Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81395 * 103.00077 * 2 1 4 4 H 1.09011 * 110.27006 * 307.08637 * 3 2 1 5 5 C 1.54589 * 110.39766 * 69.23213 * 3 2 1 6 6 C 1.54936 * 102.92607 * 140.91766 * 5 3 2 7 7 N 1.48541 * 103.22271 * 322.58930 * 6 5 3 8 8 C 1.46901 * 110.99838 * 159.72038 * 7 6 5 9 9 H 1.09002 * 109.47190 * 297.60628 * 8 7 6 10 10 C 1.52997 * 109.47051 * 177.60079 * 8 7 6 11 11 C 1.50699 * 109.47169 * 57.60077 * 8 7 6 12 12 H 1.08001 * 120.00191 * 28.09276 * 11 8 7 13 13 C 1.37879 * 120.00161 * 208.09425 * 11 8 7 14 14 N 1.31521 * 119.99797 * 353.76144 * 13 11 8 15 15 Si 1.86795 * 120.00296 * 173.49156 * 13 11 8 16 16 H 1.48505 * 109.47284 * 59.99670 * 15 13 11 17 17 H 1.48495 * 109.47432 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47001 * 299.99814 * 15 13 11 19 19 C 1.47894 * 105.82004 * 39.20545 * 7 6 5 20 20 H 1.08999 * 109.47334 * 300.00212 * 1 2 3 21 21 H 1.08997 * 109.47070 * 60.00300 * 1 2 3 22 22 H 1.09005 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.09007 * 110.72693 * 259.28006 * 5 3 2 24 24 H 1.09003 * 110.72344 * 22.38086 * 5 3 2 25 25 H 1.08997 * 110.67001 * 204.15614 * 6 5 3 26 26 H 1.08998 * 110.67049 * 81.02031 * 6 5 3 27 27 H 1.09006 * 109.47070 * 186.51391 * 10 8 7 28 28 H 1.08994 * 109.46973 * 306.51721 * 10 8 7 29 29 H 1.08999 * 109.46803 * 66.51816 * 10 8 7 30 30 H 0.97004 * 119.99821 * 354.56597 * 14 13 11 31 31 H 1.09006 * 109.91652 * 94.02151 * 19 7 6 32 32 H 1.08998 * 109.91874 * 215.11574 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7062 2.2742 -0.8158 5 6 1.8427 2.4080 1.3548 6 6 3.0133 3.3893 1.6141 7 7 4.1962 2.6493 1.1046 8 6 5.3077 3.5663 0.8188 9 1 5.0114 4.2633 0.0350 10 6 6.5245 2.7635 0.3542 11 6 5.6592 4.3340 2.0670 12 1 5.4788 3.8975 3.0383 13 6 6.2111 5.5937 1.9692 14 7 6.5443 6.0760 0.7918 15 14 6.4785 6.6185 3.5079 16 1 7.3919 5.8973 4.4304 17 1 7.0813 7.9234 3.1351 18 1 5.1754 6.8491 4.1816 19 6 3.7441 1.9646 -0.1259 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.8982 2.9465 1.2759 24 1 1.7894 1.6515 2.1377 25 1 3.1163 3.5922 2.6801 26 1 2.8697 4.3153 1.0573 27 1 7.3819 3.4290 0.2533 28 1 6.7500 1.9888 1.0871 29 1 6.3084 2.3008 -0.6087 30 1 6.4758 5.5173 0.0018 31 1 3.9680 2.5804 -0.9971 32 1 4.2404 0.9984 -0.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307589953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -6.022440 kcal Electronic energy + Delta-G solvation = -12922.401173 eV Core-core repulsion = 10815.716731 eV Total energy + Delta-G solvation = -2106.684442 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.32655 -34.11666 -31.27096 -29.00976 -28.62713 -27.59193 -24.67624 -21.82003 -20.61534 -19.66427 -16.96210 -16.39432 -15.24265 -15.02073 -13.83692 -13.73680 -13.61404 -13.41048 -12.92871 -12.68816 -12.38768 -11.71656 -11.51624 -11.23458 -10.98212 -10.84661 -10.65694 -10.51307 -10.23512 -10.17880 -10.07295 -9.67421 -8.59307 -8.33439 -7.57544 -7.39710 -6.37601 -4.09022 1.79365 2.66867 3.43495 3.44539 3.63561 4.50175 4.76199 4.83081 5.08326 5.09749 5.14819 5.34605 5.43002 5.63168 5.74707 5.87280 6.01862 6.13476 6.26830 6.48018 6.54992 6.62453 6.73379 6.85564 7.01403 7.35365 7.74653 7.98829 8.31054 8.57939 8.85025 9.63245 10.99494 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055770 B = 0.007447 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.939103 B = 3759.208657 C = 4050.603287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 S -0.254 6.254 3 C -0.060 4.060 4 H 0.083 0.917 5 C -0.122 4.122 6 C 0.063 3.937 7 N -0.504 5.504 8 C 0.185 3.815 9 H 0.005 0.995 10 C -0.129 4.129 11 C -0.583 4.583 12 H 0.056 0.944 13 C 0.020 3.980 14 N -0.913 5.913 15 Si 1.067 2.933 16 H -0.287 1.287 17 H -0.283 1.283 18 H -0.288 1.288 19 C 0.059 3.941 20 H 0.075 0.925 21 H 0.071 0.929 22 H 0.096 0.904 23 H 0.063 0.937 24 H 0.082 0.918 25 H 0.084 0.916 26 H 0.038 0.962 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.015 0.985 30 H 0.269 0.731 31 H 0.044 0.956 32 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.452 -7.677 -1.377 13.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.293 4.293 2 S -0.028 6.028 3 C -0.189 4.189 4 H 0.101 0.899 5 C -0.162 4.162 6 C -0.066 4.066 7 N -0.230 5.230 8 C 0.079 3.921 9 H 0.023 0.977 10 C -0.188 4.188 11 C -0.621 4.621 12 H 0.075 0.925 13 C -0.185 4.185 14 N -0.549 5.549 15 Si 0.895 3.105 16 H -0.214 1.214 17 H -0.209 1.209 18 H -0.215 1.215 19 C -0.071 4.071 20 H 0.094 0.906 21 H 0.090 0.910 22 H 0.115 0.885 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.057 0.943 27 H 0.069 0.931 28 H 0.065 0.935 29 H 0.034 0.966 30 H 0.080 0.920 31 H 0.063 0.937 32 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -9.068 -7.442 -0.492 11.741 hybrid contribution -1.613 0.080 -1.285 2.064 sum -10.681 -7.362 -1.777 13.093 Atomic orbital electron populations 1.23341 0.95441 1.05896 1.04644 1.86880 1.06047 1.11999 1.97839 1.24092 1.00998 0.92733 1.01092 0.89860 1.22980 0.98618 0.99424 0.95220 1.22860 0.88088 0.94023 1.01644 1.64923 1.06094 1.28737 1.23225 1.19655 0.87005 0.88863 0.96599 0.97700 1.21874 0.99894 0.99668 0.97331 1.21835 1.44769 1.03001 0.92526 0.92539 1.25827 0.93644 0.96175 1.02822 1.70798 1.45010 1.39860 0.99235 0.83575 0.76531 0.76098 0.74290 1.21350 1.20890 1.21459 1.22614 0.90029 1.00082 0.94345 0.90613 0.90959 0.88545 0.91789 0.89907 0.89799 0.94343 0.93094 0.93466 0.96573 0.92029 0.93747 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.69 101.05 1.08 -0.21 16 2 S -0.25 -3.67 21.38 -107.50 -2.30 -5.97 16 3 C -0.06 -0.94 3.49 -25.38 -0.09 -1.03 16 4 H 0.08 1.21 8.14 -51.92 -0.42 0.79 16 5 C -0.12 -1.93 6.56 -24.87 -0.16 -2.09 16 6 C 0.06 1.26 5.72 -1.89 -0.01 1.25 16 7 N -0.50 -11.08 5.10 -223.89 -1.14 -12.22 16 8 C 0.19 4.66 1.40 -68.87 -0.10 4.57 16 9 H 0.01 0.15 6.79 -51.93 -0.35 -0.21 16 10 C -0.13 -3.05 8.92 37.16 0.33 -2.72 16 11 C -0.58 -16.07 7.47 -34.44 -0.26 -16.33 16 12 H 0.06 1.59 7.82 -52.49 -0.41 1.18 16 13 C 0.02 0.55 5.45 -17.82 -0.10 0.45 16 14 N -0.91 -27.15 13.56 55.43 0.75 -26.40 16 15 Si 1.07 24.91 29.91 -169.99 -5.08 19.83 16 16 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 17 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 18 H -0.29 -6.42 7.11 56.52 0.40 -6.02 16 19 C 0.06 1.11 5.35 -2.76 -0.01 1.09 16 20 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 21 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 22 H 0.10 0.85 8.14 -51.92 -0.42 0.43 16 23 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 24 H 0.08 1.30 7.82 -51.93 -0.41 0.90 16 25 H 0.08 1.74 7.95 -51.93 -0.41 1.33 16 26 H 0.04 0.81 8.02 -51.93 -0.42 0.40 16 27 H 0.05 1.26 7.80 -51.93 -0.41 0.86 16 28 H 0.05 1.10 8.14 -51.93 -0.42 0.67 16 29 H 0.02 0.33 7.57 -51.93 -0.39 -0.06 16 30 H 0.27 7.98 6.46 -40.82 -0.26 7.71 16 31 H 0.04 0.85 7.65 -51.93 -0.40 0.46 16 32 H 0.08 1.45 7.62 -51.93 -0.40 1.06 16 LS Contribution 270.66 15.07 4.08 4.08 Total: -1.00 -29.33 270.66 -8.20 -37.53 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -5.19 Total: -1.82 kcal Atomic # 6 Polarization: -15.71 SS G_CDS: 0.68 Total: -15.02 kcal Atomic # 7 Polarization: -38.23 SS G_CDS: -0.39 Total: -38.62 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -2.30 Total: -5.97 kcal Total LS contribution 4.08 Total: 4.08 kcal Total: -29.33 -8.20 -37.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307589953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.506 kcal (2) G-P(sol) polarization free energy of solvation -29.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.529 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.022 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds