Wall clock time and date at job start Mon Mar 30 2020 02:20:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81395 * 103.00077 * 2 1 4 4 H 1.09011 * 110.27006 * 307.08637 * 3 2 1 5 5 C 1.54589 * 110.39766 * 69.23213 * 3 2 1 6 6 C 1.54936 * 102.92607 * 140.91766 * 5 3 2 7 7 N 1.48541 * 103.22271 * 322.58930 * 6 5 3 8 8 C 1.46901 * 110.99838 * 159.72038 * 7 6 5 9 9 H 1.09002 * 109.47190 * 297.60628 * 8 7 6 10 10 C 1.52997 * 109.47051 * 177.60079 * 8 7 6 11 11 C 1.50699 * 109.47169 * 57.60077 * 8 7 6 12 12 H 1.08001 * 120.00191 * 28.09276 * 11 8 7 13 13 C 1.37879 * 120.00161 * 208.09425 * 11 8 7 14 14 N 1.31521 * 119.99797 * 353.76144 * 13 11 8 15 15 Si 1.86795 * 120.00296 * 173.49156 * 13 11 8 16 16 H 1.48505 * 109.47284 * 59.99670 * 15 13 11 17 17 H 1.48495 * 109.47432 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47001 * 299.99814 * 15 13 11 19 19 C 1.47894 * 105.82004 * 39.20545 * 7 6 5 20 20 H 1.08999 * 109.47334 * 300.00212 * 1 2 3 21 21 H 1.08997 * 109.47070 * 60.00300 * 1 2 3 22 22 H 1.09005 * 109.47038 * 180.02562 * 1 2 3 23 23 H 1.09007 * 110.72693 * 259.28006 * 5 3 2 24 24 H 1.09003 * 110.72344 * 22.38086 * 5 3 2 25 25 H 1.08997 * 110.67001 * 204.15614 * 6 5 3 26 26 H 1.08998 * 110.67049 * 81.02031 * 6 5 3 27 27 H 1.09006 * 109.47070 * 186.51391 * 10 8 7 28 28 H 1.08994 * 109.46973 * 306.51721 * 10 8 7 29 29 H 1.08999 * 109.46803 * 66.51816 * 10 8 7 30 30 H 0.97004 * 119.99821 * 354.56597 * 14 13 11 31 31 H 1.09006 * 109.91652 * 94.02151 * 19 7 6 32 32 H 1.08998 * 109.91874 * 215.11574 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7062 2.2742 -0.8158 5 6 1.8427 2.4080 1.3548 6 6 3.0133 3.3893 1.6141 7 7 4.1962 2.6493 1.1046 8 6 5.3077 3.5663 0.8188 9 1 5.0114 4.2633 0.0350 10 6 6.5245 2.7635 0.3542 11 6 5.6592 4.3340 2.0670 12 1 5.4788 3.8975 3.0383 13 6 6.2111 5.5937 1.9692 14 7 6.5443 6.0760 0.7918 15 14 6.4785 6.6185 3.5079 16 1 7.3919 5.8973 4.4304 17 1 7.0813 7.9234 3.1351 18 1 5.1754 6.8491 4.1816 19 6 3.7441 1.9646 -0.1259 20 1 -0.3634 0.5139 0.8899 21 1 -0.3633 0.5138 -0.8900 22 1 -0.3633 -1.0277 0.0005 23 1 0.8982 2.9465 1.2759 24 1 1.7894 1.6515 2.1377 25 1 3.1163 3.5922 2.6801 26 1 2.8697 4.3153 1.0573 27 1 7.3819 3.4290 0.2533 28 1 6.7500 1.9888 1.0871 29 1 6.3084 2.3008 -0.6087 30 1 6.4758 5.5173 0.0018 31 1 3.9680 2.5804 -0.9971 32 1 4.2404 0.9984 -0.2169 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307589953.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:05 Heat of formation + Delta-G solvation = -24.544688 kcal Electronic energy + Delta-G solvation = -12923.204358 eV Core-core repulsion = 10815.716731 eV Total energy + Delta-G solvation = -2107.487627 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.95779 -36.04026 -33.14850 -30.20903 -29.99916 -29.11877 -26.78359 -23.58552 -22.09657 -21.41388 -18.95646 -17.72599 -16.92849 -16.46508 -15.62692 -15.23201 -15.01459 -14.66238 -14.24533 -14.05788 -13.91756 -13.35174 -13.15554 -13.00173 -12.77822 -12.55817 -12.18161 -12.14997 -11.96422 -11.92816 -11.86229 -10.80022 -10.67881 -10.44419 -9.22263 -8.66646 -8.61531 -6.33689 0.70631 1.53795 1.60776 1.64311 1.80461 2.56352 3.09793 3.30039 3.47718 3.65937 4.08285 4.30762 4.34887 4.38472 4.43536 4.47182 4.61223 4.72609 4.73616 4.79936 4.83890 4.91078 4.98665 5.11137 5.14455 5.43001 5.86813 5.97866 6.30112 6.45625 6.66997 7.46530 8.75528 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.055770 B = 0.007447 C = 0.006911 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 501.939103 B = 3759.208657 C = 4050.603287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 S -0.287 6.287 3 C -0.052 4.052 4 H 0.098 0.902 5 C -0.105 4.105 6 C 0.059 3.941 7 N -0.516 5.516 8 C 0.188 3.812 9 H -0.025 1.025 10 C -0.118 4.118 11 C -0.589 4.589 12 H 0.047 0.953 13 C -0.028 4.028 14 N -0.938 5.938 15 Si 1.112 2.888 16 H -0.272 1.272 17 H -0.286 1.286 18 H -0.270 1.270 19 C 0.059 3.941 20 H 0.085 0.915 21 H 0.085 0.915 22 H 0.114 0.886 23 H 0.094 0.906 24 H 0.086 0.914 25 H 0.070 0.930 26 H 0.020 0.980 27 H 0.030 0.970 28 H 0.047 0.953 29 H 0.037 0.963 30 H 0.257 0.743 31 H 0.035 0.965 32 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.286 -8.542 -0.813 14.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.280 4.280 2 S -0.061 6.061 3 C -0.182 4.182 4 H 0.116 0.884 5 C -0.145 4.145 6 C -0.070 4.070 7 N -0.241 5.241 8 C 0.080 3.920 9 H -0.007 1.007 10 C -0.177 4.177 11 C -0.627 4.627 12 H 0.066 0.934 13 C -0.226 4.226 14 N -0.575 5.575 15 Si 0.934 3.066 16 H -0.197 1.197 17 H -0.211 1.211 18 H -0.196 1.196 19 C -0.071 4.071 20 H 0.104 0.896 21 H 0.104 0.896 22 H 0.133 0.867 23 H 0.113 0.887 24 H 0.105 0.895 25 H 0.089 0.911 26 H 0.038 0.962 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.056 0.944 30 H 0.067 0.933 31 H 0.053 0.947 32 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -10.918 -8.337 0.069 13.737 hybrid contribution -1.108 0.253 -1.493 1.876 sum -12.026 -8.084 -1.423 14.561 Atomic orbital electron populations 1.23442 0.91181 1.07515 1.05859 1.87013 1.10663 1.10466 1.97943 1.23920 0.98506 0.94206 1.01521 0.88353 1.22892 0.97934 0.98433 0.95253 1.22867 0.89338 0.94448 1.00373 1.64807 1.06353 1.27981 1.24943 1.19498 0.88696 0.89011 0.94776 1.00724 1.21706 0.98497 0.98993 0.98461 1.22064 1.44196 1.03475 0.92964 0.93449 1.27198 0.93020 0.97751 1.04660 1.70915 1.47043 1.39954 0.99620 0.82992 0.77514 0.74647 0.71424 1.19747 1.21114 1.19572 1.22588 0.92725 0.99205 0.92536 0.89555 0.89583 0.86709 0.88705 0.89526 0.91118 0.96204 0.95057 0.93379 0.94450 0.93341 0.94675 0.90752 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.86 10.69 113.37 1.21 -0.65 16 2 S -0.29 -7.57 21.38 -56.49 -1.21 -8.78 16 3 C -0.05 -1.54 3.49 31.47 0.11 -1.43 16 4 H 0.10 2.60 8.14 -2.38 -0.02 2.58 16 5 C -0.11 -3.07 6.56 31.80 0.21 -2.86 16 6 C 0.06 2.33 5.72 86.65 0.50 2.83 16 7 N -0.52 -22.75 5.10 -862.24 -4.40 -27.15 16 8 C 0.19 9.67 1.40 44.17 0.06 9.73 16 9 H -0.02 -1.41 6.79 -2.39 -0.02 -1.43 16 10 C -0.12 -5.67 8.92 71.98 0.64 -5.03 16 11 C -0.59 -33.03 7.47 25.60 0.19 -32.84 16 12 H 0.05 2.70 7.82 -2.91 -0.02 2.67 16 13 C -0.03 -1.60 5.45 84.65 0.46 -1.13 16 14 N -0.94 -57.06 13.56 21.45 0.29 -56.77 16 15 Si 1.11 50.11 29.91 68.60 2.05 52.16 16 16 H -0.27 -11.52 7.11 99.48 0.71 -10.82 16 17 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 18 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 19 C 0.06 2.18 5.35 86.45 0.46 2.64 16 20 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 21 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 22 H 0.11 1.54 8.14 -2.39 -0.02 1.52 16 23 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 24 H 0.09 2.49 7.82 -2.39 -0.02 2.47 16 25 H 0.07 2.94 7.95 -2.39 -0.02 2.92 16 26 H 0.02 0.85 8.02 -2.39 -0.02 0.83 16 27 H 0.03 1.58 7.80 -2.38 -0.02 1.56 16 28 H 0.05 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.04 1.58 7.57 -2.39 -0.02 1.56 16 30 H 0.26 15.81 6.46 -92.71 -0.60 15.21 16 31 H 0.03 1.36 7.65 -2.38 -0.02 1.34 16 32 H 0.07 2.78 7.62 -2.39 -0.02 2.77 16 Total: -1.00 -63.79 270.66 1.82 -61.97 By element: Atomic # 1 Polarization: 6.08 SS G_CDS: 1.24 Total: 7.31 kcal Atomic # 6 Polarization: -32.59 SS G_CDS: 3.84 Total: -28.75 kcal Atomic # 7 Polarization: -79.81 SS G_CDS: -4.11 Total: -83.92 kcal Atomic # 14 Polarization: 50.11 SS G_CDS: 2.05 Total: 52.16 kcal Atomic # 16 Polarization: -7.57 SS G_CDS: -1.21 Total: -8.78 kcal Total: -63.79 1.82 -61.97 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307589953.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.427 kcal (2) G-P(sol) polarization free energy of solvation -63.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.818 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.972 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds