Wall clock time and date at job start Mon Mar 30 2020 03:25:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50701 * 109.47419 * 239.99925 * 2 1 3 5 5 H 1.07998 * 120.00129 * 240.00616 * 4 2 1 6 6 C 1.37880 * 119.99861 * 59.99898 * 4 2 1 7 7 N 1.31510 * 119.99913 * 0.02562 * 6 4 2 8 8 Si 1.86797 * 119.99734 * 180.02562 * 6 4 2 9 9 H 1.48506 * 109.47294 * 60.00559 * 8 6 4 10 10 H 1.48503 * 109.46954 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47431 * 300.00157 * 8 6 4 12 12 N 1.46901 * 109.46860 * 120.00150 * 2 1 3 13 13 O 1.46293 * 111.00419 * 59.99747 * 12 2 1 14 14 C 1.42896 * 114.00260 * 179.97438 * 13 12 2 15 15 C 1.53004 * 109.47144 * 180.02562 * 14 13 12 16 16 H 1.09001 * 110.75014 * 57.02174 * 15 14 13 17 17 C 1.55308 * 110.84594 * 180.71826 * 15 14 13 18 18 C 1.54947 * 100.94011 * 152.32701 * 17 15 14 19 19 O 1.43645 * 105.13613 * 323.55575 * 18 17 15 20 20 C 1.43236 * 109.97446 * 24.42515 * 19 18 17 21 21 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 22 22 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 23 23 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 24 24 H 0.97002 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00904 * 111.00313 * 183.95682 * 12 2 1 26 26 H 1.08994 * 109.47654 * 300.00735 * 14 13 12 27 27 H 1.09003 * 109.46980 * 60.00395 * 14 13 12 28 28 H 1.09000 * 111.12487 * 270.24047 * 17 15 14 29 29 H 1.08995 * 111.12742 * 34.40956 * 17 15 14 30 30 H 1.08998 * 110.31079 * 204.64091 * 18 17 15 31 31 H 1.09002 * 110.31397 * 82.47081 * 18 17 15 32 32 H 1.08992 * 109.83524 * 238.77923 * 20 19 18 33 33 H 1.08998 * 109.90237 * 117.84405 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6994 -0.2394 -2.4827 7 7 0.9437 0.8301 -2.6034 8 14 2.3215 -1.1204 -4.0079 9 1 1.8259 -2.5203 -4.0077 10 1 1.8271 -0.4199 -5.2204 11 1 3.8066 -1.1210 -4.0081 12 7 2.0196 -0.6925 1.1994 13 8 1.5505 -2.0778 1.2333 14 6 1.9914 -2.8130 2.3766 15 6 1.4447 -4.2404 2.3070 16 1 1.7533 -4.7274 1.3819 17 6 1.8906 -5.0640 3.5458 18 6 0.7319 -6.0872 3.6513 19 8 -0.4477 -5.3579 3.2771 20 6 -0.0929 -4.2472 2.4451 21 1 -0.3634 0.5139 0.8899 22 1 -0.3633 0.5138 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7096 1.1617 -3.4844 25 1 3.0262 -0.6501 1.2560 26 1 3.0808 -2.8419 2.3921 27 1 1.6279 -2.3281 3.2826 28 1 2.8414 -5.5648 3.3632 29 1 1.9435 -4.4372 4.4360 30 1 0.6419 -6.4529 4.6742 31 1 0.8968 -6.9178 2.9649 32 1 -0.4268 -3.3180 2.9065 33 1 -0.5519 -4.3579 1.4627 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308142582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:03 Heat of formation + Delta-G solvation = -75.213729 kcal Electronic energy + Delta-G solvation = -14793.844194 eV Core-core repulsion = 12241.406522 eV Total energy + Delta-G solvation = -2552.437673 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42643 -38.00562 -36.13390 -33.96688 -32.76960 -30.41030 -28.68995 -27.20191 -26.19898 -23.22448 -22.04449 -21.55210 -18.58999 -18.15010 -17.46892 -17.13947 -16.73196 -15.87613 -15.64573 -15.20042 -14.89806 -14.61786 -14.10913 -13.46605 -13.32008 -13.13005 -12.85632 -12.62689 -12.35554 -12.32444 -12.23571 -12.07492 -11.98381 -11.66816 -11.44709 -10.87751 -10.54771 -10.50904 -9.39321 -8.12418 -6.31458 1.37500 1.39315 1.46871 2.08974 2.38643 2.94703 3.11619 3.48433 3.78879 3.91464 4.21630 4.31296 4.38741 4.52477 4.62132 4.69413 4.79842 4.87037 4.91280 4.94446 5.00068 5.09374 5.18324 5.24286 5.45506 5.64277 5.84935 5.95641 6.02447 6.23329 6.68145 6.79560 7.37849 8.87530 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.038734 B = 0.006880 C = 0.006514 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 722.714724 B = 4068.673071 C = 4297.721328 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.199 3.801 3 H 0.043 0.957 4 C -0.553 4.553 5 H 0.047 0.953 6 C 0.019 3.981 7 N -0.912 5.912 8 Si 0.955 3.045 9 H -0.279 1.279 10 H -0.280 1.280 11 H -0.270 1.270 12 N -0.494 5.494 13 O -0.267 6.267 14 C 0.067 3.933 15 C -0.115 4.115 16 H 0.083 0.917 17 C -0.135 4.135 18 C 0.044 3.956 19 O -0.410 6.410 20 C 0.061 3.939 21 H 0.028 0.972 22 H 0.061 0.939 23 H 0.021 0.979 24 H 0.265 0.735 25 H 0.325 0.675 26 H 0.058 0.942 27 H 0.056 0.944 28 H 0.108 0.892 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.068 0.932 32 H 0.065 0.935 33 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.182 -10.471 10.715 15.316 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 H 0.061 0.939 4 C -0.592 4.592 5 H 0.066 0.934 6 C -0.181 4.181 7 N -0.551 5.551 8 Si 0.780 3.220 9 H -0.204 1.204 10 H -0.205 1.205 11 H -0.195 1.195 12 N -0.164 5.164 13 O -0.275 6.275 14 C -0.011 4.011 15 C -0.135 4.135 16 H 0.101 0.899 17 C -0.173 4.173 18 C -0.031 4.031 19 O -0.330 6.330 20 C -0.015 4.015 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.041 0.959 24 H 0.074 0.926 25 H 0.139 0.861 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.126 0.874 29 H 0.109 0.891 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.083 0.917 33 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 2.234 -10.245 10.890 15.118 hybrid contribution 1.066 -0.385 -1.749 2.084 sum 3.301 -10.630 9.142 14.404 Atomic orbital electron populations 1.21436 0.97027 0.98826 0.99559 1.19357 0.93794 0.92485 0.85352 0.93914 1.21835 1.32112 1.12601 0.92658 0.93423 1.25664 0.95041 0.95594 1.01794 1.69969 1.37017 1.23721 1.24397 0.85672 0.78854 0.78523 0.78928 1.20428 1.20484 1.19485 1.67094 1.14697 0.93919 1.40644 1.90892 1.72196 1.20164 1.44242 1.22406 0.98492 0.90323 0.89852 1.22689 0.95037 0.95036 1.00779 0.89870 1.23254 1.00135 0.97182 0.96729 1.23611 0.83281 0.94403 1.01855 1.88358 1.32597 1.42637 1.69403 1.23043 0.94874 0.89387 0.94221 0.95257 0.91984 0.95941 0.92607 0.86138 0.92407 0.92616 0.87400 0.89117 0.87549 0.91373 0.91651 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.66 9.02 71.98 0.65 -5.01 16 2 C 0.20 10.23 3.15 44.17 0.14 10.37 16 3 H 0.04 2.34 8.14 -2.39 -0.02 2.32 16 4 C -0.55 -30.75 8.35 25.60 0.21 -30.53 16 5 H 0.05 2.67 7.75 -2.91 -0.02 2.65 16 6 C 0.02 1.06 5.30 84.66 0.45 1.51 16 7 N -0.91 -52.25 11.32 21.45 0.24 -52.01 16 8 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 9 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 10 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 11 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 12 N -0.49 -21.52 7.11 -171.79 -1.22 -22.74 16 13 O -0.27 -11.29 9.82 -50.14 -0.49 -11.78 16 14 C 0.07 2.06 5.70 71.98 0.41 2.47 16 15 C -0.12 -3.08 3.29 -9.53 -0.03 -3.11 16 16 H 0.08 2.34 8.14 -2.39 -0.02 2.32 16 17 C -0.14 -2.49 6.62 32.05 0.21 -2.27 16 18 C 0.04 0.86 7.78 72.65 0.56 1.43 16 19 O -0.41 -11.73 11.36 -148.98 -1.69 -13.42 16 20 C 0.06 1.86 7.26 72.45 0.53 2.38 16 21 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 22 H 0.06 3.43 6.07 -2.39 -0.01 3.42 16 23 H 0.02 1.15 7.64 -2.39 -0.02 1.13 16 24 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 25 H 0.32 12.83 8.99 -89.69 -0.81 12.02 16 26 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 27 H 0.06 1.63 8.07 -2.39 -0.02 1.61 16 28 H 0.11 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 1.52 8.04 -2.39 -0.02 1.50 16 30 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 2.09 7.76 -2.39 -0.02 2.07 16 33 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -62.63 274.70 2.27 -60.35 By element: Atomic # 1 Polarization: 16.16 SS G_CDS: 0.28 Total: 16.43 kcal Atomic # 6 Polarization: -25.90 SS G_CDS: 3.13 Total: -22.77 kcal Atomic # 7 Polarization: -73.77 SS G_CDS: -0.98 Total: -74.75 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -2.18 Total: -25.21 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -62.63 2.27 -60.35 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.860 kcal (2) G-P(sol) polarization free energy of solvation -62.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds