Wall clock time and date at job start Mon Mar 30 2020 02:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81400 * 1 3 3 C 1.81396 * 103.00067 * 2 1 4 4 H 1.09000 * 112.90991 * 43.75060 * 3 2 1 5 5 C 1.54056 * 113.69694 * 272.42436 * 3 2 1 6 6 C 1.53788 * 87.07520 * 220.05281 * 5 3 2 7 7 C 1.53781 * 87.08314 * 25.42712 * 6 5 3 8 8 H 1.08993 * 113.61265 * 219.93639 * 7 6 5 9 9 N 1.46906 * 113.61285 * 89.11630 * 7 6 5 10 10 C 1.46896 * 110.99756 * 105.86380 * 9 7 6 11 11 H 1.08996 * 109.47253 * 35.00259 * 10 9 7 12 12 C 1.52997 * 109.47250 * 274.99739 * 10 9 7 13 13 C 1.50707 * 109.47021 * 154.99851 * 10 9 7 14 14 H 1.08001 * 119.99710 * 359.97438 * 13 10 9 15 15 C 1.37874 * 120.00187 * 179.97438 * 13 10 9 16 16 N 1.31519 * 119.99529 * 359.97438 * 15 13 10 17 17 Si 1.86795 * 119.99963 * 180.02562 * 15 13 10 18 18 H 1.48497 * 109.47365 * 0.02562 * 17 15 13 19 19 H 1.48506 * 109.46913 * 119.99998 * 17 15 13 20 20 H 1.48500 * 109.46932 * 239.99697 * 17 15 13 21 21 H 1.09000 * 109.46955 * 300.00272 * 1 2 3 22 22 H 1.09004 * 109.46830 * 59.99795 * 1 2 3 23 23 H 1.08996 * 109.46783 * 179.97438 * 1 2 3 24 24 H 1.08991 * 113.62178 * 105.50479 * 5 3 2 25 25 H 1.09005 * 113.68878 * 334.60560 * 5 3 2 26 26 H 1.08999 * 113.61162 * 270.87659 * 6 5 3 27 27 H 1.09000 * 113.61047 * 139.97687 * 6 5 3 28 28 H 1.00903 * 110.99376 * 229.81715 * 9 7 6 29 29 H 1.09010 * 109.47241 * 300.00342 * 12 10 9 30 30 H 1.08999 * 109.47067 * 60.00155 * 12 10 9 31 31 H 1.08997 * 109.47635 * 180.02562 * 12 10 9 32 32 H 0.97007 * 119.99384 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3441 0.6943 5 6 2.3032 2.3842 -1.4094 6 6 3.5229 3.1750 -0.9074 7 6 3.7284 2.0520 0.1228 8 1 4.0258 2.4120 1.1077 9 7 4.5760 0.9551 -0.3636 10 6 5.9081 1.0059 0.2534 11 1 5.8196 1.3601 1.2804 12 6 6.8018 1.9609 -0.5404 13 6 6.5169 -0.3728 0.2484 14 1 5.9687 -1.2036 -0.1708 15 6 7.7735 -0.5734 0.7790 16 7 8.4411 0.4384 1.2890 17 14 8.5283 -2.2821 0.7721 18 1 7.5817 -3.2389 0.1446 19 1 9.7954 -2.2604 -0.0021 20 1 8.8082 -2.7052 2.1678 21 1 -0.3633 0.5139 0.8900 22 1 -0.3633 0.5139 -0.8900 23 1 -0.3633 -1.0276 -0.0005 24 1 1.4489 3.0124 -1.6611 25 1 2.5423 1.6622 -2.1903 26 1 3.2666 4.1357 -0.4607 27 1 4.3270 3.2485 -1.6395 28 1 4.1371 0.0608 -0.2035 29 1 6.8903 1.6065 -1.5674 30 1 6.3615 2.9580 -0.5367 31 1 7.7904 1.9982 -0.0828 32 1 9.3251 0.2971 1.6627 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308143582.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:02 Heat of formation + Delta-G solvation = -0.562070 kcal Electronic energy + Delta-G solvation = -12800.522327 eV Core-core repulsion = 10694.074664 eV Total energy + Delta-G solvation = -2106.447663 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.02246 -36.51761 -33.72512 -30.04022 -29.51380 -27.38783 -26.55833 -25.23379 -22.09431 -20.11341 -18.60310 -17.51061 -17.00444 -16.38799 -15.83671 -15.54616 -14.77984 -14.49105 -14.36933 -13.95934 -13.66197 -13.29616 -13.06993 -12.83664 -12.75204 -12.54434 -12.23649 -12.06972 -11.85219 -11.58689 -11.22971 -10.85391 -10.61977 -10.54123 -9.09506 -8.61297 -8.14801 -6.28929 0.80182 1.39672 1.40923 1.53823 1.73969 2.40633 3.13198 3.34769 3.62560 3.75317 3.99536 4.22478 4.38313 4.40607 4.53256 4.72207 4.83078 4.89640 4.92042 5.07427 5.14494 5.19809 5.27601 5.38742 5.53745 5.68172 5.88069 6.21856 6.45569 6.77386 6.97557 7.41317 8.91009 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.036087 B = 0.008570 C = 0.007228 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.720004 B = 3266.361303 C = 3872.932718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 S -0.315 6.315 3 C -0.075 4.075 4 H 0.122 0.878 5 C -0.099 4.099 6 C -0.126 4.126 7 C 0.073 3.927 8 H 0.035 0.965 9 N -0.662 5.662 10 C 0.217 3.783 11 H -0.033 1.033 12 C -0.109 4.109 13 C -0.539 4.539 14 H 0.053 0.947 15 C 0.014 3.986 16 N -0.917 5.917 17 Si 0.962 3.038 18 H -0.269 1.269 19 H -0.276 1.276 20 H -0.278 1.278 21 H 0.084 0.916 22 H 0.089 0.911 23 H 0.107 0.893 24 H 0.094 0.906 25 H 0.080 0.920 26 H 0.101 0.899 27 H 0.065 0.935 28 H 0.336 0.664 29 H 0.026 0.974 30 H 0.026 0.974 31 H 0.055 0.945 32 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.491 3.449 -2.981 15.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.275 4.275 2 S -0.087 6.087 3 C -0.204 4.204 4 H 0.140 0.860 5 C -0.138 4.138 6 C -0.165 4.165 7 C -0.040 4.040 8 H 0.053 0.947 9 N -0.296 5.296 10 C 0.109 3.891 11 H -0.016 1.016 12 C -0.167 4.167 13 C -0.577 4.577 14 H 0.071 0.929 15 C -0.185 4.185 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.193 1.193 19 H -0.202 1.202 20 H -0.204 1.204 21 H 0.103 0.897 22 H 0.108 0.892 23 H 0.126 0.874 24 H 0.112 0.888 25 H 0.098 0.902 26 H 0.119 0.881 27 H 0.084 0.916 28 H 0.158 0.842 29 H 0.046 0.954 30 H 0.045 0.955 31 H 0.074 0.926 32 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -13.473 2.902 -3.440 14.205 hybrid contribution -0.186 -0.136 1.226 1.248 sum -13.659 2.765 -2.214 14.111 Atomic orbital electron populations 1.23395 0.91165 1.07158 1.05751 1.87337 1.10706 1.12875 1.97821 1.25171 0.99325 0.92973 1.02943 0.85977 1.22989 0.98379 0.98656 0.93802 1.22995 0.98554 0.96651 0.98344 1.22678 0.89982 0.94699 0.96594 0.94667 1.60667 1.03124 1.05234 1.60568 1.18997 0.85599 0.94799 0.89741 1.01587 1.21512 1.00709 0.96019 0.98474 1.21596 1.02284 0.94475 1.39347 0.92921 1.25716 0.97309 1.00891 0.94567 1.70033 1.13277 1.31942 1.40376 0.85447 0.78293 0.79742 0.77808 1.19328 1.20199 1.20410 0.89671 0.89247 0.87421 0.88783 0.90155 0.88074 0.91594 0.84193 0.95444 0.95504 0.92583 0.92754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.04 10.76 113.37 1.22 -0.82 16 2 S -0.31 -9.70 20.01 -56.49 -1.13 -10.83 16 3 C -0.08 -2.15 4.26 31.22 0.13 -2.01 16 4 H 0.12 2.89 8.14 -2.39 -0.02 2.87 16 5 C -0.10 -2.53 7.59 31.22 0.24 -2.29 16 6 C -0.13 -3.69 7.76 31.12 0.24 -3.45 16 7 C 0.07 2.68 3.94 45.44 0.18 2.86 16 8 H 0.04 1.42 7.49 -2.39 -0.02 1.41 16 9 N -0.66 -30.02 6.19 -470.61 -2.91 -32.93 16 10 C 0.22 11.67 2.60 44.17 0.11 11.79 16 11 H -0.03 -1.99 7.47 -2.39 -0.02 -2.00 16 12 C -0.11 -5.61 9.19 71.98 0.66 -4.95 16 13 C -0.54 -31.26 8.59 25.60 0.22 -31.04 16 14 H 0.05 3.06 7.62 -2.91 -0.02 3.04 16 15 C 0.01 0.82 5.30 84.65 0.45 1.27 16 16 N -0.92 -54.24 11.32 21.45 0.24 -54.00 16 17 Si 0.96 45.03 29.54 68.60 2.03 47.05 16 18 H -0.27 -12.34 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 20 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 21 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 22 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 23 H 0.11 1.84 8.14 -2.39 -0.02 1.82 16 24 H 0.09 1.78 8.14 -2.39 -0.02 1.76 16 25 H 0.08 2.36 8.11 -2.38 -0.02 2.34 16 26 H 0.10 2.40 8.14 -2.39 -0.02 2.38 16 27 H 0.07 2.17 7.89 -2.39 -0.02 2.15 16 28 H 0.34 15.70 5.80 -91.79 -0.53 15.16 16 29 H 0.03 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.03 1.22 7.69 -2.39 -0.02 1.20 16 31 H 0.06 3.15 6.07 -2.39 -0.01 3.14 16 32 H 0.26 14.65 8.31 -92.70 -0.77 13.88 16 Total: -1.00 -63.70 271.80 2.23 -61.47 By element: Atomic # 1 Polarization: 17.34 SS G_CDS: 0.55 Total: 17.89 kcal Atomic # 6 Polarization: -32.10 SS G_CDS: 3.46 Total: -28.65 kcal Atomic # 7 Polarization: -84.26 SS G_CDS: -2.67 Total: -86.93 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.05 kcal Atomic # 16 Polarization: -9.70 SS G_CDS: -1.13 Total: -10.83 kcal Total: -63.70 2.23 -61.47 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143582.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.906 kcal (2) G-P(sol) polarization free energy of solvation -63.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds