Wall clock time and date at job start Mon Mar 30 2020 03:28:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46894 * 109.47080 * 2 1 4 4 C 1.46903 * 111.00120 * 194.41085 * 3 2 1 5 5 C 1.50697 * 109.46915 * 66.04566 * 4 3 2 6 6 H 1.08004 * 120.00274 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00275 * 180.02562 * 5 4 3 8 8 N 1.31520 * 119.99707 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00207 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47218 * 59.99781 * 9 7 5 11 11 H 1.48502 * 109.46754 * 299.99339 * 9 7 5 12 12 H 1.48499 * 109.47132 * 179.97438 * 9 7 5 13 13 C 1.46906 * 110.99913 * 70.45886 * 3 2 1 14 14 H 1.08995 * 110.45828 * 310.56022 * 13 3 2 15 15 C 1.54484 * 110.51114 * 187.80399 * 13 3 2 16 16 O 1.44421 * 104.80253 * 217.37897 * 15 13 3 17 17 C 1.44430 * 105.27896 * 40.51324 * 16 15 13 18 18 C 1.54482 * 104.79871 * 319.48780 * 17 16 15 19 19 H 1.08998 * 110.50952 * 142.62454 * 18 17 16 20 20 O 1.42896 * 110.62907 * 265.27551 * 18 17 16 21 21 H 1.08994 * 109.47102 * 174.73539 * 1 2 3 22 22 H 1.08996 * 109.47351 * 294.74624 * 1 2 3 23 23 H 1.09000 * 109.46973 * 54.74349 * 1 2 3 24 24 H 1.09003 * 109.46937 * 239.99835 * 2 1 3 25 25 H 1.09001 * 109.46800 * 120.00361 * 2 1 3 26 26 H 1.09004 * 109.46653 * 306.05220 * 4 3 2 27 27 H 1.08999 * 109.47331 * 186.04875 * 4 3 2 28 28 H 0.97004 * 119.99875 * 0.02562 * 8 7 5 29 29 H 1.09004 * 110.36750 * 336.20876 * 15 13 3 30 30 H 1.08995 * 110.36753 * 98.54566 * 15 13 3 31 31 H 1.08996 * 110.36803 * 200.65958 * 17 16 15 32 32 H 1.08999 * 110.37059 * 78.31709 * 17 16 15 33 33 H 0.96704 * 114.00003 * 294.70901 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 3.4475 1.4386 -0.3413 5 6 3.6403 0.9901 -1.7670 6 1 2.7875 0.6952 -2.3605 7 6 4.9055 0.9563 -2.3140 8 7 5.9440 1.3159 -1.5916 9 14 5.1443 0.4011 -4.0815 10 1 4.3850 1.2982 -4.9891 11 1 4.6503 -0.9910 -4.2341 12 1 6.5877 0.4552 -4.4266 13 6 1.7627 2.0342 1.2925 14 1 0.7250 1.8883 1.5924 15 6 2.1015 3.5396 1.2189 16 8 2.6791 3.8511 2.5054 17 6 3.5253 2.7252 2.8254 18 6 2.7209 1.4861 2.3736 19 1 3.3852 0.7335 1.9492 20 8 1.9814 0.9397 3.4675 21 1 -0.3633 -1.0233 -0.0943 22 1 -0.3634 0.4302 0.9332 23 1 -0.3633 0.5932 -0.8392 24 1 1.8934 -0.5139 -0.8900 25 1 1.8934 -0.5139 0.8900 26 1 4.0053 0.7805 0.3251 27 1 3.8097 2.4605 -0.2297 28 1 5.8199 1.6045 -0.6739 29 1 2.8227 3.7277 0.4235 30 1 1.1962 4.1248 1.0577 31 1 3.7135 2.6850 3.8982 32 1 4.4648 2.7886 2.2764 33 1 2.5338 0.5811 4.1756 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308172587.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:28:50 Heat of formation + Delta-G solvation = -114.547733 kcal Electronic energy + Delta-G solvation = -15558.749980 eV Core-core repulsion = 13004.606657 eV Total energy + Delta-G solvation = -2554.143323 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.35723 -38.00372 -37.12348 -35.04637 -32.21687 -30.43289 -29.75929 -27.38758 -24.84663 -23.78962 -23.49329 -20.71654 -19.20405 -18.38243 -17.77229 -17.29470 -16.62460 -15.86107 -15.59769 -15.51874 -15.22944 -14.73886 -14.16499 -13.94187 -13.55645 -13.33175 -13.26483 -12.78376 -12.63803 -12.43703 -12.35517 -12.05743 -11.92265 -11.61851 -11.26315 -10.87793 -10.66683 -10.54100 -9.21059 -8.68210 -6.38545 1.53886 1.61408 1.80817 2.53773 2.73181 2.98020 3.10610 3.15245 3.57378 3.68644 3.85905 4.02127 4.20666 4.27827 4.41465 4.43365 4.57552 4.61053 4.66912 4.70550 4.84968 4.99649 5.01027 5.17861 5.33695 5.48447 5.78316 5.96637 6.30273 6.39515 6.59559 6.68511 7.40180 8.70895 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.031823 B = 0.009972 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.661457 B = 2807.117072 C = 3255.479486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.056 3.944 3 N -0.519 5.519 4 C 0.189 3.811 5 C -0.600 4.600 6 H 0.055 0.945 7 C -0.034 4.034 8 N -0.936 5.936 9 Si 1.117 2.883 10 H -0.271 1.271 11 H -0.269 1.269 12 H -0.285 1.285 13 C 0.056 3.944 14 H 0.109 0.891 15 C 0.052 3.948 16 O -0.382 6.382 17 C 0.019 3.981 18 C 0.043 3.957 19 H 0.057 0.943 20 O -0.561 6.561 21 H 0.073 0.927 22 H 0.055 0.945 23 H 0.058 0.942 24 H 0.064 0.936 25 H 0.020 0.980 26 H -0.034 1.034 27 H 0.009 0.991 28 H 0.254 0.746 29 H 0.053 0.947 30 H 0.117 0.883 31 H 0.123 0.877 32 H 0.053 0.947 33 H 0.394 0.606 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.529 -1.068 6.965 10.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.072 4.072 3 N -0.243 5.243 4 C 0.063 3.937 5 C -0.638 4.638 6 H 0.073 0.927 7 C -0.232 4.232 8 N -0.574 5.574 9 Si 0.939 3.061 10 H -0.196 1.196 11 H -0.195 1.195 12 H -0.210 1.210 13 C -0.054 4.054 14 H 0.126 0.874 15 C -0.025 4.025 16 O -0.301 6.301 17 C -0.058 4.058 18 C -0.018 4.018 19 H 0.074 0.926 20 O -0.369 6.369 21 H 0.092 0.908 22 H 0.074 0.926 23 H 0.077 0.923 24 H 0.082 0.918 25 H 0.038 0.962 26 H -0.017 1.017 27 H 0.027 0.973 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.135 0.865 31 H 0.140 0.860 32 H 0.072 0.928 33 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -7.204 -0.682 5.209 8.916 hybrid contribution 0.258 -0.448 2.125 2.187 sum -6.946 -1.130 7.335 10.165 Atomic orbital electron populations 1.21698 0.93135 1.02308 1.01891 1.22016 0.96948 0.88394 0.99854 1.62256 1.18377 1.17773 1.25914 1.19651 0.84330 0.94330 0.95374 1.22285 0.95484 1.47715 0.98329 0.92686 1.27302 0.92012 0.94496 1.09342 1.70944 1.32859 1.43430 1.10163 0.82917 0.76088 0.77112 0.70006 1.19624 1.19457 1.21046 1.23192 1.00500 0.94527 0.87182 0.87359 1.23532 0.99316 0.94217 0.85390 1.89060 1.62991 1.41586 1.36435 1.24147 0.93237 0.85489 1.02914 1.23798 0.94243 0.95032 0.88755 0.92564 1.86493 1.37724 1.80500 1.32141 0.90776 0.92627 0.92295 0.91753 0.96165 1.01665 0.97301 0.93714 0.92917 0.86494 0.85954 0.92848 0.75619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.00 9.85 71.98 0.71 -3.29 16 2 C 0.06 2.14 5.39 86.31 0.47 2.61 16 3 N -0.52 -21.91 4.46 -869.55 -3.88 -25.79 16 4 C 0.19 9.57 3.17 85.56 0.27 9.84 16 5 C -0.60 -33.42 8.30 25.60 0.21 -33.20 16 6 H 0.05 3.05 7.24 -2.91 -0.02 3.03 16 7 C -0.03 -1.91 5.46 84.65 0.46 -1.45 16 8 N -0.94 -56.60 13.65 21.45 0.29 -56.30 16 9 Si 1.12 49.58 29.90 68.60 2.05 51.63 16 10 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 11 H -0.27 -11.07 7.11 99.48 0.71 -10.36 16 12 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 13 C 0.06 2.03 2.87 45.93 0.13 2.16 16 14 H 0.11 3.73 6.33 -2.39 -0.02 3.71 16 15 C 0.05 1.87 7.10 72.49 0.51 2.38 16 16 O -0.38 -13.57 11.65 -148.98 -1.74 -15.30 16 17 C 0.02 0.62 7.38 72.49 0.54 1.15 16 18 C 0.04 1.46 2.98 31.61 0.09 1.55 16 19 H 0.06 2.17 5.43 -2.39 -0.01 2.16 16 20 O -0.56 -16.15 13.30 -148.98 -1.98 -18.13 16 21 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 22 H 0.05 1.58 6.76 -2.39 -0.02 1.56 16 23 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 24 H 0.06 2.76 6.60 -2.39 -0.02 2.75 16 25 H 0.02 0.78 7.11 -2.39 -0.02 0.76 16 26 H -0.03 -1.82 6.14 -2.39 -0.01 -1.83 16 27 H 0.01 0.49 5.82 -2.39 -0.01 0.48 16 28 H 0.25 15.45 7.22 -92.71 -0.67 14.78 16 29 H 0.05 2.16 5.98 -2.39 -0.01 2.14 16 30 H 0.12 3.58 8.14 -2.39 -0.02 3.56 16 31 H 0.12 3.07 8.09 -2.39 -0.02 3.05 16 32 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 33 H 0.39 7.41 9.12 -74.05 -0.68 6.73 16 Total: -1.00 -65.38 261.21 -1.32 -66.70 By element: Atomic # 1 Polarization: 14.91 SS G_CDS: 0.54 Total: 15.45 kcal Atomic # 6 Polarization: -21.65 SS G_CDS: 3.40 Total: -18.25 kcal Atomic # 7 Polarization: -78.51 SS G_CDS: -3.59 Total: -82.10 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -3.72 Total: -33.43 kcal Atomic # 14 Polarization: 49.58 SS G_CDS: 2.05 Total: 51.63 kcal Total: -65.38 -1.32 -66.70 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308172587.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.851 kcal (2) G-P(sol) polarization free energy of solvation -65.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds