Wall clock time and date at job start Mon Mar 30 2020 03:03:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47276 * 2 1 4 4 N 1.46504 * 109.47410 * 180.02562 * 3 2 1 5 5 C 1.36927 * 120.00276 * 85.08330 * 4 3 2 6 6 H 1.07999 * 120.00300 * 207.99015 * 5 4 3 7 7 C 1.38815 * 120.00159 * 27.98423 * 5 4 3 8 8 N 1.31623 * 119.99526 * 41.17627 * 7 5 4 9 9 Si 1.86795 * 120.00548 * 221.44829 * 7 5 4 10 10 H 1.48497 * 109.47185 * 179.72650 * 9 7 5 11 11 H 1.48501 * 109.46912 * 299.72748 * 9 7 5 12 12 H 1.48503 * 109.47063 * 59.72450 * 9 7 5 13 13 C 1.46504 * 119.99832 * 265.08611 * 4 3 2 14 14 H 1.09006 * 110.45368 * 357.39183 * 13 4 3 15 15 C 1.54474 * 110.51183 * 234.64278 * 13 4 3 16 16 O 1.44431 * 104.80195 * 217.37848 * 15 13 4 17 17 C 1.44427 * 105.27583 * 40.50525 * 16 15 13 18 18 C 1.54480 * 104.80645 * 319.49457 * 17 16 15 19 19 H 1.09000 * 110.50666 * 265.33370 * 18 17 16 20 20 O 1.42895 * 110.51390 * 142.62118 * 18 17 16 21 21 H 1.08996 * 109.47378 * 59.99555 * 1 2 3 22 22 H 1.09005 * 109.47335 * 179.97438 * 1 2 3 23 23 H 1.09005 * 109.47081 * 299.99911 * 1 2 3 24 24 H 1.09005 * 109.47081 * 240.00089 * 2 1 3 25 25 H 1.08996 * 109.47378 * 120.00445 * 2 1 3 26 26 H 1.09004 * 109.47125 * 60.00574 * 3 2 1 27 27 H 1.08996 * 109.47280 * 300.00505 * 3 2 1 28 28 H 0.97000 * 119.99981 * 6.11734 * 8 7 5 29 29 H 1.08997 * 110.36828 * 336.20325 * 15 13 4 30 30 H 1.08997 * 110.37394 * 98.54351 * 15 13 4 31 31 H 1.08995 * 110.37113 * 200.65795 * 17 16 15 32 32 H 1.09008 * 110.46224 * 78.36801 * 17 16 15 33 33 H 0.96703 * 114.00285 * 65.35653 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1892 1.3410 -1.1823 6 1 5.1745 0.8991 -1.1997 7 6 3.6165 1.8062 -2.3582 8 7 2.9505 2.9415 -2.3615 9 14 3.7843 0.8173 -3.9340 10 1 3.0834 1.5217 -5.0374 11 1 5.2221 0.6699 -4.2750 12 1 3.1809 -0.5260 -3.7420 13 6 4.2380 1.5510 1.2632 14 1 3.5452 1.6691 2.0965 15 6 5.2337 2.7309 1.2119 16 8 6.3953 2.2652 1.9327 17 6 6.5671 0.8891 1.5292 18 6 5.1354 0.3114 1.4767 19 1 4.8879 -0.1819 2.4167 20 8 5.0020 -0.5978 0.3824 21 1 -0.3634 0.5139 -0.8899 22 1 -0.3634 -1.0277 -0.0005 23 1 -0.3633 0.5138 0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 1.6767 1.9563 0.8901 27 1 1.6766 1.9563 -0.8899 28 1 2.9345 3.4967 -1.5662 29 1 5.4954 2.9619 0.1793 30 1 4.8092 3.6072 1.7018 31 1 7.1670 0.3506 2.2628 32 1 7.0340 0.8359 0.5456 33 1 5.5439 -1.3944 0.4646 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308184074.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:03:35 Heat of formation + Delta-G solvation = -90.269113 kcal Electronic energy + Delta-G solvation = -15816.742751 eV Core-core repulsion = 13263.652228 eV Total energy + Delta-G solvation = -2553.090523 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.66910 -37.64679 -36.75407 -34.16672 -33.13380 -30.09424 -29.17292 -27.18900 -24.77978 -23.63033 -22.02118 -21.41826 -18.98963 -18.53136 -17.26668 -16.47002 -16.19529 -15.82093 -15.59628 -15.50949 -15.00068 -14.47061 -14.00056 -13.83438 -13.42952 -12.93926 -12.69755 -12.51938 -12.47911 -12.16390 -11.98692 -11.92380 -11.68504 -11.43437 -11.28635 -10.96401 -10.51646 -10.17368 -8.75070 -8.11018 -5.11554 1.58803 1.65029 1.84193 2.67066 2.93923 3.19154 3.54532 3.73248 3.80174 3.99531 4.17053 4.26314 4.36115 4.46427 4.56725 4.65798 4.75934 4.79384 4.85576 4.92643 5.02881 5.03774 5.21497 5.26201 5.50865 5.67007 5.75622 6.26160 6.51727 7.05286 7.26082 7.95697 8.38024 9.05820 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.023610 B = 0.014103 C = 0.011393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1185.636296 B = 1984.932904 C = 2457.118940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.117 4.117 3 C 0.139 3.861 4 N -0.576 5.576 5 C -0.307 4.307 6 H 0.048 0.952 7 C -0.071 4.071 8 N -0.919 5.919 9 Si 1.081 2.919 10 H -0.299 1.299 11 H -0.284 1.284 12 H -0.290 1.290 13 C 0.135 3.865 14 H 0.084 0.916 15 C 0.039 3.961 16 O -0.391 6.391 17 C 0.021 3.979 18 C 0.061 3.939 19 H 0.080 0.920 20 O -0.535 6.535 21 H 0.040 0.960 22 H 0.063 0.937 23 H 0.061 0.939 24 H 0.031 0.969 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.252 0.748 29 H 0.041 0.959 30 H 0.090 0.910 31 H 0.117 0.883 32 H 0.047 0.953 33 H 0.369 0.631 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.411 -6.604 8.609 10.941 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.157 4.157 3 C 0.013 3.987 4 N -0.296 5.296 5 C -0.437 4.437 6 H 0.066 0.934 7 C -0.270 4.270 8 N -0.560 5.560 9 Si 0.909 3.091 10 H -0.225 1.225 11 H -0.210 1.210 12 H -0.217 1.217 13 C 0.027 3.973 14 H 0.102 0.898 15 C -0.039 4.039 16 O -0.310 6.310 17 C -0.056 4.056 18 C -0.001 4.001 19 H 0.097 0.903 20 O -0.339 6.339 21 H 0.060 0.940 22 H 0.082 0.918 23 H 0.080 0.920 24 H 0.050 0.950 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.059 0.941 28 H 0.061 0.939 29 H 0.059 0.941 30 H 0.108 0.892 31 H 0.135 0.865 32 H 0.065 0.935 33 H 0.216 0.784 Dipole moment (debyes) X Y Z Total from point charges 0.686 -6.085 6.951 9.264 hybrid contribution 0.875 -0.218 1.370 1.640 sum 1.562 -6.303 8.321 10.555 Atomic orbital electron populations 1.21678 0.95045 1.01736 1.01374 1.21738 0.95394 0.98500 1.00079 1.20992 0.83255 0.95269 0.99221 1.43875 1.00705 1.83772 1.01238 1.19650 1.03662 1.34186 0.86175 0.93415 1.26408 1.01148 0.96540 1.02874 1.70921 1.47449 1.08158 1.29476 0.83293 0.76153 0.75488 0.74160 1.22545 1.20991 1.21741 1.22000 0.93320 0.92157 0.89868 0.89802 1.23840 0.85828 0.98411 0.95866 1.88990 1.48376 1.27013 1.66632 1.24201 0.98075 0.82823 1.00536 1.23563 0.94577 0.91987 0.89965 0.90253 1.87119 1.69355 1.33583 1.43867 0.94049 0.91794 0.91956 0.95025 0.93078 0.94114 0.94111 0.93900 0.94074 0.89174 0.86526 0.93470 0.78417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.91 71.98 0.71 -3.81 16 2 C -0.12 -4.69 6.23 30.59 0.19 -4.50 16 3 C 0.14 6.27 5.18 86.38 0.45 6.72 16 4 N -0.58 -27.27 2.07 -672.40 -1.39 -28.66 16 5 C -0.31 -16.50 6.65 84.04 0.56 -15.94 16 6 H 0.05 2.70 6.70 -2.91 -0.02 2.68 16 7 C -0.07 -4.02 4.53 84.86 0.38 -3.64 16 8 N -0.92 -55.08 12.16 21.65 0.26 -54.81 16 9 Si 1.08 52.39 30.06 68.60 2.06 54.46 16 10 H -0.30 -14.79 7.11 99.48 0.71 -14.08 16 11 H -0.28 -13.05 7.11 99.48 0.71 -12.35 16 12 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 13 C 0.14 5.38 3.66 46.01 0.17 5.55 16 14 H 0.08 3.03 7.78 -2.38 -0.02 3.01 16 15 C 0.04 1.58 7.22 72.48 0.52 2.10 16 16 O -0.39 -14.63 11.65 -148.98 -1.74 -16.36 16 17 C 0.02 0.66 7.38 72.49 0.53 1.20 16 18 C 0.06 2.06 4.33 31.61 0.14 2.19 16 19 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 20 O -0.54 -19.72 10.14 -148.98 -1.51 -21.23 16 21 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 22 H 0.06 1.78 8.14 -2.38 -0.02 1.76 16 23 H 0.06 1.77 8.14 -2.38 -0.02 1.75 16 24 H 0.03 1.44 8.14 -2.38 -0.02 1.42 16 25 H 0.05 1.93 8.14 -2.39 -0.02 1.91 16 26 H 0.04 1.67 7.83 -2.38 -0.02 1.65 16 27 H 0.04 2.15 5.59 -2.39 -0.01 2.14 16 28 H 0.25 15.34 8.07 -92.71 -0.75 14.59 16 29 H 0.04 2.00 6.95 -2.39 -0.02 1.98 16 30 H 0.09 3.35 8.14 -2.39 -0.02 3.33 16 31 H 0.12 2.81 8.14 -2.39 -0.02 2.79 16 32 H 0.05 1.68 8.08 -2.38 -0.02 1.66 16 33 H 0.37 9.62 9.12 -74.06 -0.68 8.95 16 Total: -1.00 -64.71 267.74 1.78 -62.93 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 0.44 Total: 13.81 kcal Atomic # 6 Polarization: -13.79 SS G_CDS: 3.66 Total: -10.13 kcal Atomic # 7 Polarization: -82.35 SS G_CDS: -1.13 Total: -83.47 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -3.25 Total: -37.60 kcal Atomic # 14 Polarization: 52.39 SS G_CDS: 2.06 Total: 54.46 kcal Total: -64.71 1.78 -62.93 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308184074.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.343 kcal (2) G-P(sol) polarization free energy of solvation -64.710 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.784 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.926 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds