Wall clock time and date at job start Mon Mar 30 2020 02:20:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81401 * 1 3 3 C 1.81396 * 103.00162 * 2 1 4 4 H 1.08996 * 110.28824 * 55.66854 * 3 2 1 5 5 C 1.54259 * 110.32159 * 293.54628 * 3 2 1 6 6 C 1.54386 * 105.15033 * 241.05294 * 5 3 2 7 7 N 1.48718 * 104.51543 * 336.27172 * 6 5 3 8 8 C 1.46897 * 111.01898 * 158.96649 * 7 6 5 9 9 H 1.09001 * 109.46907 * 301.09441 * 8 7 6 10 10 C 1.53001 * 109.47011 * 61.09025 * 8 7 6 11 11 C 1.50700 * 109.47334 * 181.08898 * 8 7 6 12 12 H 1.08000 * 120.00080 * 0.02562 * 11 8 7 13 13 C 1.37876 * 119.99638 * 179.97438 * 11 8 7 14 14 N 1.31512 * 119.99849 * 180.02562 * 13 11 8 15 15 Si 1.86799 * 120.00242 * 0.02562 * 13 11 8 16 16 H 1.48506 * 109.46895 * 89.99775 * 15 13 11 17 17 H 1.48498 * 109.47182 * 209.99289 * 15 13 11 18 18 H 1.48497 * 109.47150 * 329.99539 * 15 13 11 19 19 C 1.48560 * 104.29154 * 39.35844 * 7 6 5 20 20 H 1.09004 * 109.47379 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47211 * 300.00027 * 1 2 3 22 22 H 1.08994 * 109.47168 * 60.00071 * 1 2 3 23 23 H 1.08997 * 110.32525 * 359.97438 * 5 3 2 24 24 H 1.09001 * 110.32675 * 122.10613 * 5 3 2 25 25 H 1.08999 * 110.41118 * 94.97513 * 6 5 3 26 26 H 1.08997 * 110.41293 * 217.41848 * 6 5 3 27 27 H 1.09006 * 109.47078 * 305.56461 * 10 8 7 28 28 H 1.09004 * 109.47196 * 65.56328 * 10 8 7 29 29 H 1.08996 * 109.47128 * 185.56343 * 10 8 7 30 30 H 0.96999 * 120.00430 * 180.02562 * 14 13 11 31 31 H 1.08992 * 110.41637 * 201.79331 * 19 7 6 32 32 H 1.09001 * 110.51022 * 79.40091 * 19 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.7453 2.2654 0.8442 5 6 1.7796 2.4195 -1.3261 6 6 3.0783 2.9576 -1.9643 7 7 4.0088 3.1400 -0.8186 8 6 5.4055 3.1638 -1.2729 9 1 5.6367 2.2303 -1.7860 10 6 5.6096 4.3375 -2.2331 11 6 6.3179 3.3229 -0.0841 12 1 5.9017 3.3984 0.9097 13 6 7.6838 3.3712 -0.2650 14 7 8.4801 3.5096 0.7725 15 14 8.4036 3.2400 -1.9838 16 1 8.5273 4.5973 -2.5735 17 1 9.7452 2.6075 -1.9117 18 1 7.5105 2.4110 -2.8325 19 6 3.7524 1.9645 0.0528 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 1.3175 1.6774 -1.9772 24 1 1.0856 3.2375 -1.1328 25 1 3.4832 2.2330 -2.6707 26 1 2.8918 3.9101 -2.4603 27 1 4.8820 4.2755 -3.0424 28 1 5.4746 5.2754 -1.6943 29 1 6.6173 4.2977 -2.6465 30 1 9.4411 3.5439 0.6452 31 1 4.0741 2.1705 1.0736 32 1 4.2627 1.0829 -0.3352 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307589955.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:20:07 Heat of formation + Delta-G solvation = 8.900463 kcal Electronic energy + Delta-G solvation = -12941.619703 eV Core-core repulsion = 10835.582366 eV Total energy + Delta-G solvation = -2106.037337 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.40884 -33.96541 -31.63854 -29.26326 -28.55342 -28.10779 -24.97579 -21.94623 -20.52524 -19.53770 -16.83991 -16.33654 -15.53836 -15.10157 -14.25735 -13.85211 -13.54542 -13.40808 -13.14052 -12.49827 -12.38532 -12.14060 -12.06029 -11.53317 -11.01875 -10.86379 -10.72533 -10.53960 -10.40928 -10.15370 -9.63809 -9.48778 -9.08958 -8.56854 -7.61200 -7.55806 -6.07330 -4.06217 1.78878 2.67860 3.26487 3.36051 3.38310 4.39378 4.83450 4.85823 4.93304 5.09176 5.11224 5.23810 5.34367 5.62245 5.65486 5.77946 5.98220 6.15247 6.21415 6.32507 6.36124 6.42932 6.48419 6.67149 6.75583 7.16961 7.48996 7.84148 7.89217 8.61513 8.99164 9.54453 11.05678 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.048186 B = 0.008115 C = 0.007551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.945691 B = 3449.548139 C = 3707.017431 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 S -0.263 6.263 3 C -0.057 4.057 4 H 0.092 0.908 5 C -0.117 4.117 6 C 0.030 3.970 7 N -0.491 5.491 8 C 0.172 3.828 9 H 0.001 0.999 10 C -0.145 4.145 11 C -0.506 4.506 12 H 0.081 0.919 13 C 0.071 3.929 14 N -0.898 5.898 15 Si 0.885 3.115 16 H -0.278 1.278 17 H -0.296 1.296 18 H -0.269 1.269 19 C 0.074 3.926 20 H 0.096 0.904 21 H 0.073 0.927 22 H 0.074 0.926 23 H 0.070 0.930 24 H 0.071 0.929 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.264 0.736 31 H 0.092 0.908 32 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.081 -3.877 -4.521 15.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.291 4.291 2 S -0.036 6.036 3 C -0.186 4.186 4 H 0.110 0.890 5 C -0.157 4.157 6 C -0.099 4.099 7 N -0.216 5.216 8 C 0.064 3.936 9 H 0.019 0.981 10 C -0.202 4.202 11 C -0.544 4.544 12 H 0.099 0.901 13 C -0.131 4.131 14 N -0.536 5.536 15 Si 0.716 3.284 16 H -0.205 1.205 17 H -0.224 1.224 18 H -0.195 1.195 19 C -0.055 4.055 20 H 0.114 0.886 21 H 0.092 0.908 22 H 0.093 0.907 23 H 0.089 0.911 24 H 0.089 0.911 25 H 0.057 0.943 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges -13.291 -4.236 -4.162 14.557 hybrid contribution -0.117 0.259 -1.323 1.353 sum -13.408 -3.977 -5.485 15.023 Atomic orbital electron populations 1.23346 0.95196 1.05898 1.04670 1.86980 1.06288 1.12518 1.97845 1.24075 1.01712 0.91786 1.01040 0.88970 1.22693 0.98341 0.99787 0.94915 1.23102 0.92586 0.99728 0.94510 1.65472 1.06096 1.37197 1.12797 1.19899 0.85239 0.93244 0.95228 0.98115 1.22163 0.98669 1.01323 0.98055 1.20921 0.89918 1.50099 0.93474 0.90071 1.24910 0.96994 0.94651 0.96524 1.69875 1.03868 1.50284 1.29612 0.86891 0.77896 0.78194 0.85448 1.20498 1.22378 1.19477 1.22665 0.89102 0.93182 1.00572 0.88551 0.90750 0.90748 0.91103 0.91066 0.94321 0.90520 0.95109 0.91956 0.94125 0.92592 0.88957 0.93214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.23 10.62 101.05 1.07 -0.15 16 2 S -0.26 -3.79 21.40 -107.50 -2.30 -6.09 16 3 C -0.06 -0.87 3.58 -25.35 -0.09 -0.97 16 4 H 0.09 1.34 8.14 -51.93 -0.42 0.92 16 5 C -0.12 -1.65 6.52 -25.35 -0.17 -1.82 16 6 C 0.03 0.50 5.40 -2.09 -0.01 0.49 16 7 N -0.49 -10.23 5.19 -223.27 -1.16 -11.39 16 8 C 0.17 4.12 1.42 -68.87 -0.10 4.03 16 9 H 0.00 0.03 7.04 -51.93 -0.37 -0.33 16 10 C -0.14 -3.20 8.60 37.16 0.32 -2.88 16 11 C -0.51 -14.26 8.72 -34.44 -0.30 -14.56 16 12 H 0.08 2.49 7.41 -52.49 -0.39 2.10 16 13 C 0.07 2.06 5.45 -17.82 -0.10 1.96 16 14 N -0.90 -27.51 13.96 55.43 0.77 -26.74 16 15 Si 0.89 22.10 24.32 -169.99 -4.13 17.97 16 16 H -0.28 -6.75 6.92 56.52 0.39 -6.35 16 17 H -0.30 -7.40 7.11 56.52 0.40 -6.99 16 18 H -0.27 -6.51 6.53 56.52 0.37 -6.14 16 19 C 0.07 1.44 5.35 -2.18 -0.01 1.43 16 20 H 0.10 0.83 8.14 -51.92 -0.42 0.41 16 21 H 0.07 0.68 8.14 -51.92 -0.42 0.26 16 22 H 0.07 0.68 7.82 -51.93 -0.41 0.27 16 23 H 0.07 0.91 7.32 -51.93 -0.38 0.53 16 24 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 25 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 26 H 0.08 1.21 7.55 -51.93 -0.39 0.82 16 27 H 0.03 0.58 6.70 -51.93 -0.35 0.23 16 28 H 0.06 1.39 8.14 -51.93 -0.42 0.96 16 29 H 0.04 0.93 3.44 -51.93 -0.18 0.75 16 30 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 31 H 0.09 1.93 7.58 -51.93 -0.39 1.53 16 32 H 0.05 1.04 7.60 -51.93 -0.39 0.65 16 LS Contribution 260.52 15.07 3.93 3.93 Total: -1.00 -29.96 260.52 -7.23 -37.19 By element: Atomic # 1 Polarization: 2.55 SS G_CDS: -4.95 Total: -2.41 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: 0.62 Total: -12.46 kcal Atomic # 7 Polarization: -37.74 SS G_CDS: -0.38 Total: -38.13 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -4.13 Total: 17.97 kcal Atomic # 16 Polarization: -3.79 SS G_CDS: -2.30 Total: -6.09 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -29.96 -7.23 -37.19 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307589955.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.089 kcal (2) G-P(sol) polarization free energy of solvation -29.961 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.188 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds