Wall clock time and date at job start Mon Mar 30 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81394 * 1 3 3 C 1.81402 * 103.00479 * 2 1 4 4 H 1.09000 * 112.84795 * 43.80331 * 3 2 1 5 5 C 1.53780 * 113.68930 * 272.53834 * 3 2 1 6 6 C 1.53781 * 87.08031 * 220.00229 * 5 3 2 7 7 C 1.53777 * 113.61885 * 174.99988 * 3 2 1 8 8 H 1.09009 * 113.60995 * 25.43211 * 7 3 2 9 9 N 1.46894 * 113.61502 * 254.61783 * 7 3 2 10 10 C 1.46899 * 111.00067 * 154.99770 * 9 7 3 11 11 H 1.09002 * 109.47152 * 35.00127 * 10 9 7 12 12 C 1.52992 * 109.47346 * 274.99568 * 10 9 7 13 13 C 1.50708 * 109.47283 * 154.99622 * 10 9 7 14 14 H 1.07997 * 119.99702 * 34.21607 * 13 10 9 15 15 C 1.37875 * 120.00165 * 213.94202 * 13 10 9 16 16 N 1.31513 * 120.00174 * 182.47668 * 15 13 10 17 17 Si 1.86799 * 119.99870 * 2.48160 * 15 13 10 18 18 H 1.48503 * 109.47130 * 85.08430 * 17 15 13 19 19 H 1.48499 * 109.46831 * 205.08206 * 17 15 13 20 20 H 1.48498 * 109.47333 * 325.08309 * 17 15 13 21 21 H 1.08997 * 109.46945 * 300.00391 * 1 2 3 22 22 H 1.09006 * 109.47003 * 59.99380 * 1 2 3 23 23 H 1.08997 * 109.47445 * 179.97438 * 1 2 3 24 24 H 1.08996 * 113.61578 * 334.55642 * 5 3 2 25 25 H 1.09003 * 113.61729 * 105.37457 * 5 3 2 26 26 H 1.08998 * 113.61436 * 270.88358 * 6 5 3 27 27 H 1.09003 * 113.61519 * 139.98036 * 6 5 3 28 28 H 1.00906 * 110.99885 * 278.94661 * 9 7 3 29 29 H 1.09006 * 109.47567 * 184.74398 * 12 10 9 30 30 H 1.08996 * 109.47444 * 304.74462 * 12 10 9 31 31 H 1.09005 * 109.47032 * 64.74827 * 12 10 9 32 32 H 0.96991 * 120.00399 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8139 0.0000 0.0000 3 6 2.2222 1.7675 0.0000 4 1 1.6110 2.3430 0.6953 5 6 2.3004 2.3835 -1.4068 6 6 3.5203 3.1752 -0.9067 7 6 3.7284 2.0519 0.1228 8 1 4.3573 1.2380 -0.2381 9 7 4.1293 2.5370 1.4501 10 6 5.5424 2.2363 1.7158 11 1 6.1112 2.3156 0.7893 12 6 5.6660 0.8157 2.2702 13 6 6.0841 3.2175 2.7233 14 1 5.4453 3.5926 3.5091 15 6 7.3968 3.6320 2.6451 16 7 7.8831 4.4503 3.5525 17 14 8.4844 3.0313 1.2503 18 1 8.2901 3.9001 0.0617 19 1 9.9067 3.0831 1.6741 20 1 8.1210 1.6332 0.9061 21 1 -0.3633 0.5139 0.8899 22 1 -0.3633 0.5140 -0.8900 23 1 -0.3634 -1.0276 -0.0005 24 1 2.5388 1.6610 -2.1873 25 1 1.4444 3.0102 -1.6574 26 1 3.2640 4.1355 -0.4593 27 1 4.3232 3.2496 -1.6401 28 1 3.9459 3.5248 1.5447 29 1 6.7027 0.6222 2.5461 30 1 5.0306 0.7123 3.1497 31 1 5.3530 0.1003 1.5095 32 1 8.8067 4.7416 3.4978 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308143583.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:04 Heat of formation + Delta-G solvation = 13.073468 kcal Electronic energy + Delta-G solvation = -12722.182215 eV Core-core repulsion = 10616.325834 eV Total energy + Delta-G solvation = -2105.856382 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.76070 -34.81719 -31.96843 -28.98979 -28.61803 -25.59215 -25.20884 -23.49944 -19.77706 -19.56477 -17.04544 -16.53872 -15.16868 -14.88854 -14.32658 -13.75329 -13.51709 -13.18383 -12.99321 -12.66370 -12.44763 -12.18356 -12.09446 -11.43735 -11.09466 -10.86720 -10.77049 -10.59255 -10.22531 -10.07778 -9.71564 -9.62987 -8.99088 -8.62730 -7.48257 -7.41999 -6.12287 -4.13174 1.91613 2.79237 3.24107 3.33649 3.36794 4.37361 4.66323 4.69527 4.92291 5.11266 5.15002 5.18494 5.24692 5.45784 5.68362 5.74925 5.82307 5.86789 6.06244 6.22947 6.42297 6.47439 6.74618 6.86424 6.94844 7.43894 7.62756 7.95227 8.38044 8.63772 8.96719 9.51765 11.00739 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.046525 B = 0.007744 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.685671 B = 3614.819668 C = 3765.983396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 S -0.258 6.258 3 C -0.067 4.067 4 H 0.105 0.895 5 C -0.128 4.128 6 C -0.166 4.166 7 C 0.100 3.900 8 H 0.095 0.905 9 N -0.670 5.670 10 C 0.182 3.818 11 H 0.004 0.996 12 C -0.126 4.126 13 C -0.519 4.519 14 H 0.079 0.921 15 C 0.074 3.926 16 N -0.897 5.897 17 Si 0.874 3.126 18 H -0.278 1.278 19 H -0.288 1.288 20 H -0.264 1.264 21 H 0.073 0.927 22 H 0.071 0.929 23 H 0.094 0.906 24 H 0.088 0.912 25 H 0.067 0.933 26 H 0.086 0.914 27 H 0.070 0.930 28 H 0.344 0.656 29 H 0.042 0.958 30 H 0.051 0.949 31 H 0.019 0.981 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.450 -5.172 -9.933 16.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.292 4.292 2 S -0.029 6.029 3 C -0.197 4.197 4 H 0.123 0.877 5 C -0.169 4.169 6 C -0.207 4.207 7 C -0.014 4.014 8 H 0.113 0.887 9 N -0.301 5.301 10 C 0.074 3.926 11 H 0.021 0.979 12 C -0.184 4.184 13 C -0.557 4.557 14 H 0.097 0.903 15 C -0.129 4.129 16 N -0.534 5.534 17 Si 0.702 3.298 18 H -0.204 1.204 19 H -0.214 1.214 20 H -0.189 1.189 21 H 0.092 0.908 22 H 0.090 0.910 23 H 0.113 0.887 24 H 0.107 0.893 25 H 0.086 0.914 26 H 0.105 0.895 27 H 0.089 0.911 28 H 0.163 0.837 29 H 0.062 0.938 30 H 0.070 0.930 31 H 0.038 0.962 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -10.840 -6.546 -9.477 15.817 hybrid contribution 0.212 1.407 -1.186 1.853 sum -10.628 -5.139 -10.664 15.909 Atomic orbital electron populations 1.23304 0.95624 1.05764 1.04460 1.86861 1.05879 1.12623 1.97565 1.25114 1.02406 0.92506 0.99679 0.87678 1.23113 0.98759 0.99359 0.95664 1.23610 0.98164 0.98750 1.00219 1.22767 0.92023 0.96628 0.89944 0.88695 1.60491 1.23327 1.21927 1.24326 1.19548 0.83955 0.94267 0.94807 0.97860 1.21868 0.99921 0.96881 0.99757 1.21074 0.96857 1.24614 1.13152 0.90265 1.25010 0.97751 0.94360 0.95767 1.69892 1.15415 1.33675 1.34464 0.86904 0.79928 0.80115 0.82871 1.20354 1.21386 1.18864 0.90763 0.91029 0.88744 0.89323 0.91403 0.89543 0.91148 0.83650 0.93849 0.92986 0.96184 0.92567 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.29 10.76 101.05 1.09 -0.21 16 2 S -0.26 -3.76 22.18 -107.50 -2.38 -6.14 16 3 C -0.07 -0.98 4.07 -25.92 -0.11 -1.08 16 4 H 0.11 1.54 8.14 -51.93 -0.42 1.11 16 5 C -0.13 -1.59 7.67 -25.92 -0.20 -1.79 16 6 C -0.17 -2.38 7.70 -25.92 -0.20 -2.58 16 7 C 0.10 1.71 3.50 -66.91 -0.23 1.47 16 8 H 0.10 1.74 7.47 -51.92 -0.39 1.36 16 9 N -0.67 -13.67 6.42 -100.10 -0.64 -14.31 16 10 C 0.18 4.31 2.05 -68.86 -0.14 4.17 16 11 H 0.00 0.09 5.16 -51.93 -0.27 -0.18 16 12 C -0.13 -2.85 9.33 37.15 0.35 -2.51 16 13 C -0.52 -14.37 8.84 -34.44 -0.30 -14.67 16 14 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 15 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 16 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 17 Si 0.87 21.44 26.73 -169.99 -4.54 16.89 16 18 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 19 H -0.29 -7.03 7.11 56.52 0.40 -6.62 16 20 H -0.26 -6.28 6.89 56.52 0.39 -5.89 16 21 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 22 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.09 0.87 8.14 -51.93 -0.42 0.44 16 24 H 0.09 1.07 8.10 -51.93 -0.42 0.65 16 25 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 26 H 0.09 1.21 7.82 -51.93 -0.41 0.80 16 27 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.34 6.97 7.81 -39.29 -0.31 6.66 16 29 H 0.04 0.99 7.94 -51.93 -0.41 0.58 16 30 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 31 H 0.02 0.41 7.81 -51.93 -0.41 0.00 16 32 H 0.26 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 275.28 15.07 4.15 4.15 Total: -1.00 -29.29 275.28 -7.63 -36.93 By element: Atomic # 1 Polarization: 9.12 SS G_CDS: -5.14 Total: 3.99 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 0.15 Total: -15.19 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.13 Total: -40.62 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -4.54 Total: 16.89 kcal Atomic # 16 Polarization: -3.76 SS G_CDS: -2.38 Total: -6.14 kcal Total LS contribution 4.15 Total: 4.15 kcal Total: -29.29 -7.63 -36.93 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143583.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.002 kcal (2) G-P(sol) polarization free energy of solvation -29.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.928 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds