Wall clock time and date at job start Mon Mar 30 2020 02:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.37104 * 119.99334 * 2 1 4 4 H 1.07999 * 119.99643 * 158.71960 * 3 2 1 5 5 C 1.38948 * 120.00131 * 338.71295 * 3 2 1 6 6 N 1.31405 * 119.99940 * 346.10278 * 5 3 2 7 7 Si 1.86804 * 119.99670 * 166.10510 * 5 3 2 8 8 H 1.48502 * 109.46749 * 94.97223 * 7 5 3 9 9 H 1.48496 * 109.46848 * 214.97060 * 7 5 3 10 10 H 1.48500 * 109.47214 * 334.97392 * 7 5 3 11 11 C 1.34773 * 120.00224 * 179.97438 * 2 1 3 12 12 O 1.21296 * 119.99775 * 185.32005 * 11 2 1 13 13 C 1.50693 * 119.99934 * 5.32091 * 11 2 1 14 14 H 1.08998 * 110.54301 * 325.37535 * 13 11 2 15 15 C 1.54885 * 110.48825 * 87.99226 * 13 11 2 16 16 C 1.54887 * 102.75317 * 156.61724 * 15 13 11 17 17 C 1.54264 * 104.19539 * 322.05884 * 16 15 13 18 18 H 1.09004 * 110.07326 * 142.91675 * 17 16 15 19 19 F 1.39898 * 110.03241 * 264.32423 * 17 16 15 20 20 C 1.53872 * 106.59665 * 23.60618 * 17 16 15 21 21 H 1.09006 * 109.47185 * 205.68288 * 1 2 3 22 22 H 1.08994 * 109.47544 * 325.68342 * 1 2 3 23 23 H 1.08999 * 109.47093 * 85.68591 * 1 2 3 24 24 H 0.97005 * 119.99981 * 179.97438 * 6 5 3 25 25 H 1.09006 * 110.75616 * 274.93584 * 15 13 11 26 26 H 1.09008 * 110.75714 * 38.30158 * 15 13 11 27 27 H 1.09004 * 110.48730 * 203.37760 * 16 15 13 28 28 H 1.09001 * 110.59594 * 80.78899 * 16 15 13 29 29 H 1.09004 * 110.03215 * 240.71481 * 20 17 16 30 30 H 1.09002 * 110.03117 * 119.28878 * 20 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1503 1.1874 0.0000 4 1 3.1751 1.2194 0.3395 5 6 1.5266 2.3497 -0.4369 6 7 0.3936 2.2783 -1.0986 7 14 2.2988 4.0135 -0.0834 8 1 3.1174 4.4366 -1.2479 9 1 1.2288 5.0142 0.1593 10 1 3.1640 3.9122 1.1193 11 6 2.1389 -1.1671 0.0005 12 8 3.3479 -1.1693 0.0979 13 6 1.3903 -2.4694 -0.1199 14 1 0.4279 -2.4058 0.3878 15 6 1.1935 -2.8459 -1.6094 16 6 1.0001 -4.3815 -1.5513 17 6 1.9807 -4.8451 -0.4543 18 1 1.5401 -5.6590 0.1217 19 9 3.1836 -5.2641 -1.0327 20 6 2.2288 -3.6294 0.4557 21 1 -0.3634 -0.9262 0.4454 22 1 -0.3634 0.8487 0.5793 23 1 -0.3633 0.0773 -1.0247 24 1 -0.0421 3.0897 -1.4033 25 1 0.3069 -2.3600 -2.0168 26 1 2.0781 -2.5898 -2.1927 27 1 1.2567 -4.8349 -2.5087 28 1 -0.0251 -4.6287 -1.2757 29 1 3.2865 -3.3659 0.4467 30 1 1.9079 -3.8529 1.4732 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307571697.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:19 Heat of formation + Delta-G solvation = -110.479831 kcal Electronic energy + Delta-G solvation = -14861.428384 eV Core-core repulsion = 12184.001153 eV Total energy + Delta-G solvation = -2677.427231 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -48.53208 -40.73422 -37.70057 -36.56379 -33.64554 -30.13480 -29.49270 -28.03179 -26.32137 -22.96290 -21.52407 -20.02917 -18.91859 -18.39082 -17.34501 -16.92902 -16.29270 -16.01506 -15.74323 -15.53146 -14.61110 -14.47416 -14.06275 -13.80793 -13.35237 -13.13999 -12.76555 -12.68668 -12.52239 -12.28186 -12.14741 -12.03928 -11.75702 -11.49339 -11.43104 -11.04493 -10.30332 -9.69715 -8.34611 -5.98806 1.34329 1.38822 1.52002 1.99228 2.26643 3.01885 3.05559 3.47613 3.53328 3.82003 3.97028 4.25225 4.32197 4.36218 4.47300 4.50477 4.68878 4.80248 4.90339 5.02126 5.06029 5.21420 5.32099 5.40006 5.42961 5.44225 6.08384 6.48369 7.16211 7.47806 8.03866 8.66617 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.059085 B = 0.007843 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 473.775815 B = 3569.057240 C = 3802.254890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.120 3.880 2 N -0.462 5.462 3 C -0.350 4.350 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.893 5.893 7 Si 0.987 3.013 8 H -0.276 1.276 9 H -0.263 1.263 10 H -0.274 1.274 11 C 0.440 3.560 12 O -0.640 6.640 13 C -0.100 4.100 14 H 0.120 0.880 15 C -0.108 4.108 16 C -0.134 4.134 17 C 0.084 3.916 18 H 0.128 0.872 19 F -0.234 7.234 20 C -0.142 4.142 21 H 0.075 0.925 22 H 0.048 0.952 23 H 0.051 0.949 24 H 0.274 0.726 25 H 0.086 0.914 26 H 0.036 0.964 27 H 0.085 0.915 28 H 0.122 0.878 29 H 0.056 0.944 30 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.218 -10.414 1.065 12.176 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 N -0.180 5.180 3 C -0.478 4.478 4 H 0.085 0.915 5 C -0.203 4.203 6 N -0.531 5.531 7 Si 0.810 3.190 8 H -0.202 1.202 9 H -0.188 1.188 10 H -0.198 1.198 11 C 0.230 3.770 12 O -0.528 6.528 13 C -0.121 4.121 14 H 0.138 0.862 15 C -0.147 4.147 16 C -0.171 4.171 17 C 0.048 3.952 18 H 0.146 0.854 19 F -0.215 7.215 20 C -0.180 4.180 21 H 0.093 0.907 22 H 0.067 0.933 23 H 0.069 0.931 24 H 0.084 0.916 25 H 0.104 0.896 26 H 0.055 0.945 27 H 0.104 0.896 28 H 0.141 0.859 29 H 0.075 0.925 30 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -5.789 -10.255 1.018 11.820 hybrid contribution 0.760 1.279 -0.031 1.488 sum -5.029 -8.977 0.987 10.337 Atomic orbital electron populations 1.21526 0.79087 1.00046 1.01596 1.43865 1.06907 1.04608 1.62629 1.19598 0.98548 0.85954 1.43733 0.91521 1.26035 0.97010 1.02655 0.94561 1.70064 1.18335 1.30284 1.34444 0.85031 0.78172 0.77251 0.78526 1.20227 1.18770 1.19849 1.20995 0.87693 0.86531 0.81794 1.90452 1.16971 1.87951 1.57457 1.22077 0.99940 0.90989 0.99106 0.86227 1.22384 1.01472 0.97307 0.93488 1.22991 1.01274 0.93627 0.99220 1.22510 0.80829 0.97310 0.94550 0.85448 1.92775 1.50277 1.91742 1.86754 1.22759 1.01243 0.93480 1.00552 0.90719 0.93333 0.93079 0.91632 0.89556 0.94516 0.89589 0.85948 0.92508 0.88111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 5.23 8.53 127.77 1.09 6.31 16 2 N -0.46 -24.38 3.02 -658.91 -1.99 -26.37 16 3 C -0.35 -20.55 9.33 84.04 0.78 -19.77 16 4 H 0.07 4.23 7.36 -2.91 -0.02 4.21 16 5 C 0.00 -0.03 5.08 84.93 0.43 0.40 16 6 N -0.89 -47.41 10.66 21.66 0.23 -47.18 16 7 Si 0.99 43.19 29.58 68.60 2.03 45.22 16 8 H -0.28 -11.99 7.11 99.48 0.71 -11.29 16 9 H -0.26 -10.66 7.11 99.48 0.71 -9.96 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 11 C 0.44 22.20 6.79 87.66 0.60 22.79 16 12 O -0.64 -38.24 15.24 -3.08 -0.05 -38.29 16 13 C -0.10 -3.53 2.61 -10.47 -0.03 -3.56 16 14 H 0.12 3.43 5.99 -2.39 -0.01 3.42 16 15 C -0.11 -3.43 6.32 31.88 0.20 -3.23 16 16 C -0.13 -2.95 6.62 31.67 0.21 -2.74 16 17 C 0.08 2.09 4.68 31.32 0.15 2.23 16 18 H 0.13 2.09 8.14 -2.39 -0.02 2.07 16 19 F -0.23 -7.52 17.05 44.97 0.77 -6.75 16 20 C -0.14 -4.52 6.16 31.32 0.19 -4.33 16 21 H 0.07 2.50 5.78 -2.38 -0.01 2.49 16 22 H 0.05 2.23 7.20 -2.39 -0.02 2.21 16 23 H 0.05 2.30 7.43 -2.39 -0.02 2.28 16 24 H 0.27 13.55 8.31 -92.70 -0.77 12.78 16 25 H 0.09 2.52 8.14 -2.38 -0.02 2.50 16 26 H 0.04 1.42 8.05 -2.38 -0.02 1.40 16 27 H 0.09 1.81 8.11 -2.38 -0.02 1.79 16 28 H 0.12 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.06 2.34 6.65 -2.38 -0.02 2.32 16 30 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -71.84 250.44 5.75 -66.09 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: 1.13 Total: 9.16 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: 3.62 Total: -1.89 kcal Atomic # 7 Polarization: -71.79 SS G_CDS: -1.76 Total: -73.55 kcal Atomic # 8 Polarization: -38.24 SS G_CDS: -0.05 Total: -38.29 kcal Atomic # 9 Polarization: -7.52 SS G_CDS: 0.77 Total: -6.75 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Total: -71.84 5.75 -66.09 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307571697.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.392 kcal (2) G-P(sol) polarization free energy of solvation -71.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds