Wall clock time and date at job start Mon Mar 30 2020 02:21:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81402 * 1 3 3 C 1.81404 * 103.00092 * 2 1 4 4 H 1.08998 * 112.90374 * 43.75131 * 3 2 1 5 5 C 1.53780 * 113.61560 * 272.50210 * 3 2 1 6 6 C 1.53783 * 87.07824 * 220.01738 * 5 3 2 7 7 C 1.53773 * 113.61534 * 174.99891 * 3 2 1 8 8 H 1.09000 * 113.61879 * 254.61869 * 7 3 2 9 9 N 1.46901 * 113.61355 * 25.43609 * 7 3 2 10 10 C 1.46898 * 111.00104 * 204.99572 * 9 7 3 11 11 H 1.08997 * 109.47601 * 325.00241 * 10 9 7 12 12 C 1.53004 * 109.47005 * 85.00096 * 10 9 7 13 13 C 1.50700 * 109.47591 * 204.99564 * 10 9 7 14 14 H 1.08000 * 119.99663 * 354.49534 * 13 10 9 15 15 C 1.37871 * 120.00132 * 174.48476 * 13 10 9 16 16 N 1.31516 * 120.00153 * 164.79364 * 15 13 10 17 17 Si 1.86799 * 120.00288 * 344.79426 * 15 13 10 18 18 H 1.48500 * 109.47179 * 269.99853 * 17 15 13 19 19 H 1.48499 * 109.47107 * 149.99899 * 17 15 13 20 20 H 1.48497 * 109.46997 * 29.99517 * 17 15 13 21 21 H 1.08995 * 109.47345 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.46732 * 299.99843 * 1 2 3 23 23 H 1.09003 * 109.47109 * 59.99534 * 1 2 3 24 24 H 1.09001 * 113.61147 * 334.56391 * 5 3 2 25 25 H 1.08998 * 113.61801 * 105.38585 * 5 3 2 26 26 H 1.08999 * 113.61331 * 270.87700 * 6 5 3 27 27 H 1.08999 * 113.61125 * 139.98207 * 6 5 3 28 28 H 1.00904 * 110.99880 * 328.95339 * 9 7 3 29 29 H 1.09003 * 109.47344 * 173.56772 * 12 10 9 30 30 H 1.09004 * 109.46788 * 293.56915 * 12 10 9 31 31 H 1.08999 * 109.47205 * 53.56391 * 12 10 9 32 32 H 0.97006 * 119.99587 * 354.90946 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 6 2.2221 1.7675 0.0000 4 1 1.6109 2.3440 0.6943 5 6 2.3008 2.3816 -1.4077 6 6 3.5206 3.1738 -0.9083 7 6 3.7283 2.0520 0.1228 8 1 4.0259 2.4119 1.1077 9 7 4.5759 0.9552 -0.3636 10 6 5.8959 0.9845 0.2803 11 1 6.1950 2.0189 0.4491 12 6 5.8261 0.2488 1.6201 13 6 6.9052 0.3088 -0.6117 14 1 6.5824 -0.1792 -1.5195 15 6 8.2406 0.3138 -0.2690 16 7 9.0753 -0.5104 -0.8639 17 14 8.8647 1.4910 1.0402 18 1 9.2792 2.7663 0.4021 19 1 10.0277 0.8851 1.7369 20 1 7.7831 1.7576 2.0222 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8900 24 1 2.5394 1.6579 -2.1870 25 1 1.4449 3.0079 -1.6593 26 1 3.2643 4.1349 -0.4624 27 1 4.3236 3.2471 -1.6417 28 1 4.1262 0.0624 -0.2262 29 1 6.8272 0.1707 2.0443 30 1 5.1832 0.8016 2.3051 31 1 5.4182 -0.7501 1.4653 32 1 8.7404 -1.1718 -1.4895 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308143584.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:06 Heat of formation + Delta-G solvation = -1.173350 kcal Electronic energy + Delta-G solvation = -12851.999846 eV Core-core repulsion = 10745.525676 eV Total energy + Delta-G solvation = -2106.474170 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 215.104 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.10983 -36.71858 -34.06753 -30.29207 -29.59678 -26.90643 -26.63100 -25.25258 -22.00527 -20.27735 -19.49713 -17.73849 -16.95733 -16.00629 -15.82764 -15.49349 -15.10636 -14.47527 -14.34225 -14.02092 -13.97147 -13.50517 -13.37185 -13.18108 -12.87117 -12.42770 -12.00083 -11.92742 -11.74858 -11.43220 -11.23897 -10.99809 -10.68993 -10.44363 -9.11936 -8.67131 -8.65520 -6.30776 0.76143 1.47439 1.53520 1.69489 1.71309 2.52255 3.09624 3.27787 3.56132 3.71673 3.96177 4.15827 4.35715 4.37208 4.46106 4.48909 4.62261 4.71646 4.75712 4.87230 4.89749 5.02639 5.16974 5.19247 5.41221 5.45329 5.89510 6.09017 6.41382 6.71050 6.76452 7.47267 8.67289 Molecular weight = 215.10amu Principal moments of inertia in cm(-1) A = 0.044100 B = 0.008292 C = 0.007868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 634.762296 B = 3375.938160 C = 3557.777181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 S -0.320 6.320 3 C -0.071 4.071 4 H 0.129 0.871 5 C -0.105 4.105 6 C -0.130 4.130 7 C 0.072 3.928 8 H 0.058 0.942 9 N -0.666 5.666 10 C 0.191 3.809 11 H 0.033 0.967 12 C -0.168 4.168 13 C -0.584 4.584 14 H 0.015 0.985 15 C -0.025 4.025 16 N -0.944 5.944 17 Si 1.086 2.914 18 H -0.274 1.274 19 H -0.287 1.287 20 H -0.239 1.239 21 H 0.106 0.894 22 H 0.088 0.912 23 H 0.086 0.914 24 H 0.072 0.928 25 H 0.093 0.907 26 H 0.108 0.892 27 H 0.058 0.942 28 H 0.336 0.664 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.036 0.964 32 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.858 7.603 4.953 20.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.273 4.273 2 S -0.093 6.093 3 C -0.200 4.200 4 H 0.147 0.853 5 C -0.145 4.145 6 C -0.169 4.169 7 C -0.040 4.040 8 H 0.076 0.924 9 N -0.299 5.299 10 C 0.081 3.919 11 H 0.051 0.949 12 C -0.227 4.227 13 C -0.622 4.622 14 H 0.034 0.966 15 C -0.222 4.222 16 N -0.581 5.581 17 Si 0.907 3.093 18 H -0.200 1.200 19 H -0.213 1.213 20 H -0.162 1.162 21 H 0.125 0.875 22 H 0.107 0.893 23 H 0.105 0.895 24 H 0.090 0.910 25 H 0.111 0.889 26 H 0.127 0.873 27 H 0.077 0.923 28 H 0.158 0.842 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.055 0.945 32 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges -15.650 7.535 5.164 18.121 hybrid contribution -1.971 -0.576 -0.411 2.094 sum -17.621 6.959 4.753 19.533 Atomic orbital electron populations 1.23391 0.90990 1.07144 1.05820 1.87278 1.10965 1.13186 1.97828 1.25126 0.99538 0.92762 1.02616 0.85293 1.22953 0.98618 0.98786 0.94156 1.23022 0.98255 0.97104 0.98559 1.22675 0.89681 0.94333 0.97290 0.92373 1.60561 1.03060 1.05762 1.60562 1.19428 0.87194 0.95120 0.90121 0.94922 1.22709 1.00767 1.00005 0.99206 1.22184 0.94079 1.37690 1.08259 0.96646 1.27218 0.93891 0.99187 1.01886 1.70933 1.38427 1.19098 1.29600 0.83609 0.76329 0.74557 0.74788 1.19960 1.21266 1.16243 0.87523 0.89317 0.89487 0.90967 0.88853 0.87327 0.92315 0.84208 0.93257 0.93105 0.94517 0.94111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.86 10.76 113.37 1.22 -0.64 16 2 S -0.32 -9.14 19.99 -56.49 -1.13 -10.27 16 3 C -0.07 -1.84 4.24 31.12 0.13 -1.71 16 4 H 0.13 2.58 8.14 -2.39 -0.02 2.56 16 5 C -0.11 -2.63 7.58 31.12 0.24 -2.40 16 6 C -0.13 -3.60 7.88 31.12 0.25 -3.36 16 7 C 0.07 2.37 3.88 45.44 0.18 2.55 16 8 H 0.06 1.88 7.53 -2.39 -0.02 1.86 16 9 N -0.67 -28.67 6.14 -470.63 -2.89 -31.56 16 10 C 0.19 9.25 1.98 44.17 0.09 9.33 16 11 H 0.03 1.56 6.47 -2.39 -0.02 1.55 16 12 C -0.17 -7.36 8.46 71.98 0.61 -6.75 16 13 C -0.58 -34.76 9.12 25.60 0.23 -34.53 16 14 H 0.02 1.03 8.06 -2.91 -0.02 1.00 16 15 C -0.03 -1.50 5.33 84.65 0.45 -1.05 16 16 N -0.94 -61.22 13.70 21.45 0.29 -60.93 16 17 Si 1.09 50.76 26.17 68.60 1.80 52.55 16 18 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 19 H -0.29 -13.34 7.11 99.48 0.71 -12.64 16 20 H -0.24 -9.72 5.54 99.48 0.55 -9.17 16 21 H 0.11 1.69 8.14 -2.39 -0.02 1.67 16 22 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 23 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 24 H 0.07 2.19 8.10 -2.39 -0.02 2.17 16 25 H 0.09 1.72 8.14 -2.39 -0.02 1.70 16 26 H 0.11 2.29 8.14 -2.39 -0.02 2.27 16 27 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 28 H 0.34 14.68 5.92 -92.28 -0.55 14.14 16 29 H 0.05 2.19 5.06 -2.39 -0.01 2.18 16 30 H 0.05 1.90 7.84 -2.39 -0.02 1.88 16 31 H 0.04 1.63 8.01 -2.39 -0.02 1.61 16 32 H 0.25 16.58 8.73 -92.70 -0.81 15.77 16 Total: -1.00 -68.95 267.68 1.81 -67.14 By element: Atomic # 1 Polarization: 21.26 SS G_CDS: 0.35 Total: 21.61 kcal Atomic # 6 Polarization: -41.94 SS G_CDS: 3.39 Total: -38.55 kcal Atomic # 7 Polarization: -89.89 SS G_CDS: -2.59 Total: -92.49 kcal Atomic # 14 Polarization: 50.76 SS G_CDS: 1.80 Total: 52.55 kcal Atomic # 16 Polarization: -9.14 SS G_CDS: -1.13 Total: -10.27 kcal Total: -68.95 1.81 -67.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308143584.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.969 kcal (2) G-P(sol) polarization free energy of solvation -68.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.173 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds