Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 O 1.46293 * 111.00419 * 59.99747 * 12 2 1 14 14 C 1.42896 * 114.00260 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47144 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.75014 * 57.02174 * 15 14 13 17 17 C 1.55308 * 110.84594 * 180.71826 * 15 14 13 18 18 C 1.54947 * 100.94011 * 152.32701 * 17 15 14 19 19 O 1.43645 * 105.13613 * 323.55575 * 18 17 15 20 20 C 1.43236 * 109.97446 * 24.42515 * 19 18 17 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00904 * 111.00313 * 183.95682 * 12 2 1 26 26 H 1.08994 * 109.47654 * 300.00735 * 14 13 12 27 27 H 1.09003 * 109.46980 * 60.00395 * 14 13 12 28 28 H 1.09000 * 111.12487 * 270.24047 * 17 15 14 29 29 H 1.08995 * 111.12742 * 34.40956 * 17 15 14 30 30 H 1.08998 * 110.31079 * 204.64091 * 18 17 15 31 31 H 1.09002 * 110.31397 * 82.47081 * 18 17 15 32 32 H 1.08992 * 109.83524 * 238.77923 * 20 19 18 33 33 H 1.08998 * 109.90237 * 117.84405 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 8 1.5505 -2.0778 1.2333 14 6 1.9914 -2.8130 2.3766 15 6 1.4447 -4.2404 2.3070 16 1 1.7533 -4.7274 1.3819 17 6 1.8906 -5.0640 3.5458 18 6 0.7319 -6.0872 3.6513 19 8 -0.4477 -5.3579 3.2771 20 6 -0.0929 -4.2472 2.4451 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1617 -3.4844 25 1 3.0262 -0.6501 1.2560 26 1 3.0808 -2.8419 2.3921 27 1 1.6279 -2.3281 3.2826 28 1 2.8414 -5.5648 3.3632 29 1 1.9435 -4.4372 4.4360 30 1 0.6419 -6.4529 4.6742 31 1 0.8968 -6.9178 2.9649 32 1 -0.4268 -3.3180 2.9065 33 1 -0.5519 -4.3579 1.4627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308142582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = -54.984111 kcal Electronic energy + Delta-G solvation = -14792.966972 eV Core-core repulsion = 12241.406522 eV Total energy + Delta-G solvation = -2551.560451 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.34412 -36.34873 -34.32463 -32.48442 -31.02032 -29.30459 -26.85884 -25.13084 -24.81228 -22.28201 -20.48439 -19.96770 -16.89358 -16.54926 -15.97388 -15.90087 -14.87647 -14.70640 -14.16226 -13.66801 -13.45141 -13.07137 -12.66916 -11.93740 -11.66748 -11.39898 -11.31996 -11.18250 -10.97497 -10.83275 -10.64551 -10.29489 -10.24110 -10.01575 -9.65606 -9.41862 -9.06415 -8.42746 -7.58669 -6.02782 -4.13435 3.28357 3.33191 3.36246 3.63643 3.97654 4.39530 4.52608 4.88462 4.94395 5.22170 5.25378 5.31106 5.53938 5.62256 5.69093 5.86277 5.91252 5.96706 6.11263 6.23854 6.34222 6.93118 7.05765 7.11079 7.17923 7.47660 7.68455 7.80655 8.05934 8.27542 8.41428 8.91166 9.52779 10.99527 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.006880 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.714724 B = 4068.673071 C = 4297.721328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.198 3.802 3 H 0.060 0.940 4 C -0.538 4.538 5 H 0.056 0.944 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.893 3.107 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.278 1.278 12 N -0.500 5.500 13 O -0.243 6.243 14 C 0.071 3.929 15 C -0.117 4.117 16 H 0.090 0.910 17 C -0.149 4.149 18 C 0.052 3.948 19 O -0.391 6.391 20 C 0.060 3.940 21 H 0.012 0.988 22 H 0.082 0.918 23 H 0.033 0.967 24 H 0.263 0.737 25 H 0.315 0.685 26 H 0.040 0.960 27 H 0.049 0.951 28 H 0.083 0.917 29 H 0.080 0.920 30 H 0.082 0.918 31 H 0.058 0.942 32 H 0.076 0.924 33 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.135 -9.172 10.083 13.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.090 3.910 3 H 0.077 0.923 4 C -0.577 4.577 5 H 0.074 0.926 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.721 3.279 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.204 1.204 12 N -0.170 5.170 13 O -0.249 6.249 14 C -0.008 4.008 15 C -0.137 4.137 16 H 0.108 0.892 17 C -0.186 4.186 18 C -0.024 4.024 19 O -0.310 6.310 20 C -0.016 4.016 21 H 0.032 0.968 22 H 0.101 0.899 23 H 0.052 0.948 24 H 0.073 0.927 25 H 0.127 0.873 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.101 0.899 29 H 0.099 0.901 30 H 0.100 0.900 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 1.169 -8.946 10.237 13.645 hybrid contribution 1.399 -0.728 -1.645 2.279 sum 2.568 -9.674 8.592 13.191 Atomic orbital electron populations 1.21618 0.96865 0.99809 0.99854 1.19556 0.93942 0.92888 0.84619 0.92287 1.21620 1.31944 1.12696 0.91441 0.92603 1.24926 0.94848 0.94890 0.99025 1.69862 1.36391 1.22756 1.23710 0.86640 0.79060 0.79902 0.82274 1.20296 1.21172 1.20380 1.67303 1.13981 0.92708 1.43010 1.90922 1.71523 1.20881 1.41608 1.22138 0.97334 0.89961 0.91325 1.22694 0.95929 0.95882 0.99197 0.89183 1.23254 0.99268 0.97804 0.98321 1.23315 0.84459 0.94446 1.00196 1.88379 1.30476 1.42598 1.69566 1.23172 0.93966 0.89415 0.95060 0.96846 0.89925 0.94794 0.92744 0.87286 0.94136 0.93321 0.89869 0.90105 0.89971 0.92370 0.90566 0.90919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.14 9.02 37.16 0.34 -2.80 16 2 C 0.20 5.05 3.15 -68.86 -0.22 4.84 16 3 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 4 C -0.54 -14.93 8.35 -34.44 -0.29 -15.21 16 5 H 0.06 1.57 7.75 -52.49 -0.41 1.16 16 6 C 0.07 1.82 5.30 -17.82 -0.09 1.73 16 7 N -0.89 -25.35 11.32 55.43 0.63 -24.72 16 8 Si 0.89 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.72 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.39 16 11 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 12 N -0.50 -11.00 7.11 -5.65 -0.04 -11.04 16 13 O -0.24 -5.21 9.82 -13.92 -0.14 -5.34 16 14 C 0.07 1.15 5.70 37.16 0.21 1.36 16 15 C -0.12 -1.65 3.29 -88.67 -0.29 -1.94 16 16 H 0.09 1.32 8.14 -51.93 -0.42 0.90 16 17 C -0.15 -1.60 6.62 -24.48 -0.16 -1.76 16 18 C 0.05 0.58 7.78 38.19 0.30 0.88 16 19 O -0.39 -5.82 11.36 -35.23 -0.40 -6.22 16 20 C 0.06 0.92 7.26 37.88 0.28 1.19 16 21 H 0.01 0.30 8.14 -51.93 -0.42 -0.13 16 22 H 0.08 2.25 6.07 -51.93 -0.32 1.94 16 23 H 0.03 0.87 7.64 -51.93 -0.40 0.47 16 24 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 25 H 0.31 6.33 8.99 -39.29 -0.35 5.98 16 26 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 27 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 28 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.82 8.04 -51.93 -0.42 0.40 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.08 1.21 7.76 -51.93 -0.40 0.81 16 33 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 LS Contribution 274.70 15.07 4.14 4.14 Total: -1.00 -29.72 274.70 -5.99 -35.71 By element: Atomic # 1 Polarization: 7.91 SS G_CDS: -5.23 Total: 2.68 kcal Atomic # 6 Polarization: -11.79 SS G_CDS: 0.07 Total: -11.72 kcal Atomic # 7 Polarization: -36.34 SS G_CDS: 0.59 Total: -35.76 kcal Atomic # 8 Polarization: -11.03 SS G_CDS: -0.54 Total: -11.56 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.72 -5.99 -35.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.270 kcal (2) G-P(sol) polarization free energy of solvation -29.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds