Wall clock time and date at job start Mon Mar 30 2020 03:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 O 1.46300 * 110.99738 * 300.00175 * 12 2 1 14 14 C 1.42897 * 113.99796 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47098 * 179.97438 * 14 13 12 16 16 H 1.09004 * 110.75399 * 57.01791 * 15 14 13 17 17 C 1.55307 * 110.85008 * 180.70948 * 15 14 13 18 18 C 1.54943 * 100.94275 * 152.32483 * 17 15 14 19 19 O 1.43650 * 105.13495 * 323.55659 * 18 17 15 20 20 C 1.43230 * 109.97081 * 24.42583 * 19 18 17 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.00903 * 111.00185 * 176.04762 * 12 2 1 26 26 H 1.09001 * 109.47071 * 299.99508 * 14 13 12 27 27 H 1.09000 * 109.47451 * 59.99471 * 14 13 12 28 28 H 1.09003 * 111.12574 * 270.24461 * 17 15 14 29 29 H 1.09007 * 111.12159 * 34.40788 * 17 15 14 30 30 H 1.09005 * 110.31118 * 204.64464 * 18 17 15 31 31 H 1.08992 * 110.31339 * 82.47502 * 18 17 15 32 32 H 1.09003 * 109.83701 * 238.77363 * 20 19 18 33 33 H 1.09003 * 109.90253 * 117.84357 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0196 -0.6924 -1.1995 13 8 1.5505 -2.0777 -1.2334 14 6 1.9913 -2.8128 -2.3768 15 6 1.4447 -4.2402 -2.3073 16 1 0.3569 -4.2342 -2.2376 17 6 1.9201 -5.0742 -3.5281 18 6 1.9109 -6.5033 -2.9295 19 8 2.3420 -6.3427 -1.5686 20 6 2.0670 -5.0097 -1.1225 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 3.0262 -0.6500 -1.2560 26 1 1.6278 -2.3279 -3.2828 27 1 3.0808 -2.8417 -2.3923 28 1 1.2181 -4.9913 -4.3578 29 1 2.9247 -4.7834 -3.8352 30 1 2.6043 -7.1455 -3.4727 31 1 0.9043 -6.9202 -2.9608 32 1 2.9928 -4.5252 -0.8122 33 1 1.3654 -5.0349 -0.2886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308142584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:07 Heat of formation + Delta-G solvation = -54.969623 kcal Electronic energy + Delta-G solvation = -14833.493070 eV Core-core repulsion = 12281.933247 eV Total energy + Delta-G solvation = -2551.559822 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.34810 -36.34807 -34.32569 -32.48344 -31.01816 -29.30029 -26.87822 -25.10834 -24.81416 -22.28695 -20.49879 -19.96933 -16.83283 -16.50901 -16.06868 -15.90199 -14.88614 -14.67434 -14.31918 -13.69244 -13.14324 -12.96446 -12.71974 -12.28428 -11.60586 -11.38832 -11.33194 -11.06777 -10.95621 -10.85879 -10.63359 -10.28912 -10.24197 -10.00340 -9.66427 -9.42080 -9.05475 -8.42859 -7.58477 -6.02677 -4.13171 3.27087 3.35416 3.40356 3.63612 3.97774 4.40532 4.52380 4.88740 4.93892 5.23168 5.25770 5.30283 5.51598 5.62070 5.68156 5.84843 5.92523 6.04570 6.07166 6.22585 6.33826 6.92347 7.05757 7.10416 7.17643 7.47539 7.68771 7.80368 8.05956 8.27615 8.41236 8.92100 9.53420 10.99666 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.007729 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.476730 B = 3621.884718 C = 4234.101613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.197 3.803 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.892 3.108 9 H -0.274 1.274 10 H -0.284 1.284 11 H -0.283 1.283 12 N -0.500 5.500 13 O -0.243 6.243 14 C 0.071 3.929 15 C -0.116 4.116 16 H 0.092 0.908 17 C -0.148 4.148 18 C 0.052 3.948 19 O -0.390 6.390 20 C 0.059 3.941 21 H 0.033 0.967 22 H 0.083 0.917 23 H 0.012 0.988 24 H 0.261 0.739 25 H 0.315 0.685 26 H 0.049 0.951 27 H 0.040 0.960 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.059 0.941 32 H 0.073 0.927 33 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.624 -9.022 -10.432 13.887 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.089 3.911 3 H 0.077 0.923 4 C -0.575 4.575 5 H 0.076 0.924 6 C -0.137 4.137 7 N -0.528 5.528 8 Si 0.720 3.280 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.209 1.209 12 N -0.170 5.170 13 O -0.249 6.249 14 C -0.007 4.007 15 C -0.136 4.136 16 H 0.110 0.890 17 C -0.186 4.186 18 C -0.025 4.025 19 O -0.310 6.310 20 C -0.017 4.017 21 H 0.052 0.948 22 H 0.101 0.899 23 H 0.031 0.969 24 H 0.071 0.929 25 H 0.127 0.873 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.102 0.898 29 H 0.098 0.902 30 H 0.100 0.900 31 H 0.077 0.923 32 H 0.091 0.909 33 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.970 -8.912 -10.404 13.733 hybrid contribution 0.922 -0.549 1.379 1.747 sum 1.891 -9.461 -9.025 13.211 Atomic orbital electron populations 1.21620 0.96905 0.99778 0.99847 1.19567 0.93920 0.92916 0.84680 0.92279 1.21700 1.31691 1.12737 0.91384 0.92425 1.24925 0.94835 0.94891 0.99060 1.69879 1.36495 1.22921 1.23491 0.86537 0.78694 0.79752 0.83032 1.19837 1.20989 1.20923 1.67303 1.14004 0.92708 1.42999 1.90922 1.71563 1.20865 1.41594 1.22137 0.97208 0.90006 0.91398 1.22690 1.01927 0.94392 0.94589 0.88996 1.23253 1.02653 0.94809 0.97901 1.23323 0.99663 0.96557 0.82919 1.88385 1.83731 1.31082 1.27802 1.23185 1.00637 0.81332 0.96593 0.94829 0.89884 0.96892 0.92870 0.87261 0.93246 0.94213 0.89752 0.90200 0.89992 0.92322 0.90882 0.90816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.13 9.02 37.16 0.34 -2.80 16 2 C 0.20 5.03 3.15 -68.86 -0.22 4.81 16 3 H 0.06 1.59 8.14 -51.93 -0.42 1.16 16 4 C -0.54 -14.88 8.35 -34.44 -0.29 -15.17 16 5 H 0.06 1.63 7.75 -52.49 -0.41 1.22 16 6 C 0.06 1.81 5.30 -17.82 -0.09 1.72 16 7 N -0.89 -25.39 11.31 55.43 0.63 -24.76 16 8 Si 0.89 21.64 29.54 -169.99 -5.02 16.62 16 9 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 10 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 12 N -0.50 -11.00 7.11 -5.65 -0.04 -11.04 16 13 O -0.24 -5.21 9.82 -13.92 -0.14 -5.34 16 14 C 0.07 1.15 5.70 37.16 0.21 1.36 16 15 C -0.12 -1.63 3.29 -88.67 -0.29 -1.93 16 16 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 17 C -0.15 -1.59 6.62 -24.48 -0.16 -1.75 16 18 C 0.05 0.58 7.78 38.18 0.30 0.88 16 19 O -0.39 -5.96 11.36 -35.23 -0.40 -6.36 16 20 C 0.06 0.92 7.26 37.88 0.27 1.20 16 21 H 0.03 0.86 7.64 -51.93 -0.40 0.46 16 22 H 0.08 2.26 6.06 -51.93 -0.31 1.95 16 23 H 0.01 0.29 8.14 -51.93 -0.42 -0.14 16 24 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 25 H 0.31 6.35 8.99 -39.29 -0.35 6.00 16 26 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 27 H 0.04 0.60 8.07 -51.93 -0.42 0.19 16 28 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.81 8.04 -51.92 -0.42 0.40 16 30 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 32 H 0.07 1.21 7.76 -51.93 -0.40 0.81 16 33 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -29.83 274.68 -5.99 -35.83 By element: Atomic # 1 Polarization: 7.82 SS G_CDS: -5.23 Total: 2.59 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: 0.07 Total: -11.67 kcal Atomic # 7 Polarization: -36.39 SS G_CDS: 0.59 Total: -35.80 kcal Atomic # 8 Polarization: -11.17 SS G_CDS: -0.54 Total: -11.70 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -29.83 -5.99 -35.83 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.141 kcal (2) G-P(sol) polarization free energy of solvation -29.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.976 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.828 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds