Wall clock time and date at job start Mon Mar 30 2020 02:28:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46901 * 111.00148 * 2 1 4 4 C 1.50693 * 109.46870 * 293.95431 * 3 2 1 5 5 H 1.07993 * 120.00433 * 0.02562 * 4 3 2 6 6 C 1.37882 * 119.99847 * 180.02562 * 4 3 2 7 7 N 1.31515 * 120.00052 * 179.97438 * 6 4 3 8 8 Si 1.86805 * 119.99846 * 359.97438 * 6 4 3 9 9 H 1.48498 * 109.46836 * 90.00285 * 8 6 4 10 10 H 1.48495 * 109.47273 * 330.00185 * 8 6 4 11 11 H 1.48498 * 109.47264 * 210.00119 * 8 6 4 12 12 C 1.46911 * 111.00115 * 123.95412 * 2 1 3 13 13 C 1.52998 * 109.46979 * 160.32894 * 12 2 1 14 14 H 1.08993 * 109.60984 * 56.18865 * 13 12 2 15 15 C 1.53853 * 109.60479 * 176.34945 * 13 12 2 16 16 C 1.55140 * 106.89806 * 167.17487 * 15 13 12 17 17 S 1.83457 * 102.20289 * 317.88206 * 16 15 13 18 18 C 1.54277 * 109.60710 * 295.84607 * 13 12 2 19 19 H 1.08995 * 109.47069 * 65.06435 * 1 2 3 20 20 H 1.08999 * 109.47550 * 185.07036 * 1 2 3 21 21 H 1.09002 * 109.47274 * 305.06653 * 1 2 3 22 22 H 1.09004 * 109.46879 * 173.95083 * 3 2 1 23 23 H 1.08994 * 109.46866 * 53.95654 * 3 2 1 24 24 H 0.97001 * 119.99641 * 179.97438 * 7 6 4 25 25 H 1.09000 * 109.46843 * 280.32826 * 12 2 1 26 26 H 1.09001 * 109.46517 * 40.32969 * 12 2 1 27 27 H 1.09001 * 109.97858 * 286.53400 * 15 13 12 28 28 H 1.09007 * 109.97794 * 47.81650 * 15 13 12 29 29 H 1.09003 * 110.85859 * 199.70642 * 16 15 13 30 30 H 1.08996 * 110.85830 * 76.06207 * 16 15 13 31 31 H 1.08991 * 110.40595 * 330.92532 * 18 13 12 32 32 H 1.09004 * 110.39814 * 93.33869 * 18 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0739 1.5115 -2.0484 6 6 2.0277 3.3491 -1.5289 7 7 1.7153 3.9386 -2.6622 8 14 3.0009 4.2757 -0.2313 9 1 4.4533 4.0622 -0.4556 10 1 2.6296 3.7760 1.1168 11 1 2.6937 5.7257 -0.3237 12 6 1.9955 -0.7660 1.1377 13 6 3.4463 -1.1628 0.8576 14 1 4.0356 -0.2703 0.6476 15 6 4.0298 -1.8857 2.0840 16 6 5.3598 -2.5425 1.6298 17 16 4.9145 -3.2231 -0.0147 18 6 3.4978 -2.1145 -0.3556 19 1 -0.3633 0.4332 -0.9318 20 1 -0.3634 -1.0236 0.0908 21 1 -0.3634 0.5904 0.8411 22 1 3.0798 1.3443 0.1083 23 1 1.5612 1.9273 0.8309 24 1 1.9899 4.8547 -2.8242 25 1 1.9537 -0.1537 2.0384 26 1 1.3942 -1.6640 1.2803 27 1 4.2221 -1.1689 2.8822 28 1 3.3355 -2.6515 2.4301 29 1 5.6524 -3.3396 2.3133 30 1 6.1500 -1.7971 1.5402 31 1 2.5744 -2.6890 -0.4273 32 1 3.6682 -1.5514 -1.2733 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000307988023.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:45 Heat of formation + Delta-G solvation = -25.554318 kcal Electronic energy + Delta-G solvation = -12840.014456 eV Core-core repulsion = 10732.483047 eV Total energy + Delta-G solvation = -2107.531408 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.23027 -36.49040 -34.54286 -31.04153 -29.94681 -28.06400 -25.89527 -24.30448 -22.09906 -20.84557 -19.04032 -17.56381 -16.89321 -16.48399 -16.06919 -15.72009 -15.01263 -14.73353 -14.41110 -14.22284 -13.73315 -13.41673 -13.12791 -12.88205 -12.78249 -12.43340 -12.26986 -12.14535 -11.97239 -11.84838 -11.56881 -11.36790 -10.83056 -10.77252 -9.01541 -8.69052 -8.29053 -6.32206 0.95318 1.32992 1.34173 1.44400 1.49628 2.32845 3.04047 3.18124 3.67232 3.75762 4.02272 4.19568 4.30147 4.47240 4.51539 4.56465 4.66048 4.73091 4.75966 4.84674 4.88765 4.92247 5.04541 5.13631 5.20991 5.28059 5.55147 5.98134 6.36324 6.65744 6.75009 7.31515 8.87701 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.034276 B = 0.008159 C = 0.007682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.701055 B = 3430.993124 C = 3643.793452 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 N -0.549 5.549 3 C 0.174 3.826 4 C -0.516 4.516 5 H 0.037 0.963 6 C 0.006 3.994 7 N -0.949 5.949 8 Si 0.945 3.055 9 H -0.266 1.266 10 H -0.249 1.249 11 H -0.282 1.282 12 C 0.066 3.934 13 C -0.091 4.091 14 H 0.063 0.937 15 C -0.114 4.114 16 C -0.055 4.055 17 S -0.364 6.364 18 C -0.030 4.030 19 H 0.044 0.956 20 H 0.082 0.918 21 H 0.018 0.982 22 H 0.028 0.972 23 H -0.013 1.013 24 H 0.266 0.734 25 H 0.039 0.961 26 H 0.091 0.909 27 H 0.101 0.899 28 H 0.093 0.907 29 H 0.124 0.876 30 H 0.092 0.908 31 H 0.094 0.906 32 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.505 -11.481 13.252 18.103 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 N -0.273 5.273 3 C 0.046 3.954 4 C -0.554 4.554 5 H 0.055 0.945 6 C -0.191 4.191 7 N -0.590 5.590 8 Si 0.768 3.232 9 H -0.191 1.191 10 H -0.173 1.173 11 H -0.208 1.208 12 C -0.063 4.063 13 C -0.112 4.112 14 H 0.082 0.918 15 C -0.153 4.153 16 C -0.202 4.202 17 S -0.138 6.138 18 C -0.178 4.178 19 H 0.063 0.937 20 H 0.101 0.899 21 H 0.037 0.963 22 H 0.046 0.954 23 H 0.004 0.996 24 H 0.075 0.925 25 H 0.058 0.942 26 H 0.110 0.890 27 H 0.120 0.880 28 H 0.111 0.889 29 H 0.142 0.858 30 H 0.111 0.889 31 H 0.113 0.887 32 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 5.160 -12.452 12.072 18.094 hybrid contribution -0.514 2.178 0.941 2.427 sum 4.646 -10.274 13.013 17.218 Atomic orbital electron populations 1.22178 0.87245 1.01061 1.00048 1.61804 1.08229 1.14764 1.42516 1.19951 0.95108 0.85889 0.94416 1.21303 1.34712 0.97482 1.01952 0.94460 1.25863 0.97076 0.98521 0.97625 1.70055 1.48713 1.13903 1.26330 0.85749 0.79438 0.77723 0.80273 1.19060 1.17285 1.20806 1.22169 0.94564 0.98139 0.91456 1.22009 0.97264 0.98204 0.93700 0.91843 1.22558 0.94986 1.00552 0.97179 1.24305 1.00438 1.03055 0.92416 1.87599 1.44094 1.52276 1.29833 1.23781 0.96383 0.96682 1.00942 0.93708 0.89941 0.96330 0.95421 0.99559 0.92493 0.94245 0.89032 0.88045 0.88891 0.85783 0.88915 0.88718 0.90955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.31 127.69 1.19 2.73 16 2 N -0.55 -21.34 4.40 -927.05 -4.08 -25.41 16 3 C 0.17 8.07 3.62 85.55 0.31 8.38 16 4 C -0.52 -29.69 9.14 25.60 0.23 -29.46 16 5 H 0.04 2.40 7.34 -2.91 -0.02 2.38 16 6 C 0.01 0.36 5.47 84.66 0.46 0.83 16 7 N -0.95 -59.61 13.96 21.45 0.30 -59.31 16 8 Si 0.94 43.70 27.47 68.60 1.88 45.59 16 9 H -0.27 -11.81 7.11 99.48 0.71 -11.11 16 10 H -0.25 -10.65 6.54 99.48 0.65 -10.00 16 11 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 12 C 0.07 1.89 4.29 86.30 0.37 2.26 16 13 C -0.09 -2.48 2.64 -10.07 -0.03 -2.51 16 14 H 0.06 2.02 6.70 -2.39 -0.02 2.00 16 15 C -0.11 -2.15 5.78 31.62 0.18 -1.97 16 16 C -0.05 -1.05 7.38 72.72 0.54 -0.52 16 17 S -0.36 -10.00 23.26 -56.49 -1.31 -11.31 16 18 C -0.03 -0.89 6.54 72.41 0.47 -0.42 16 19 H 0.04 1.88 7.01 -2.39 -0.02 1.87 16 20 H 0.08 2.35 7.85 -2.39 -0.02 2.33 16 21 H 0.02 0.64 8.08 -2.39 -0.02 0.62 16 22 H 0.03 1.27 6.01 -2.38 -0.01 1.26 16 23 H -0.01 -0.61 7.13 -2.39 -0.02 -0.63 16 24 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 25 H 0.04 1.09 8.00 -2.39 -0.02 1.07 16 26 H 0.09 2.19 7.67 -2.39 -0.02 2.17 16 27 H 0.10 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.09 1.52 8.11 -2.38 -0.02 1.50 16 29 H 0.12 1.80 8.14 -2.39 -0.02 1.78 16 30 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 31 H 0.09 2.70 7.84 -2.39 -0.02 2.68 16 32 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 Total: -1.00 -66.22 266.62 1.54 -64.67 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: 1.02 Total: 6.44 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: 3.73 Total: -20.66 kcal Atomic # 7 Polarization: -80.94 SS G_CDS: -3.78 Total: -84.72 kcal Atomic # 14 Polarization: 43.70 SS G_CDS: 1.88 Total: 45.59 kcal Atomic # 16 Polarization: -10.00 SS G_CDS: -1.31 Total: -11.31 kcal Total: -66.22 1.54 -64.67 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000307988023.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.118 kcal (2) G-P(sol) polarization free energy of solvation -66.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.098 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.543 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds