Wall clock time and date at job start Mon Mar 30 2020 02:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81404 * 103.00092 * 2 1 4 4 H 1.08998 * 112.90374 * 43.75131 * 3 2 1 5 5 C 1.53780 * 113.61560 * 272.50210 * 3 2 1 6 6 C 1.53783 * 87.07824 * 220.01738 * 5 3 2 7 7 C 1.53773 * 113.61534 * 174.99891 * 3 2 1 8 8 H 1.09000 * 113.61879 * 254.61869 * 7 3 2 9 9 N 1.46901 * 113.61355 * 25.43609 * 7 3 2 10 10 C 1.46898 * 111.00104 * 204.99572 * 9 7 3 11 11 H 1.08997 * 109.47601 * 325.00241 * 10 9 7 12 12 C 1.53004 * 109.47005 * 85.00096 * 10 9 7 13 13 C 1.50700 * 109.47591 * 204.99564 * 10 9 7 14 14 H 1.08000 * 119.99663 * 354.49534 * 13 10 9 15 15 C 1.37871 * 120.00132 * 174.48476 * 13 10 9 16 16 N 1.31516 * 120.00153 * 164.79364 * 15 13 10 17 17 Si 1.86799 * 120.00288 * 344.79426 * 15 13 10 18 18 H 1.48500 * 109.47179 * 269.99853 * 17 15 13 19 19 H 1.48499 * 109.47107 * 149.99899 * 17 15 13 20 20 H 1.48497 * 109.46997 * 29.99517 * 17 15 13 21 21 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46732 * 299.99843 * 1 2 3 23 23 H 1.09003 * 109.47109 * 59.99534 * 1 2 3 24 24 H 1.09001 * 113.61147 * 334.56391 * 5 3 2 25 25 H 1.08998 * 113.61801 * 105.38585 * 5 3 2 26 26 H 1.08999 * 113.61331 * 270.87700 * 6 5 3 27 27 H 1.08999 * 113.61125 * 139.98207 * 6 5 3 28 28 H 1.00904 * 110.99880 * 328.95339 * 9 7 3 29 29 H 1.09003 * 109.47344 * 173.56772 * 12 10 9 30 30 H 1.09004 * 109.46788 * 293.56915 * 12 10 9 31 31 H 1.08999 * 109.47205 * 53.56391 * 12 10 9 32 32 H 0.97006 * 119.99587 * 354.90946 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3440 0.6943 5 6 2.3008 2.3816 -1.4077 6 6 3.5206 3.1738 -0.9083 7 6 3.7283 2.0520 0.1228 8 1 4.0259 2.4119 1.1077 9 7 4.5759 0.9552 -0.3636 10 6 5.8959 0.9845 0.2803 11 1 6.1950 2.0189 0.4491 12 6 5.8261 0.2488 1.6201 13 6 6.9052 0.3088 -0.6117 14 1 6.5824 -0.1792 -1.5195 15 6 8.2406 0.3138 -0.2690 16 7 9.0753 -0.5104 -0.8639 17 14 8.8647 1.4910 1.0402 18 1 9.2792 2.7663 0.4021 19 1 10.0277 0.8851 1.7369 20 1 7.7831 1.7576 2.0222 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.5394 1.6579 -2.1870 25 1 1.4449 3.0079 -1.6593 26 1 3.2643 4.1349 -0.4624 27 1 4.3236 3.2471 -1.6417 28 1 4.1262 0.0624 -0.2262 29 1 6.8272 0.1707 2.0443 30 1 5.1832 0.8016 2.3051 31 1 5.4182 -0.7501 1.4653 32 1 8.7404 -1.1718 -1.4895 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308143584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:06 Heat of formation + Delta-G solvation = 19.758953 kcal Electronic energy + Delta-G solvation = -12851.092153 eV Core-core repulsion = 10745.525676 eV Total energy + Delta-G solvation = -2105.566477 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.79649 -34.89521 -31.94032 -29.04264 -28.26402 -25.59363 -24.75806 -23.84814 -20.08895 -18.89736 -17.41615 -16.45417 -15.59961 -14.52973 -14.25363 -14.01778 -13.62256 -13.38654 -13.08842 -12.59208 -12.25942 -12.01186 -11.94632 -11.42122 -11.18906 -10.83768 -10.49613 -10.45829 -10.06266 -10.00836 -9.62669 -9.50431 -8.82092 -8.20986 -7.54567 -7.40280 -6.34376 -3.94452 1.79669 2.69999 3.44830 3.46103 3.61349 4.54651 4.56493 4.78947 4.93230 5.09711 5.11858 5.16091 5.34804 5.44410 5.63771 5.64699 5.91389 5.97116 6.33079 6.38146 6.38569 6.46609 6.59008 6.69456 6.91048 7.25697 7.86297 8.31563 8.40632 8.54216 9.09777 9.72647 11.04072 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.044100 B = 0.008292 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.762296 B = 3375.938160 C = 3557.777181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 S -0.244 6.244 3 C -0.095 4.095 4 H 0.099 0.901 5 C -0.113 4.113 6 C -0.134 4.134 7 C 0.093 3.907 8 H 0.056 0.944 9 N -0.649 5.649 10 C 0.188 3.812 11 H 0.029 0.971 12 C -0.175 4.175 13 C -0.579 4.579 14 H 0.063 0.937 15 C 0.028 3.972 16 N -0.912 5.912 17 Si 1.042 2.958 18 H -0.287 1.287 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.096 0.904 22 H 0.070 0.930 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.059 0.941 26 H 0.074 0.926 27 H 0.085 0.915 28 H 0.338 0.662 29 H 0.054 0.946 30 H 0.019 0.981 31 H 0.044 0.956 32 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.624 5.444 3.159 16.845 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.295 4.295 2 S -0.016 6.016 3 C -0.224 4.224 4 H 0.117 0.883 5 C -0.153 4.153 6 C -0.174 4.174 7 C -0.020 4.020 8 H 0.074 0.926 9 N -0.283 5.283 10 C 0.079 3.921 11 H 0.046 0.954 12 C -0.234 4.234 13 C -0.617 4.617 14 H 0.081 0.919 15 C -0.176 4.176 16 N -0.547 5.547 17 Si 0.871 3.129 18 H -0.214 1.214 19 H -0.213 1.213 20 H -0.200 1.200 21 H 0.115 0.885 22 H 0.089 0.911 23 H 0.092 0.908 24 H 0.116 0.884 25 H 0.078 0.922 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.161 0.839 29 H 0.073 0.927 30 H 0.038 0.962 31 H 0.063 0.937 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -13.374 5.371 3.386 14.805 hybrid contribution -2.549 0.154 0.243 2.566 sum -15.924 5.525 3.629 17.241 Atomic orbital electron populations 1.23364 0.95909 1.05944 1.04329 1.86972 1.05578 1.11374 1.97645 1.25217 1.01756 0.93513 1.01907 0.88286 1.23059 0.97997 0.99288 0.94980 1.22980 0.98538 0.96151 0.99754 1.22498 0.87981 0.94878 0.96632 0.92627 1.60747 1.03280 1.04399 1.59905 1.19643 0.86634 0.95598 0.90252 0.95366 1.22859 1.00511 1.00246 0.99782 1.21975 0.92356 1.38224 1.09174 0.91877 1.25664 0.93336 0.98447 1.00191 1.70793 1.37805 1.17828 1.28249 0.84138 0.75781 0.76412 0.76592 1.21373 1.21312 1.20007 0.88526 0.91116 0.90778 0.88416 0.92238 0.90722 0.89646 0.83915 0.92675 0.96183 0.93651 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.33 10.76 101.05 1.09 -0.24 16 2 S -0.24 -3.66 19.99 -107.50 -2.15 -5.81 16 3 C -0.09 -1.36 4.24 -25.92 -0.11 -1.47 16 4 H 0.10 1.23 8.14 -51.93 -0.42 0.81 16 5 C -0.11 -1.57 7.58 -25.92 -0.20 -1.76 16 6 C -0.13 -2.03 7.88 -25.92 -0.20 -2.23 16 7 C 0.09 1.62 3.88 -66.90 -0.26 1.36 16 8 H 0.06 0.98 7.53 -51.93 -0.39 0.59 16 9 N -0.65 -13.98 6.14 -100.11 -0.61 -14.60 16 10 C 0.19 4.58 1.98 -68.86 -0.14 4.44 16 11 H 0.03 0.70 6.47 -51.93 -0.34 0.36 16 12 C -0.17 -3.97 8.46 37.16 0.31 -3.66 16 13 C -0.58 -16.70 9.12 -34.44 -0.31 -17.02 16 14 H 0.06 2.00 8.06 -52.49 -0.42 1.58 16 15 C 0.03 0.81 5.33 -17.82 -0.09 0.72 16 16 N -0.91 -28.55 13.70 55.43 0.76 -27.79 16 17 Si 1.04 25.50 26.17 -169.99 -4.45 21.05 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.27 -6.16 5.54 56.52 0.31 -5.84 16 21 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 22 H 0.07 0.66 8.14 -51.92 -0.42 0.24 16 23 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 24 H 0.10 1.51 8.10 -51.93 -0.42 1.09 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 27 H 0.08 1.45 8.14 -51.93 -0.42 1.03 16 28 H 0.34 7.29 5.92 -35.22 -0.21 7.08 16 29 H 0.05 1.28 5.06 -51.93 -0.26 1.02 16 30 H 0.02 0.39 7.84 -51.93 -0.41 -0.01 16 31 H 0.04 1.02 8.01 -51.93 -0.42 0.60 16 32 H 0.27 8.39 8.73 -40.82 -0.36 8.03 16 LS Contribution 267.68 15.07 4.03 4.03 Total: -1.00 -30.49 267.68 -7.40 -37.88 By element: Atomic # 1 Polarization: 10.15 SS G_CDS: -5.06 Total: 5.08 kcal Atomic # 6 Polarization: -19.93 SS G_CDS: 0.09 Total: -19.85 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: 0.14 Total: -42.39 kcal Atomic # 14 Polarization: 25.50 SS G_CDS: -4.45 Total: 21.05 kcal Atomic # 16 Polarization: -3.66 SS G_CDS: -2.15 Total: -5.81 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -30.49 -7.40 -37.88 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.642 kcal (2) G-P(sol) polarization free energy of solvation -30.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.156 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds