Wall clock time and date at job start Mon Mar 30 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46892 * 109.46791 * 2 1 4 4 C 1.46904 * 111.00114 * 162.75708 * 3 2 1 5 5 C 1.50701 * 109.46643 * 293.94813 * 4 3 2 6 6 H 1.08004 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99775 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99653 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00227 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47514 * 270.00107 * 9 7 5 11 11 H 1.48501 * 109.46829 * 30.00589 * 9 7 5 12 12 H 1.48506 * 109.47290 * 149.99683 * 9 7 5 13 13 C 1.46902 * 111.00040 * 286.70639 * 3 2 1 14 14 H 1.09003 * 110.80165 * 315.24425 * 13 3 2 15 15 C 1.54996 * 110.90956 * 191.61478 * 13 3 2 16 16 O 1.44382 * 103.49104 * 204.77973 * 15 13 3 17 17 C 1.43742 * 106.97593 * 40.05824 * 16 15 13 18 18 C 1.54159 * 107.29955 * 333.45979 * 17 16 15 19 19 H 1.09002 * 110.51987 * 243.39727 * 18 17 16 20 20 O 1.42897 * 110.48280 * 120.73168 * 18 17 16 21 21 H 1.08999 * 109.47168 * 70.00473 * 1 2 3 22 22 H 1.09001 * 109.47307 * 190.00263 * 1 2 3 23 23 H 1.08994 * 109.47246 * 310.00248 * 1 2 3 24 24 H 1.08994 * 109.47073 * 239.99890 * 2 1 3 25 25 H 1.09005 * 109.46810 * 119.99746 * 2 1 3 26 26 H 1.08994 * 109.47414 * 173.95283 * 4 3 2 27 27 H 1.08999 * 109.47310 * 53.94527 * 4 3 2 28 28 H 0.97005 * 119.99449 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.61831 * 323.27763 * 15 13 3 30 30 H 1.08996 * 110.61978 * 86.11923 * 15 13 3 31 31 H 1.09001 * 109.87703 * 92.91410 * 17 16 15 32 32 H 1.08994 * 109.87753 * 213.91218 * 17 16 15 33 33 H 0.96688 * 114.00161 * 65.27276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4300 1.4448 0.4065 5 6 3.5559 1.0201 1.8470 6 1 2.6763 0.7339 2.4045 7 6 4.7943 0.9959 2.4528 8 7 4.9042 0.6247 3.7097 9 14 6.3159 1.4887 1.4879 10 1 6.8919 0.2908 0.8259 11 1 5.9455 2.4931 0.4587 12 1 7.3200 2.0744 2.4121 13 6 1.8234 2.0127 -1.3136 14 1 2.1241 1.3370 -2.1143 15 6 2.5917 3.3557 -1.4052 16 8 1.8629 4.0929 -2.4101 17 6 0.4658 3.8396 -2.1857 18 6 0.3542 2.4656 -1.4955 19 1 -0.1861 1.7624 -2.1293 20 8 -0.2903 2.5943 -0.2266 21 1 -0.3633 0.3514 -0.9657 22 1 -0.3634 -1.0120 0.1785 23 1 -0.3633 0.6606 0.7872 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.7973 2.4649 0.2951 27 1 4.0181 0.7762 -0.2221 28 1 5.7754 0.6081 4.1360 29 1 2.5644 3.8795 -0.4497 30 1 3.6216 3.1880 -1.7203 31 1 0.0477 4.6133 -1.5418 32 1 -0.0653 3.8225 -3.1373 33 1 -1.2137 2.8759 -0.2813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308172582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:44 Heat of formation + Delta-G solvation = -74.081086 kcal Electronic energy + Delta-G solvation = -15559.635609 eV Core-core repulsion = 13007.247052 eV Total energy + Delta-G solvation = -2552.388558 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -39.72843 -36.43680 -35.67580 -32.52082 -30.68160 -29.62229 -28.21455 -26.22274 -22.94727 -21.96645 -21.01898 -19.44241 -17.50887 -17.02296 -15.99115 -15.15413 -15.10612 -14.78256 -14.12090 -13.74561 -13.52573 -13.13853 -12.51769 -12.40291 -12.23583 -11.80194 -11.41329 -11.24054 -11.06251 -10.76565 -10.57903 -10.16894 -9.94451 -9.78558 -9.64527 -9.47234 -9.20963 -8.56402 -7.33433 -6.03818 -4.00620 3.28253 3.36318 3.37235 3.97424 4.42528 4.43450 4.70094 4.77065 5.00763 5.15937 5.28452 5.45642 5.55971 5.73006 5.79740 5.89647 6.03360 6.09028 6.16097 6.22784 6.35825 6.68960 6.80294 6.90988 7.02998 7.05098 7.60125 7.84347 7.98429 8.10746 8.67867 9.06411 9.57761 11.09316 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033337 B = 0.010487 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.704510 B = 2669.280090 C = 3216.458383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.058 3.942 3 N -0.495 5.495 4 C 0.155 3.845 5 C -0.506 4.506 6 H 0.082 0.918 7 C 0.068 3.932 8 N -0.900 5.900 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.267 1.267 12 H -0.285 1.285 13 C 0.055 3.945 14 H 0.056 0.944 15 C 0.052 3.948 16 O -0.381 6.381 17 C 0.017 3.983 18 C 0.081 3.919 19 H 0.063 0.937 20 O -0.518 6.518 21 H 0.038 0.962 22 H 0.038 0.962 23 H 0.077 0.923 24 H 0.013 0.987 25 H 0.090 0.910 26 H 0.032 0.968 27 H -0.019 1.019 28 H 0.263 0.737 29 H 0.080 0.920 30 H 0.091 0.909 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.360 0.640 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.937 3.008 -11.563 14.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.070 4.070 3 N -0.220 5.220 4 C 0.029 3.971 5 C -0.544 4.544 6 H 0.100 0.900 7 C -0.134 4.134 8 N -0.539 5.539 9 Si 0.701 3.299 10 H -0.204 1.204 11 H -0.192 1.192 12 H -0.211 1.211 13 C -0.055 4.055 14 H 0.073 0.927 15 C -0.024 4.024 16 O -0.300 6.300 17 C -0.061 4.061 18 C 0.020 3.980 19 H 0.081 0.919 20 O -0.320 6.320 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.095 0.905 24 H 0.031 0.969 25 H 0.109 0.891 26 H 0.050 0.950 27 H -0.001 1.001 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.109 0.891 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges -8.380 3.197 -11.017 14.206 hybrid contribution 0.777 -0.189 -1.141 1.393 sum -7.603 3.008 -12.158 14.651 Atomic orbital electron populations 1.21922 0.96019 0.99821 1.01787 1.22033 0.95042 0.89136 1.00800 1.61945 1.21417 1.16980 1.21686 1.20316 0.83505 0.96225 0.97034 1.21017 0.95008 1.44194 0.94159 0.89964 1.24898 0.98637 0.95023 0.94797 1.69898 1.24336 1.48356 1.11312 0.86891 0.83498 0.79244 0.80269 1.20387 1.19208 1.21117 1.23213 0.92774 0.96176 0.93381 0.92681 1.23770 0.95660 0.90555 0.92448 1.88830 1.16814 1.70847 1.53498 1.24001 0.84402 0.97252 1.00460 1.23123 0.94678 0.94455 0.85707 0.91877 1.86996 1.27592 1.90430 1.26990 0.94333 0.94339 0.90453 0.96908 0.89126 0.94998 1.00094 0.92690 0.90166 0.89077 0.91683 0.90154 0.79489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.23 8.39 37.16 0.31 -1.92 16 2 C 0.06 1.14 5.53 -3.83 -0.02 1.11 16 3 N -0.50 -10.45 3.78 -225.68 -0.85 -11.30 16 4 C 0.16 3.77 3.47 -4.97 -0.02 3.75 16 5 C -0.51 -14.42 8.82 -34.44 -0.30 -14.73 16 6 H 0.08 2.57 7.52 -52.48 -0.39 2.18 16 7 C 0.07 1.97 5.47 -17.82 -0.10 1.87 16 8 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 9 Si 0.87 21.56 27.47 -169.99 -4.67 16.89 16 10 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 11 H -0.27 -6.30 6.54 56.52 0.37 -5.93 16 12 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 13 C 0.05 0.96 2.84 -65.70 -0.19 0.77 16 14 H 0.06 0.94 7.85 -51.93 -0.41 0.53 16 15 C 0.05 0.92 5.57 38.21 0.21 1.13 16 16 O -0.38 -6.27 11.52 -35.23 -0.41 -6.68 16 17 C 0.02 0.22 7.52 37.76 0.28 0.50 16 18 C 0.08 1.14 2.97 -25.17 -0.07 1.06 16 19 H 0.06 0.77 6.96 -51.93 -0.36 0.41 16 20 O -0.52 -7.59 9.58 -35.23 -0.34 -7.93 16 21 H 0.04 0.55 5.41 -51.93 -0.28 0.27 16 22 H 0.04 0.56 8.14 -51.93 -0.42 0.13 16 23 H 0.08 1.35 6.83 -51.93 -0.35 1.00 16 24 H 0.01 0.24 7.83 -51.93 -0.41 -0.17 16 25 H 0.09 2.02 6.58 -51.93 -0.34 1.68 16 26 H 0.03 0.78 5.02 -51.93 -0.26 0.52 16 27 H -0.02 -0.45 7.55 -51.93 -0.39 -0.84 16 28 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 29 H 0.08 1.55 7.62 -51.93 -0.40 1.15 16 30 H 0.09 1.57 7.95 -51.93 -0.41 1.16 16 31 H 0.07 0.81 7.97 -51.93 -0.41 0.40 16 32 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.36 3.43 9.12 45.56 0.42 3.84 16 LS Contribution 256.42 15.07 3.86 3.86 Total: -1.00 -31.91 256.42 -5.54 -37.45 By element: Atomic # 1 Polarization: 5.06 SS G_CDS: -4.02 Total: 1.04 kcal Atomic # 6 Polarization: -6.54 SS G_CDS: 0.11 Total: -6.43 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.08 Total: -38.21 kcal Atomic # 8 Polarization: -13.86 SS G_CDS: -0.74 Total: -14.61 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.67 Total: 16.89 kcal Total LS contribution 3.86 Total: 3.86 kcal Total: -31.91 -5.54 -37.45 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308172582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.632 kcal (2) G-P(sol) polarization free energy of solvation -31.912 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.537 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.449 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds