10.41197 -10.36718 -10.28581 -9.98056 -9.02471 -8.32701 -7.66142 -6.30029 -3.84937 3.16650 3.25726 3.32298 3.85727 4.14114 4.62700 4.65860 4.80359 5.02089 5.15076 5.16756 5.57901 5.61813 5.70149 5.79720 5.87664 5.96235 6.02630 6.24681 6.41251 6.45101 6.56722 6.74775 6.89672 7.22446 7.58622 8.15458 8.51104 9.21160 9.45830 10.01574 10.73424 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.059085 B = 0.007843 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.775815 B = 3569.057240 C = 3802.254890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.112 3.888 2 N -0.446 5.446 3 C -0.307 4.307 4 H 0.099 0.901 5 C 0.030 3.970 6 N -0.883 5.883 7 Si 0.925 3.075 8 H -0.278 1.278 9 H -0.283 1.283 10 H -0.269 1.269 11 C 0.453 3.547 12 O -0.589 6.589 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.106 4.106 16 C -0.148 4.148 17 C 0.086 3.914 18 H 0.081 0.919 19 F -0.215 7.215 20 C -0.141 4.141 21 H 0.029 0.971 22 H 0.064 0.936 23 H 0.060 0.940 24 H 0.266 0.734 25 H 0.075 0.925 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.100 0.900 30 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.116 -9.358 0.876 10.260 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.032 4.032 2 N -0.164 5.164 3 C -0.435 4.435 4 H 0.117 0.883 5 C -0.173 4.173 6 N -0.523 5.523 7 Si 0.751 3.249 8 H -0.204 1.204 9 H -0.208 1.208 10 H -0.194 1.194 11 C 0.241 3.759 12 O -0.474 6.474 13 C -0.128 4.128 14 H 0.106 0.894 15 C -0.144 4.144 16 C -0.186 4.186 17 C 0.050 3.950 18 H 0.099 0.901 19 F -0.196 7.196 20 C -0.179 4.179 21 H 0.047 0.953 22 H 0.083 0.917 23 H 0.079 0.921 24 H 0.077 0.923 25 H 0.094 0.906 26 H 0.093 0.907 27 H 0.096 0.904 28 H 0.099 0.901 29 H 0.119 0.881 30 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.646 -9.191 0.838 9.923 hybrid contribution 0.088 0.931 0.042 0.937 sum -3.558 -8.259 0.881 9.036 Atomic orbital electron populations 1.21544 0.81228 0.98367 1.02083 1.43576 1.05457 1.04797 1.62605 1.19675 0.98909 0.83727 1.41205 0.88340 1.25310 0.96552 0.99982 0.95470 1.70008 1.18021 1.29045 1.35178 0.85941 0.78602 0.81284 0.79044 1.20427 1.20822 1.19404 1.19828 0.87770 0.84724 0.83562 1.90493 1.14392 1.86861 1.55649 1.22026 0.99341 0.94238 0.97199 0.89415 1.22370 1.02724 0.93839 0.95432 1.22980 0.99320 0.97332 0.98930 1.22219 0.81341 0.97140 0.94287 0.90133 1.92806 1.48709 1.91654 1.86409 1.22732 1.04218 0.92806 0.98105 0.95266 0.91740 0.92117 0.92342 0.90627 0.90715 0.90447 0.90085 0.88146 0.90926 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 2.48 8.53 59.85 0.51 2.99 16 2 N -0.45 -11.55 3.02 -122.20 -0.37 -11.92 16 3 C -0.31 -8.70 9.33 -14.93 -0.14 -8.84 16 4 H 0.10 2.93 7.36 -52.49 -0.39 2.55 16 5 C 0.03 0.79 5.08 -17.47 -0.09 0.70 16 6 N -0.88 -23.58 10.66 55.50 0.59 -22.99 16 7 Si 0.92 20.95 29.58 -169.99 -5.03 15.92 16 8 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 11 C 0.45 11.17 6.79 -10.99 -0.07 11.09 16 12 O -0.59 -16.67 15.24 5.54 0.08 -16.58 16 13 C -0.11 -1.96 2.61 -90.12 -0.24 -2.19 16 14 H 0.09 1.43 5.99 -51.93 -0.31 1.12 16 15 C -0.11 -1.75 6.32 -24.74 -0.16 -1.91 16 16 C -0.15 -1.92 6.62 -25.07 -0.17 -2.09 16 17 C 0.09 1.22 4.68 -25.62 -0.12 1.10 16 18 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 19 F -0.21 -3.59 17.05 2.25 0.04 -3.55 16 20 C -0.14 -2.34 6.16 -25.61 -0.16 -2.50 16 21 H 0.03 0.53 5.78 -51.93 -0.30 0.23 16 22 H 0.06 1.50 7.20 -51.93 -0.37 1.13 16 23 H 0.06 1.39 7.43 -51.93 -0.39 1.01 16 24 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16 25 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 26 H 0.07 1.42 8.05 -51.92 -0.42 1.00 16 27 H 0.08 0.95 8.11 -51.93 -0.42 0.53 16 28 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.10 2.01 6.65 -51.93 -0.35 1.67 16 30 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 250.44 15.07 3.77 3.77 Total: -1.00 -31.23 250.44 -5.30 -36.53 By element: Atomic # 1 Polarization: 4.24 SS G_CDS: -3.77 Total: 0.47 kcal Atomic # 6 Polarization: -1.03 SS G_CDS: -0.63 Total: -1.66 kcal Atomic # 7 Polarization: -35.12 SS G_CDS: 0.22 Total: -34.90 kcal Atomic # 8 Polarization: -16.67 SS G_CDS: 0.08 Total: -16.58 kcal Atomic # 9 Polarization: -3.59 SS G_CDS: 0.04 Total: -3.55 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -5.03 Total: 15.92 kcal Total LS contribution 3.77 Total: 3.77 kcal Total: -31.23 -5.30 -36.53 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307571697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.906 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.131 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.528 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.434 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds