Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00148 * 2 1 4 4 C 1.50693 * 109.46870 * 293.95431 * 3 2 1 5 5 H 1.07993 * 120.00433 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99847 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00052 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99846 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46836 * 90.00285 * 8 6 4 10 10 H 1.48495 * 109.47273 * 330.00185 * 8 6 4 11 11 H 1.48498 * 109.47264 * 210.00119 * 8 6 4 12 12 C 1.46911 * 111.00115 * 123.95412 * 2 1 3 13 13 C 1.52998 * 109.46979 * 160.32894 * 12 2 1 14 14 H 1.08993 * 109.60984 * 56.18865 * 13 12 2 15 15 C 1.53853 * 109.60479 * 176.34945 * 13 12 2 16 16 C 1.55140 * 106.89806 * 167.17487 * 15 13 12 17 17 S 1.83457 * 102.20289 * 317.88206 * 16 15 13 18 18 C 1.54277 * 109.60710 * 295.84607 * 13 12 2 19 19 H 1.08995 * 109.47069 * 65.06435 * 1 2 3 20 20 H 1.08999 * 109.47550 * 185.07036 * 1 2 3 21 21 H 1.09002 * 109.47274 * 305.06653 * 1 2 3 22 22 H 1.09004 * 109.46879 * 173.95083 * 3 2 1 23 23 H 1.08994 * 109.46866 * 53.95654 * 3 2 1 24 24 H 0.97001 * 119.99641 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46843 * 280.32826 * 12 2 1 26 26 H 1.09001 * 109.46517 * 40.32969 * 12 2 1 27 27 H 1.09001 * 109.97858 * 286.53400 * 15 13 12 28 28 H 1.09007 * 109.97794 * 47.81650 * 15 13 12 29 29 H 1.09003 * 110.85859 * 199.70642 * 16 15 13 30 30 H 1.08996 * 110.85830 * 76.06207 * 16 15 13 31 31 H 1.08991 * 110.40595 * 330.92532 * 18 13 12 32 32 H 1.09004 * 110.39814 * 93.33869 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0277 3.3491 -1.5289 7 7 1.7153 3.9386 -2.6622 8 14 3.0009 4.2757 -0.2313 9 1 4.4533 4.0622 -0.4556 10 1 2.6296 3.7760 1.1168 11 1 2.6937 5.7257 -0.3237 12 6 1.9955 -0.7660 1.1377 13 6 3.4463 -1.1628 0.8576 14 1 4.0356 -0.2703 0.6476 15 6 4.0298 -1.8857 2.0840 16 6 5.3598 -2.5425 1.6298 17 16 4.9145 -3.2231 -0.0147 18 6 3.4978 -2.1145 -0.3556 19 1 -0.3633 0.4332 -0.9318 20 1 -0.3634 -1.0236 0.0908 21 1 -0.3634 0.5904 0.8411 22 1 3.0798 1.3443 0.1083 23 1 1.5612 1.9273 0.8309 24 1 1.9899 4.8547 -2.8242 25 1 1.9537 -0.1537 2.0384 26 1 1.3942 -1.6640 1.2803 27 1 4.2221 -1.1689 2.8822 28 1 3.3355 -2.6515 2.4301 29 1 5.6524 -3.3396 2.3133 30 1 6.1500 -1.7971 1.5402 31 1 2.5744 -2.6890 -0.4273 32 1 3.6682 -1.5514 -1.2733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000307988023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -6.217539 kcal Electronic energy + Delta-G solvation = -12839.175950 eV Core-core repulsion = 10732.483047 eV Total energy + Delta-G solvation = -2106.692902 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -37.87004 -35.14086 -32.44312 -29.87276 -28.07605 -26.75215 -24.44149 -22.82365 -20.66987 -19.50421 -16.94599 -16.45260 -15.62234 -14.80156 -14.55762 -14.17302 -13.65728 -13.33174 -12.91240 -12.58307 -12.39084 -11.91873 -11.78917 -11.65920 -11.20326 -11.12104 -10.85636 -10.68691 -10.48514 -10.21949 -9.91448 -9.71754 -9.29470 -8.59783 -7.55389 -7.44520 -6.08286 -4.05750 2.00680 2.57012 3.24766 3.32614 3.33247 4.38308 4.47703 4.71442 4.87366 5.10964 5.23342 5.29308 5.33590 5.52669 5.67604 5.76790 5.82479 5.83099 5.94917 6.01996 6.23755 6.30353 6.40502 6.62671 6.80971 6.92908 7.55172 7.83539 7.98488 8.61772 9.00537 9.53340 11.04862 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.008159 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.701055 B = 3430.993124 C = 3643.793452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.532 5.532 3 C 0.161 3.839 4 C -0.510 4.510 5 H 0.081 0.919 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.873 3.127 9 H -0.275 1.275 10 H -0.269 1.269 11 H -0.286 1.286 12 C 0.064 3.936 13 C -0.093 4.093 14 H 0.086 0.914 15 C -0.124 4.124 16 C -0.067 4.067 17 S -0.328 6.328 18 C -0.035 4.035 19 H 0.078 0.922 20 H 0.046 0.954 21 H 0.013 0.987 22 H 0.023 0.977 23 H -0.012 1.012 24 H 0.264 0.736 25 H 0.030 0.970 26 H 0.066 0.934 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.097 0.903 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.566 -10.664 10.163 15.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.256 5.256 3 C 0.035 3.965 4 C -0.548 4.548 5 H 0.099 0.901 6 C -0.133 4.133 7 N -0.538 5.538 8 Si 0.700 3.300 9 H -0.201 1.201 10 H -0.194 1.194 11 H -0.211 1.211 12 C -0.066 4.066 13 C -0.113 4.113 14 H 0.104 0.896 15 C -0.163 4.163 16 C -0.215 4.215 17 S -0.102 6.102 18 C -0.183 4.183 19 H 0.096 0.904 20 H 0.065 0.935 21 H 0.032 0.968 22 H 0.041 0.959 23 H 0.005 0.995 24 H 0.074 0.926 25 H 0.048 0.952 26 H 0.084 0.916 27 H 0.099 0.901 28 H 0.095 0.905 29 H 0.116 0.884 30 H 0.106 0.894 31 H 0.110 0.890 32 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 4.224 -11.605 8.969 15.263 hybrid contribution -0.183 2.010 1.970 2.821 sum 4.041 -9.594 10.939 15.101 Atomic orbital electron populations 1.22216 0.87931 0.99054 1.01648 1.61935 1.07408 1.16615 1.39645 1.20234 0.94904 0.84088 0.97282 1.21029 1.35660 0.97232 1.00881 0.90102 1.24902 0.95788 0.97377 0.95230 1.69891 1.46836 1.13302 1.23805 0.86898 0.80968 0.79419 0.82711 1.20093 1.19376 1.21142 1.22072 0.93833 0.97818 0.92927 1.22009 0.98001 0.98896 0.92381 0.89557 1.22605 0.95030 1.00070 0.98574 1.24156 1.00281 1.02352 0.94719 1.87467 1.44043 1.52213 1.26496 1.23934 0.95918 0.96684 1.01754 0.90351 0.93474 0.96803 0.95860 0.99463 0.92639 0.95230 0.91576 0.90084 0.90470 0.88428 0.89361 0.89018 0.87851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.31 60.06 0.56 1.29 16 2 N -0.53 -10.58 4.40 -244.37 -1.07 -11.66 16 3 C 0.16 3.80 3.62 -4.98 -0.02 3.78 16 4 C -0.51 -14.26 9.14 -34.44 -0.31 -14.57 16 5 H 0.08 2.46 7.34 -52.49 -0.39 2.08 16 6 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.87 21.28 27.47 -169.99 -4.67 16.61 16 9 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 11 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 12 C 0.06 1.00 4.29 -3.82 -0.02 0.99 16 13 C -0.09 -1.36 2.64 -89.51 -0.24 -1.60 16 14 H 0.09 1.44 6.70 -51.93 -0.35 1.09 16 15 C -0.12 -1.42 5.78 -25.16 -0.15 -1.57 16 16 C -0.07 -0.76 7.38 38.29 0.28 -0.48 16 17 S -0.33 -4.75 23.26 -107.50 -2.50 -7.25 16 18 C -0.04 -0.54 6.54 37.83 0.25 -0.29 16 19 H 0.08 1.60 7.01 -51.93 -0.36 1.24 16 20 H 0.05 0.72 7.85 -51.93 -0.41 0.31 16 21 H 0.01 0.25 8.08 -51.93 -0.42 -0.17 16 22 H 0.02 0.55 6.01 -51.93 -0.31 0.24 16 23 H -0.01 -0.30 7.13 -51.93 -0.37 -0.67 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.03 0.47 8.00 -51.93 -0.42 0.05 16 26 H 0.07 0.92 7.67 -51.93 -0.40 0.52 16 27 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 28 H 0.08 0.82 8.11 -51.92 -0.42 0.40 16 29 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 31 H 0.09 1.36 7.84 -51.93 -0.41 0.95 16 32 H 0.10 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 266.62 15.07 4.02 4.02 Total: -1.00 -29.77 266.62 -8.30 -38.07 By element: Atomic # 1 Polarization: 2.50 SS G_CDS: -5.11 Total: -2.60 kcal Atomic # 6 Polarization: -10.83 SS G_CDS: 0.26 Total: -10.57 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.30 Total: -38.27 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -4.67 Total: 16.61 kcal Atomic # 16 Polarization: -4.75 SS G_CDS: -2.50 Total: -7.25 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -29.77 -8.30 -38.07 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307988023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.849 kcal (2) G-P(sol) polarization free energy of solvation -29.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds