Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 13 13 O 1.46298 * 111.00191 * 90.00270 * 12 2 1 14 14 C 1.42898 * 113.99869 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.46925 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43359 * 303.90550 * 15 14 13 17 17 C 1.54809 * 110.48772 * 181.21701 * 15 14 13 18 18 C 1.54994 * 102.09324 * 220.43993 * 17 15 14 19 19 O 1.44380 * 103.48964 * 37.02808 * 18 17 15 20 20 C 1.43743 * 106.97359 * 319.93628 * 19 18 17 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00317 * 326.04050 * 12 2 1 26 26 H 1.08998 * 109.47064 * 299.99469 * 14 13 12 27 27 H 1.08996 * 109.47425 * 60.00046 * 14 13 12 28 28 H 1.09002 * 110.91041 * 338.64531 * 17 15 14 29 29 H 1.09005 * 110.90326 * 102.24211 * 17 15 14 30 30 H 1.08992 * 110.61923 * 278.52458 * 18 17 15 31 31 H 1.09004 * 110.75064 * 155.58966 * 18 17 15 32 32 H 1.08997 * 109.88411 * 267.08990 * 20 19 18 33 33 H 1.09004 * 110.00617 * 146.00388 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 8 2.1944 0.2432 -2.3105 14 6 2.6705 -0.3647 -3.5129 15 6 2.8145 0.7014 -4.6009 16 1 1.8688 1.2221 -4.7510 17 6 3.3006 0.0625 -5.9246 18 6 4.3163 1.1142 -6.4390 19 8 4.9546 1.5843 -5.2323 20 6 3.9281 1.7009 -4.2327 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9042 -0.5275 4.4376 25 1 1.4035 -1.4488 -1.4572 26 1 3.6396 -0.8277 -3.3269 27 1 1.9617 -1.1248 -3.8411 28 1 3.7907 -0.8932 -5.7383 29 1 2.4744 -0.0559 -6.6257 30 1 3.8006 1.9310 -6.9437 31 1 5.0461 0.6530 -7.1045 32 1 3.5290 2.7151 -4.2278 33 1 4.3344 1.4578 -3.2509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308142583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -46.065349 kcal Electronic energy + Delta-G solvation = -14593.952214 eV Core-core repulsion = 12042.778510 eV Total energy + Delta-G solvation = -2551.173704 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.47643 -36.62605 -34.64243 -32.61034 -31.54074 -29.47378 -27.31793 -25.19634 -24.97043 -22.52314 -20.65938 -20.19542 -17.26022 -16.70756 -16.19073 -15.78933 -15.14016 -14.84379 -14.52192 -14.07734 -13.44476 -12.95669 -12.83040 -12.32839 -12.27000 -11.90745 -11.70280 -11.39379 -11.25670 -11.11257 -10.76422 -10.58678 -10.19951 -9.93529 -9.63766 -9.61025 -9.23058 -8.64960 -7.74781 -6.12873 -4.12716 3.22264 3.34445 3.35866 3.36734 3.90719 4.34453 4.46510 4.75893 4.80007 5.10645 5.13937 5.17479 5.41757 5.50833 5.57183 5.73337 5.77548 5.79167 5.93865 6.03869 6.16604 6.17586 6.20434 6.42151 6.70527 6.83749 7.06123 7.49705 7.63103 8.10547 8.51610 8.95007 9.46656 10.99786 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055076 B = 0.005877 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.268330 B = 4763.231318 C = 4793.235135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.176 3.824 3 H 0.051 0.949 4 C -0.502 4.502 5 H 0.084 0.916 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.886 3.114 9 H -0.279 1.279 10 H -0.294 1.294 11 H -0.267 1.267 12 N -0.478 5.478 13 O -0.274 6.274 14 C 0.073 3.927 15 C -0.119 4.119 16 H 0.086 0.914 17 C -0.147 4.147 18 C 0.046 3.954 19 O -0.381 6.381 20 C 0.053 3.947 21 H 0.049 0.951 22 H 0.031 0.969 23 H 0.055 0.945 24 H 0.266 0.734 25 H 0.321 0.679 26 H 0.057 0.943 27 H 0.042 0.958 28 H 0.081 0.919 29 H 0.081 0.919 30 H 0.058 0.942 31 H 0.091 0.909 32 H 0.058 0.942 33 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.686 2.774 -17.597 17.828 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C 0.067 3.933 3 H 0.069 0.931 4 C -0.540 4.540 5 H 0.102 0.898 6 C -0.128 4.128 7 N -0.533 5.533 8 Si 0.716 3.284 9 H -0.206 1.206 10 H -0.221 1.221 11 H -0.192 1.192 12 N -0.150 5.150 13 O -0.280 6.280 14 C -0.005 4.005 15 C -0.139 4.139 16 H 0.105 0.895 17 C -0.185 4.185 18 C -0.030 4.030 19 O -0.300 6.300 20 C -0.024 4.024 21 H 0.067 0.933 22 H 0.050 0.950 23 H 0.074 0.926 24 H 0.076 0.924 25 H 0.136 0.864 26 H 0.075 0.925 27 H 0.061 0.939 28 H 0.100 0.900 29 H 0.099 0.901 30 H 0.076 0.924 31 H 0.109 0.891 32 H 0.076 0.924 33 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.182 3.091 -17.163 17.440 hybrid contribution -2.012 0.642 -0.045 2.112 sum -1.830 3.733 -17.208 17.703 Atomic orbital electron populations 1.22890 1.00773 1.01043 0.99505 1.19958 0.89282 0.97010 0.87040 0.93123 1.20680 1.32243 1.14125 0.86976 0.89759 1.24832 0.95850 0.96647 0.95518 1.69857 1.45315 1.40214 0.97909 0.86875 0.80456 0.83813 0.77230 1.20584 1.22111 1.19196 1.67204 1.52098 1.02838 0.92810 1.90737 1.87931 1.29401 1.19901 1.22249 0.99033 0.94465 0.84795 1.22548 1.00074 0.97007 0.94239 0.89523 1.23138 0.99515 0.99910 0.95956 1.23514 0.95384 0.95552 0.88587 1.88880 1.32260 1.87798 1.21029 1.23252 0.87934 0.98050 0.93154 0.93257 0.94967 0.92630 0.92365 0.86410 0.92455 0.93935 0.90006 0.90083 0.92389 0.89055 0.92401 0.88466 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.01 8.69 37.16 0.32 -3.68 16 2 C 0.18 4.29 2.52 -68.86 -0.17 4.12 16 3 H 0.05 1.32 7.10 -51.93 -0.37 0.95 16 4 C -0.50 -14.17 9.42 -34.44 -0.32 -14.50 16 5 H 0.08 2.59 8.06 -52.49 -0.42 2.17 16 6 C 0.07 2.12 5.45 -17.82 -0.10 2.03 16 7 N -0.90 -27.16 13.96 55.43 0.77 -26.39 16 8 Si 0.89 21.84 24.37 -169.99 -4.14 17.69 16 9 H -0.28 -6.64 6.87 56.52 0.39 -6.25 16 10 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 11 H -0.27 -6.41 6.53 56.52 0.37 -6.04 16 12 N -0.48 -10.28 7.08 -5.65 -0.04 -10.32 16 13 O -0.27 -5.33 10.97 -13.92 -0.15 -5.48 16 14 C 0.07 1.08 5.49 37.16 0.20 1.29 16 15 C -0.12 -1.47 3.34 -89.09 -0.30 -1.76 16 16 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 17 C -0.15 -1.41 6.71 -24.73 -0.17 -1.58 16 18 C 0.05 0.46 7.72 38.21 0.29 0.75 16 19 O -0.38 -5.28 11.52 -35.23 -0.41 -5.68 16 20 C 0.05 0.72 7.23 37.73 0.27 1.00 16 21 H 0.05 1.12 3.27 -51.93 -0.17 0.95 16 22 H 0.03 0.63 8.14 -51.93 -0.42 0.20 16 23 H 0.05 1.14 8.12 -51.93 -0.42 0.72 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.32 6.18 8.57 -39.29 -0.34 5.84 16 26 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 27 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.78 7.87 -51.93 -0.41 0.37 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.09 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.10 1.51 7.60 -51.93 -0.39 1.12 16 LS Contribution 269.00 15.07 4.05 4.05 Total: -1.00 -30.96 269.00 -4.96 -35.92 By element: Atomic # 1 Polarization: 7.62 SS G_CDS: -5.09 Total: 2.54 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: 0.04 Total: -12.34 kcal Atomic # 7 Polarization: -37.43 SS G_CDS: 0.73 Total: -36.70 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.56 Total: -11.16 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -4.14 Total: 17.69 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -30.96 -4.96 -35.92 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.143 kcal (2) G-P(sol) polarization free energy of solvation -30.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.964 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.065 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds