Wall clock time and date at job start Mon Mar 30 2020 03:25:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09007 * 109.47427 * 2 1 4 4 C 1.50701 * 109.47419 * 120.00339 * 2 1 3 5 5 H 1.08002 * 119.99761 * 119.99343 * 4 2 1 6 6 C 1.37871 * 119.99694 * 300.27906 * 4 2 1 7 7 N 1.31514 * 120.00482 * 359.71466 * 6 4 2 8 8 Si 1.86801 * 119.99746 * 179.72062 * 6 4 2 9 9 H 1.48494 * 109.47230 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47301 * 119.99669 * 8 6 4 11 11 H 1.48498 * 109.47430 * 239.99516 * 8 6 4 12 12 N 1.46904 * 109.47027 * 240.00552 * 2 1 3 13 13 O 1.46300 * 110.99738 * 300.00175 * 12 2 1 14 14 C 1.42897 * 113.99796 * 180.02562 * 13 12 2 15 15 C 1.53001 * 109.47098 * 179.97438 * 14 13 12 16 16 H 1.09004 * 110.75399 * 57.01791 * 15 14 13 17 17 C 1.55307 * 110.85008 * 180.70948 * 15 14 13 18 18 C 1.54943 * 100.94275 * 152.32483 * 17 15 14 19 19 O 1.43650 * 105.13495 * 323.55659 * 18 17 15 20 20 C 1.43230 * 109.97081 * 24.42583 * 19 18 17 21 21 H 1.08998 * 109.47156 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46783 * 299.99852 * 1 2 3 23 23 H 1.09005 * 109.46870 * 59.99511 * 1 2 3 24 24 H 0.96995 * 120.00207 * 179.97438 * 7 6 4 25 25 H 1.00903 * 111.00185 * 176.04762 * 12 2 1 26 26 H 1.09001 * 109.47071 * 299.99508 * 14 13 12 27 27 H 1.09000 * 109.47451 * 59.99471 * 14 13 12 28 28 H 1.09003 * 111.12574 * 270.24461 * 17 15 14 29 29 H 1.09007 * 111.12159 * 34.40788 * 17 15 14 30 30 H 1.09005 * 110.31118 * 204.64464 * 18 17 15 31 31 H 1.08992 * 110.31339 * 82.47502 * 18 17 15 32 32 H 1.09003 * 109.83701 * 238.77363 * 20 19 18 33 33 H 1.09003 * 109.90253 * 117.84357 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6532 -1.5886 1.1312 6 6 1.6946 -0.2428 2.4826 7 7 0.9386 0.8265 2.6034 8 14 2.3109 -1.1280 4.0077 9 1 3.1365 -2.2943 3.6035 10 1 3.1332 -0.1974 4.8220 11 1 1.1526 -1.5965 4.8103 12 7 2.0196 -0.6924 -1.1995 13 8 1.5505 -2.0777 -1.2334 14 6 1.9913 -2.8128 -2.3768 15 6 1.4447 -4.2402 -2.3073 16 1 0.3569 -4.2342 -2.2376 17 6 1.9201 -5.0742 -3.5281 18 6 1.9109 -6.5033 -2.9295 19 8 2.3420 -6.3427 -1.5686 20 6 2.0670 -5.0097 -1.1225 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 0.7006 1.1552 3.4844 25 1 3.0262 -0.6500 -1.2560 26 1 1.6278 -2.3279 -3.2828 27 1 3.0808 -2.8417 -2.3923 28 1 1.2181 -4.9913 -4.3578 29 1 2.9247 -4.7834 -3.8352 30 1 2.6043 -7.1455 -3.4727 31 1 0.9043 -6.9202 -2.9608 32 1 2.9928 -4.5252 -0.8122 33 1 1.3654 -5.0349 -0.2886 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308142584.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:07 Heat of formation + Delta-G solvation = -75.334304 kcal Electronic energy + Delta-G solvation = -14834.376149 eV Core-core repulsion = 12281.933247 eV Total energy + Delta-G solvation = -2552.442901 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.44580 -38.00695 -36.13989 -33.97355 -32.77320 -30.41444 -28.70818 -27.20190 -26.19765 -23.23799 -22.05056 -21.56817 -18.61481 -17.89130 -17.73359 -17.15827 -16.73825 -15.90774 -15.60439 -15.41110 -14.71494 -14.41585 -14.14848 -13.71260 -13.37695 -13.08377 -12.84890 -12.64596 -12.35389 -12.28845 -12.26953 -12.04947 -11.94580 -11.67093 -11.46107 -10.88684 -10.55739 -10.53659 -9.39384 -8.13412 -6.31945 1.34846 1.37926 1.48417 2.08848 2.37884 2.93080 3.10742 3.47339 3.78897 3.89801 4.20617 4.30980 4.35442 4.50307 4.63426 4.71466 4.79504 4.86800 4.89413 4.92675 5.00100 5.09482 5.17190 5.24043 5.45667 5.64258 5.84994 5.95829 6.00651 6.23175 6.67307 6.79597 7.37542 8.86831 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033871 B = 0.007729 C = 0.006611 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 826.476730 B = 3621.884718 C = 4234.101613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.198 3.802 3 H 0.044 0.956 4 C -0.550 4.550 5 H 0.046 0.954 6 C 0.021 3.979 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.275 1.275 10 H -0.274 1.274 11 H -0.280 1.280 12 N -0.494 5.494 13 O -0.267 6.267 14 C 0.067 3.933 15 C -0.113 4.113 16 H 0.089 0.911 17 C -0.135 4.135 18 C 0.043 3.957 19 O -0.411 6.411 20 C 0.059 3.941 21 H 0.022 0.978 22 H 0.062 0.938 23 H 0.030 0.970 24 H 0.265 0.735 25 H 0.324 0.676 26 H 0.064 0.936 27 H 0.049 0.951 28 H 0.111 0.889 29 H 0.088 0.912 30 H 0.106 0.894 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.940 -10.051 -11.506 15.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.089 3.911 3 H 0.061 0.939 4 C -0.589 4.589 5 H 0.064 0.936 6 C -0.179 4.179 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.200 1.200 10 H -0.200 1.200 11 H -0.206 1.206 12 N -0.163 5.163 13 O -0.275 6.275 14 C -0.011 4.011 15 C -0.133 4.133 16 H 0.107 0.893 17 C -0.172 4.172 18 C -0.032 4.032 19 O -0.331 6.331 20 C -0.017 4.017 21 H 0.041 0.959 22 H 0.080 0.920 23 H 0.049 0.951 24 H 0.074 0.926 25 H 0.138 0.862 26 H 0.082 0.918 27 H 0.067 0.933 28 H 0.129 0.871 29 H 0.107 0.893 30 H 0.124 0.876 31 H 0.089 0.911 32 H 0.076 0.924 33 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 1.298 -9.939 -11.500 15.256 hybrid contribution 0.829 -0.297 1.629 1.851 sum 2.126 -10.236 -9.872 14.379 Atomic orbital electron populations 1.21434 0.96916 0.98858 0.99629 1.19372 0.93885 0.92494 0.85317 0.93864 1.21888 1.31825 1.12551 0.92677 0.93554 1.25625 0.95040 0.95595 1.01685 1.69973 1.37065 1.23796 1.24257 0.85607 0.78208 0.78669 0.79745 1.19996 1.19972 1.20617 1.67099 1.14653 0.93905 1.40606 1.90892 1.72157 1.20152 1.44310 1.22409 0.97985 0.90463 0.90212 1.22686 1.01581 0.93272 0.95777 0.89280 1.23255 1.03766 0.93259 0.96955 1.23634 1.01035 0.97405 0.81160 1.88362 1.84041 1.30483 1.30211 1.23048 0.99491 0.82163 0.97008 0.95915 0.91959 0.95132 0.92603 0.86230 0.91777 0.93270 0.87063 0.89314 0.87625 0.91140 0.92375 0.92763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.02 71.98 0.65 -4.96 16 2 C 0.20 10.18 3.15 44.17 0.14 10.32 16 3 H 0.04 2.36 8.14 -2.38 -0.02 2.34 16 4 C -0.55 -30.76 8.35 25.60 0.21 -30.55 16 5 H 0.05 2.64 7.75 -2.91 -0.02 2.62 16 6 C 0.02 1.15 5.30 84.65 0.45 1.60 16 7 N -0.91 -52.25 11.31 21.45 0.24 -52.00 16 8 Si 0.95 44.44 29.54 68.60 2.03 46.47 16 9 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 10 H -0.27 -12.32 7.11 99.48 0.71 -11.62 16 11 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 12 N -0.49 -21.49 7.11 -171.79 -1.22 -22.71 16 13 O -0.27 -11.30 9.82 -50.16 -0.49 -11.79 16 14 C 0.07 2.06 5.70 71.98 0.41 2.47 16 15 C -0.11 -3.01 3.29 -9.53 -0.03 -3.04 16 16 H 0.09 2.42 8.14 -2.38 -0.02 2.40 16 17 C -0.13 -2.46 6.62 32.05 0.21 -2.25 16 18 C 0.04 0.85 7.78 72.65 0.56 1.42 16 19 O -0.41 -12.07 11.36 -148.98 -1.69 -13.76 16 20 C 0.06 1.86 7.26 72.45 0.53 2.39 16 21 H 0.02 1.15 7.64 -2.39 -0.02 1.13 16 22 H 0.06 3.42 6.06 -2.38 -0.01 3.41 16 23 H 0.03 1.39 8.14 -2.38 -0.02 1.37 16 24 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 25 H 0.32 12.92 8.99 -89.69 -0.81 12.12 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.05 1.41 8.07 -2.39 -0.02 1.39 16 28 H 0.11 1.48 8.14 -2.39 -0.02 1.46 16 29 H 0.09 1.49 8.04 -2.38 -0.02 1.47 16 30 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 31 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 32 H 0.06 1.95 7.76 -2.39 -0.02 1.93 16 33 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 Total: -1.00 -62.98 274.68 2.27 -60.71 By element: Atomic # 1 Polarization: 15.43 SS G_CDS: 0.28 Total: 15.70 kcal Atomic # 6 Polarization: -25.75 SS G_CDS: 3.13 Total: -22.62 kcal Atomic # 7 Polarization: -73.74 SS G_CDS: -0.98 Total: -74.71 kcal Atomic # 8 Polarization: -23.37 SS G_CDS: -2.18 Total: -25.55 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -62.98 2.27 -60.71 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308142584.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.623 kcal (2) G-P(sol) polarization free energy of solvation -62.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.711 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds