Wall clock time and date at job start Mon Mar 30 2020 03:28:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46892 * 109.46791 * 2 1 4 4 C 1.46904 * 111.00114 * 162.75708 * 3 2 1 5 5 C 1.50701 * 109.46643 * 293.94813 * 4 3 2 6 6 H 1.08004 * 120.00347 * 0.02562 * 5 4 3 7 7 C 1.37877 * 119.99775 * 179.97438 * 5 4 3 8 8 N 1.31520 * 119.99653 * 180.02562 * 7 5 4 9 9 Si 1.86795 * 120.00227 * 359.97438 * 7 5 4 10 10 H 1.48497 * 109.47514 * 270.00107 * 9 7 5 11 11 H 1.48501 * 109.46829 * 30.00589 * 9 7 5 12 12 H 1.48506 * 109.47290 * 149.99683 * 9 7 5 13 13 C 1.46902 * 111.00040 * 286.70639 * 3 2 1 14 14 H 1.09003 * 110.80165 * 315.24425 * 13 3 2 15 15 C 1.54996 * 110.90956 * 191.61478 * 13 3 2 16 16 O 1.44382 * 103.49104 * 204.77973 * 15 13 3 17 17 C 1.43742 * 106.97593 * 40.05824 * 16 15 13 18 18 C 1.54159 * 107.29955 * 333.45979 * 17 16 15 19 19 H 1.09002 * 110.51987 * 243.39727 * 18 17 16 20 20 O 1.42897 * 110.48280 * 120.73168 * 18 17 16 21 21 H 1.08999 * 109.47168 * 70.00473 * 1 2 3 22 22 H 1.09001 * 109.47307 * 190.00263 * 1 2 3 23 23 H 1.08994 * 109.47246 * 310.00248 * 1 2 3 24 24 H 1.08994 * 109.47073 * 239.99890 * 2 1 3 25 25 H 1.09005 * 109.46810 * 119.99746 * 2 1 3 26 26 H 1.08994 * 109.47414 * 173.95283 * 4 3 2 27 27 H 1.08999 * 109.47310 * 53.94527 * 4 3 2 28 28 H 0.97005 * 119.99449 * 180.02562 * 8 7 5 29 29 H 1.09002 * 110.61831 * 323.27763 * 15 13 3 30 30 H 1.08996 * 110.61978 * 86.11923 * 15 13 3 31 31 H 1.09001 * 109.87703 * 92.91410 * 17 16 15 32 32 H 1.08994 * 109.87753 * 213.91218 * 17 16 15 33 33 H 0.96688 * 114.00161 * 65.27276 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 3.4300 1.4448 0.4065 5 6 3.5559 1.0201 1.8470 6 1 2.6763 0.7339 2.4045 7 6 4.7943 0.9959 2.4528 8 7 4.9042 0.6247 3.7097 9 14 6.3159 1.4887 1.4879 10 1 6.8919 0.2908 0.8259 11 1 5.9455 2.4931 0.4587 12 1 7.3200 2.0744 2.4121 13 6 1.8234 2.0127 -1.3136 14 1 2.1241 1.3370 -2.1143 15 6 2.5917 3.3557 -1.4052 16 8 1.8629 4.0929 -2.4101 17 6 0.4658 3.8396 -2.1857 18 6 0.3542 2.4656 -1.4955 19 1 -0.1861 1.7624 -2.1293 20 8 -0.2903 2.5943 -0.2266 21 1 -0.3633 0.3514 -0.9657 22 1 -0.3634 -1.0120 0.1785 23 1 -0.3633 0.6606 0.7872 24 1 1.8934 -0.5138 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 3.7973 2.4649 0.2951 27 1 4.0181 0.7762 -0.2221 28 1 5.7754 0.6081 4.1360 29 1 2.5644 3.8795 -0.4497 30 1 3.6216 3.1880 -1.7203 31 1 0.0477 4.6133 -1.5418 32 1 -0.0653 3.8225 -3.1373 33 1 -1.2137 2.8759 -0.2813 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308172582.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:44 Heat of formation + Delta-G solvation = -100.481606 kcal Electronic energy + Delta-G solvation = -15560.780422 eV Core-core repulsion = 13007.247052 eV Total energy + Delta-G solvation = -2553.533370 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.99454 -37.93717 -36.87285 -34.67160 -32.13052 -31.16660 -29.52957 -27.93699 -24.48901 -23.50261 -22.44371 -20.95110 -19.04486 -18.66553 -17.40121 -16.68165 -16.36384 -16.31977 -15.77141 -15.31707 -14.97169 -14.51997 -14.31236 -13.98768 -13.70545 -13.27342 -12.79942 -12.71606 -12.56414 -12.54483 -12.22009 -11.81985 -11.63106 -11.30298 -11.29565 -10.83044 -10.75596 -10.62882 -8.96425 -8.28143 -6.30745 1.32894 1.35038 1.45381 2.33571 2.71817 3.04116 3.26624 3.42821 3.60185 3.77992 4.06683 4.20399 4.29646 4.38696 4.59810 4.68336 4.72048 4.75502 4.81314 4.89152 4.90768 4.96234 5.09011 5.34071 5.53156 5.64915 5.75227 6.01332 6.41722 6.65655 6.75983 7.12636 7.32116 8.88641 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.033337 B = 0.010487 C = 0.008703 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.704510 B = 2669.280090 C = 3216.458383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.057 3.943 3 N -0.510 5.510 4 C 0.165 3.835 5 C -0.511 4.511 6 H 0.036 0.964 7 C 0.007 3.993 8 N -0.948 5.948 9 Si 0.944 3.056 10 H -0.267 1.267 11 H -0.248 1.248 12 H -0.281 1.281 13 C 0.044 3.956 14 H 0.066 0.934 15 C 0.055 3.945 16 O -0.391 6.391 17 C 0.014 3.986 18 C 0.089 3.911 19 H 0.093 0.907 20 O -0.544 6.544 21 H 0.065 0.935 22 H 0.053 0.947 23 H 0.061 0.939 24 H 0.025 0.975 25 H 0.049 0.951 26 H 0.034 0.966 27 H -0.017 1.017 28 H 0.266 0.734 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.070 0.930 32 H 0.116 0.884 33 H 0.383 0.617 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.551 3.631 -14.218 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.071 4.071 3 N -0.235 5.235 4 C 0.038 3.962 5 C -0.550 4.550 6 H 0.055 0.945 7 C -0.190 4.190 8 N -0.589 5.589 9 Si 0.768 3.232 10 H -0.192 1.192 11 H -0.171 1.171 12 H -0.206 1.206 13 C -0.065 4.065 14 H 0.084 0.916 15 C -0.022 4.022 16 O -0.310 6.310 17 C -0.062 4.062 18 C 0.029 3.971 19 H 0.111 0.889 20 O -0.350 6.350 21 H 0.083 0.917 22 H 0.072 0.928 23 H 0.080 0.920 24 H 0.043 0.957 25 H 0.068 0.932 26 H 0.052 0.948 27 H 0.000 1.000 28 H 0.075 0.925 29 H 0.074 0.926 30 H 0.110 0.890 31 H 0.088 0.912 32 H 0.134 0.866 33 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -9.043 3.829 -13.694 16.851 hybrid contribution 0.836 -0.393 -0.278 0.965 sum -8.207 3.436 -13.972 16.565 Atomic orbital electron populations 1.21792 0.93047 1.00608 1.02710 1.22029 0.97467 0.88293 0.99338 1.61856 1.19091 1.17978 1.24564 1.20059 0.86031 0.95846 0.94229 1.21228 0.93656 1.43850 0.96239 0.94538 1.25840 1.02386 0.94976 0.95799 1.70057 1.25430 1.50035 1.13391 0.85758 0.78750 0.79626 0.79107 1.19250 1.17148 1.20647 1.23402 0.95770 0.95872 0.91504 0.91611 1.23593 0.96207 0.90590 0.91789 1.88818 1.18558 1.70790 1.52802 1.24232 0.82891 0.96733 1.02385 1.23092 0.92595 0.95507 0.85905 0.88903 1.86942 1.29654 1.90735 1.27670 0.91658 0.92799 0.92000 0.95666 0.93229 0.94776 0.99965 0.92472 0.92573 0.89028 0.91198 0.86634 0.76803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.79 8.39 71.98 0.60 -3.19 16 2 C 0.06 2.20 5.53 86.31 0.48 2.68 16 3 N -0.51 -21.31 3.78 -867.92 -3.28 -24.59 16 4 C 0.17 8.05 3.47 85.56 0.30 8.35 16 5 C -0.51 -30.21 8.82 25.60 0.23 -29.99 16 6 H 0.04 2.42 7.52 -2.91 -0.02 2.40 16 7 C 0.01 0.42 5.47 84.65 0.46 0.88 16 8 N -0.95 -60.24 13.96 21.45 0.30 -59.94 16 9 Si 0.94 44.59 27.47 68.60 1.88 46.47 16 10 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.25 -10.83 6.54 99.48 0.65 -10.18 16 12 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 13 C 0.04 1.45 2.84 46.22 0.13 1.58 16 14 H 0.07 2.05 7.85 -2.39 -0.02 2.03 16 15 C 0.05 1.86 5.57 72.67 0.40 2.26 16 16 O -0.39 -11.82 11.52 -148.98 -1.72 -13.54 16 17 C 0.01 0.32 7.52 72.37 0.54 0.87 16 18 C 0.09 2.20 2.97 31.61 0.09 2.30 16 19 H 0.09 1.78 6.96 -2.39 -0.02 1.76 16 20 O -0.54 -14.61 9.58 -148.98 -1.43 -16.04 16 21 H 0.06 1.63 5.41 -2.39 -0.01 1.61 16 22 H 0.05 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 2.10 6.83 -2.39 -0.02 2.08 16 24 H 0.03 0.90 7.83 -2.39 -0.02 0.89 16 25 H 0.05 2.31 6.58 -2.38 -0.02 2.29 16 26 H 0.03 1.65 5.02 -2.39 -0.01 1.64 16 27 H -0.02 -0.83 7.55 -2.39 -0.02 -0.85 16 28 H 0.27 15.75 8.31 -92.70 -0.77 14.98 16 29 H 0.06 2.15 7.62 -2.39 -0.02 2.13 16 30 H 0.09 3.02 7.95 -2.39 -0.02 3.00 16 31 H 0.07 1.52 7.97 -2.39 -0.02 1.50 16 32 H 0.12 1.82 8.14 -2.39 -0.02 1.81 16 33 H 0.38 6.12 9.12 -74.06 -0.68 5.44 16 Total: -1.00 -70.99 256.42 -0.62 -71.61 By element: Atomic # 1 Polarization: 9.90 SS G_CDS: 0.37 Total: 10.27 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: 3.24 Total: -14.25 kcal Atomic # 7 Polarization: -81.55 SS G_CDS: -2.98 Total: -84.53 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -3.14 Total: -29.58 kcal Atomic # 14 Polarization: 44.59 SS G_CDS: 1.88 Total: 46.47 kcal Total: -70.99 -0.62 -71.61 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308172582.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.870 kcal (2) G-P(sol) polarization free energy of solvation -70.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds