Wall clock time and date at job start Mon Mar 30 2020 03:25:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 5 5 H 1.07994 * 120.00496 * 120.00058 * 4 2 1 6 6 C 1.37887 * 119.99690 * 299.99759 * 4 2 1 7 7 N 1.31515 * 119.99477 * 180.02562 * 6 4 2 8 8 Si 1.86789 * 119.99942 * 359.97438 * 6 4 2 9 9 H 1.48505 * 109.47181 * 90.00449 * 8 6 4 10 10 H 1.48500 * 109.47253 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47537 * 330.00117 * 8 6 4 12 12 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 13 13 O 1.46298 * 111.00191 * 90.00270 * 12 2 1 14 14 C 1.42898 * 113.99869 * 179.97438 * 13 12 2 15 15 C 1.53006 * 109.46925 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43359 * 303.90550 * 15 14 13 17 17 C 1.54809 * 110.48772 * 181.21701 * 15 14 13 18 18 C 1.54994 * 102.09324 * 220.43993 * 17 15 14 19 19 O 1.44380 * 103.48964 * 37.02808 * 18 17 15 20 20 C 1.43743 * 106.97359 * 319.93628 * 19 18 17 21 21 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 22 22 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 23 23 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 24 24 H 0.97006 * 119.99768 * 179.97438 * 7 6 4 25 25 H 1.00896 * 111.00317 * 326.04050 * 12 2 1 26 26 H 1.08998 * 109.47064 * 299.99469 * 14 13 12 27 27 H 1.08996 * 109.47425 * 60.00046 * 14 13 12 28 28 H 1.09002 * 110.91041 * 338.64531 * 17 15 14 29 29 H 1.09005 * 110.90326 * 102.24211 * 17 15 14 30 30 H 1.08992 * 110.61923 * 278.52458 * 18 17 15 31 31 H 1.09004 * 110.75064 * 155.58966 * 18 17 15 32 32 H 1.08997 * 109.88411 * 267.08990 * 20 19 18 33 33 H 1.09004 * 110.00617 * 146.00388 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1382 -0.8591 3.5565 8 14 0.6261 1.2798 2.6541 9 1 -0.8019 0.8745 2.6994 10 1 0.9774 1.9953 3.9071 11 1 0.8493 2.1773 1.4923 12 7 2.0196 -0.6925 -1.1995 13 8 2.1944 0.2432 -2.3105 14 6 2.6705 -0.3647 -3.5129 15 6 2.8145 0.7014 -4.6009 16 1 1.8688 1.2221 -4.7510 17 6 3.3006 0.0625 -5.9246 18 6 4.3163 1.1142 -6.4390 19 8 4.9546 1.5843 -5.2323 20 6 3.9281 1.7009 -4.2327 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.9042 -0.5275 4.4376 25 1 1.4035 -1.4488 -1.4572 26 1 3.6396 -0.8277 -3.3269 27 1 1.9617 -1.1248 -3.8411 28 1 3.7907 -0.8932 -5.7383 29 1 2.4744 -0.0559 -6.6257 30 1 3.8006 1.9310 -6.9437 31 1 5.0461 0.6530 -7.1045 32 1 3.5290 2.7151 -4.2278 33 1 4.3344 1.4578 -3.2509 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308142583.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:05 Heat of formation + Delta-G solvation = -69.432784 kcal Electronic energy + Delta-G solvation = -14594.965502 eV Core-core repulsion = 12042.778510 eV Total energy + Delta-G solvation = -2552.186992 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -40.44531 -38.19540 -36.34781 -34.15114 -33.21465 -30.46501 -28.93471 -27.19305 -26.25172 -23.36563 -22.39905 -21.41412 -19.14551 -17.89607 -17.55828 -17.14533 -16.79823 -16.02106 -15.84963 -15.50525 -15.06667 -14.60922 -14.17255 -14.10837 -13.69968 -13.21212 -13.02462 -12.80575 -12.51961 -12.39302 -12.15975 -12.07056 -11.65615 -11.56693 -11.40485 -11.12347 -10.80354 -10.62282 -9.41840 -8.33570 -6.38961 1.28108 1.35824 1.45397 1.88508 2.28363 2.99926 3.01994 3.53217 3.75904 3.86920 4.19307 4.26846 4.34927 4.40181 4.40490 4.47522 4.58192 4.64625 4.72089 4.82564 4.86506 4.89698 4.98756 5.06889 5.18613 5.29174 5.54259 5.73168 5.92828 6.38194 6.55717 6.66977 7.24975 8.82956 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.055076 B = 0.005877 C = 0.005840 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 508.268330 B = 4763.231318 C = 4793.235135 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C 0.181 3.819 3 H 0.035 0.965 4 C -0.510 4.510 5 H 0.042 0.958 6 C 0.020 3.980 7 N -0.942 5.942 8 Si 0.951 3.049 9 H -0.260 1.260 10 H -0.294 1.294 11 H -0.255 1.255 12 N -0.494 5.494 13 O -0.280 6.280 14 C 0.067 3.933 15 C -0.113 4.113 16 H 0.098 0.902 17 C -0.138 4.138 18 C 0.040 3.960 19 O -0.406 6.406 20 C 0.051 3.949 21 H 0.043 0.957 22 H 0.058 0.942 23 H 0.064 0.936 24 H 0.270 0.730 25 H 0.334 0.666 26 H 0.045 0.955 27 H 0.064 0.936 28 H 0.081 0.919 29 H 0.110 0.890 30 H 0.074 0.926 31 H 0.110 0.890 32 H 0.064 0.936 33 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.283 3.722 -19.814 20.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C 0.071 3.929 3 H 0.052 0.948 4 C -0.549 4.549 5 H 0.060 0.940 6 C -0.179 4.179 7 N -0.582 5.582 8 Si 0.778 3.222 9 H -0.185 1.185 10 H -0.221 1.221 11 H -0.180 1.180 12 N -0.165 5.165 13 O -0.288 6.288 14 C -0.011 4.011 15 C -0.133 4.133 16 H 0.116 0.884 17 C -0.176 4.176 18 C -0.036 4.036 19 O -0.326 6.326 20 C -0.026 4.026 21 H 0.061 0.939 22 H 0.077 0.923 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.150 0.850 26 H 0.064 0.936 27 H 0.083 0.917 28 H 0.100 0.900 29 H 0.128 0.872 30 H 0.093 0.907 31 H 0.128 0.872 32 H 0.082 0.918 33 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.422 4.014 -19.404 19.865 hybrid contribution -1.386 0.272 0.515 1.503 sum -2.808 4.286 -18.889 19.571 Atomic orbital electron populations 1.22738 0.98261 1.02010 1.00427 1.19637 0.91056 0.95418 0.86743 0.94752 1.20892 1.31607 1.13096 0.89292 0.93984 1.25683 0.97295 0.99912 0.94983 1.70002 1.47182 1.42341 0.98650 0.85822 0.79299 0.79758 0.77368 1.18532 1.22102 1.17989 1.66905 1.52539 1.03496 0.93594 1.90709 1.88301 1.29217 1.20530 1.22536 0.98837 0.95938 0.83765 1.22561 1.00098 0.96160 0.94518 0.88362 1.23151 1.00280 0.99471 0.94687 1.23802 0.96036 0.96281 0.87490 1.88853 1.33157 1.88190 1.22407 1.23181 0.88332 0.98872 0.92196 0.93883 0.92285 0.91747 0.92100 0.84997 0.93630 0.91745 0.90001 0.87203 0.90745 0.87212 0.91802 0.91369 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.24 8.69 71.98 0.63 -6.61 16 2 C 0.18 8.72 2.52 44.17 0.11 8.83 16 3 H 0.03 1.77 7.10 -2.39 -0.02 1.75 16 4 C -0.51 -29.46 9.42 25.60 0.24 -29.22 16 5 H 0.04 2.71 8.06 -2.91 -0.02 2.68 16 6 C 0.02 1.13 5.45 84.66 0.46 1.59 16 7 N -0.94 -58.51 13.96 21.45 0.30 -58.21 16 8 Si 0.95 44.62 24.37 68.60 1.67 46.29 16 9 H -0.26 -11.33 6.87 99.48 0.68 -10.65 16 10 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 11 H -0.26 -11.44 6.53 99.48 0.65 -10.79 16 12 N -0.49 -21.03 7.08 -171.79 -1.22 -22.25 16 13 O -0.28 -10.54 10.97 -50.15 -0.55 -11.09 16 14 C 0.07 1.88 5.49 71.98 0.39 2.27 16 15 C -0.11 -2.54 3.34 -9.80 -0.03 -2.58 16 16 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 17 C -0.14 -2.20 6.71 31.89 0.21 -1.99 16 18 C 0.04 0.68 7.72 72.66 0.56 1.24 16 19 O -0.41 -10.80 11.52 -148.98 -1.72 -12.51 16 20 C 0.05 1.36 7.23 72.36 0.52 1.88 16 21 H 0.04 1.82 3.27 -2.39 -0.01 1.81 16 22 H 0.06 2.10 8.14 -2.39 -0.02 2.09 16 23 H 0.06 2.50 8.12 -2.39 -0.02 2.49 16 24 H 0.27 15.59 8.31 -92.70 -0.77 14.82 16 25 H 0.33 12.51 8.57 -89.70 -0.77 11.74 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 28 H 0.08 1.32 7.87 -2.39 -0.02 1.30 16 29 H 0.11 1.16 8.14 -2.38 -0.02 1.14 16 30 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 31 H 0.11 1.45 8.14 -2.39 -0.02 1.43 16 32 H 0.06 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.07 2.18 7.60 -2.39 -0.02 2.16 16 Total: -1.00 -67.71 269.00 1.83 -65.88 By element: Atomic # 1 Polarization: 16.24 SS G_CDS: 0.24 Total: 16.48 kcal Atomic # 6 Polarization: -27.68 SS G_CDS: 3.10 Total: -24.58 kcal Atomic # 7 Polarization: -79.54 SS G_CDS: -0.92 Total: -80.46 kcal Atomic # 8 Polarization: -21.34 SS G_CDS: -2.27 Total: -23.61 kcal Atomic # 14 Polarization: 44.62 SS G_CDS: 1.67 Total: 46.29 kcal Total: -67.71 1.83 -65.88 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142583.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.554 kcal (2) G-P(sol) polarization free energy of solvation -67.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.262 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds