Wall clock time and date at job start Mon Mar 30 2020 02:33:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99857 * 2 1 4 4 H 1.48499 * 109.47128 * 264.47473 * 3 2 1 5 5 H 1.48491 * 109.47314 * 24.47724 * 3 2 1 6 6 H 1.48501 * 109.46954 * 144.47642 * 3 2 1 7 7 C 1.37878 * 120.00161 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99751 * 352.48365 * 7 2 1 9 9 C 1.50695 * 120.00125 * 172.76260 * 7 2 1 10 10 C 1.52998 * 115.55126 * 294.73961 * 9 7 2 11 11 O 1.42900 * 109.47334 * 305.48751 * 10 9 7 12 12 C 1.42900 * 114.00324 * 184.36594 * 11 10 9 13 13 C 1.53002 * 109.47082 * 184.06586 * 12 11 10 14 14 H 1.08998 * 109.47394 * 295.10119 * 13 12 11 15 15 N 1.46903 * 109.47002 * 55.09750 * 13 12 11 16 16 C 1.52994 * 109.47123 * 175.09721 * 13 12 11 17 17 O 1.42898 * 109.47578 * 175.00336 * 16 13 12 18 18 C 1.53005 * 117.50051 * 149.06972 * 9 7 2 19 19 C 1.53001 * 117.50049 * 80.40903 * 9 7 2 20 20 H 0.97002 * 120.00283 * 0.02562 * 1 2 3 21 21 H 1.08998 * 109.47073 * 65.48888 * 10 9 7 22 22 H 1.08998 * 109.47507 * 185.48902 * 10 9 7 23 23 H 1.08995 * 109.47084 * 304.06680 * 12 11 10 24 24 H 1.08998 * 109.47032 * 64.06813 * 12 11 10 25 25 H 1.00900 * 111.00463 * 294.72085 * 15 13 12 26 26 H 1.00900 * 110.99736 * 58.68126 * 15 13 12 27 27 H 1.09006 * 109.47486 * 295.00349 * 16 13 12 28 28 H 1.09002 * 109.47292 * 54.99740 * 16 13 12 29 29 H 0.96701 * 114.00544 * 180.02562 * 17 16 13 30 30 H 1.08995 * 117.49581 * 0.02562 * 18 9 7 31 31 H 1.08994 * 117.49924 * 145.02078 * 18 9 7 32 32 H 1.08997 * 117.50184 * 214.97953 * 19 9 7 33 33 H 1.08995 * 117.49498 * 359.97438 * 19 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.6133 1.9790 -1.3936 5 1 1.3931 2.6835 0.5801 6 1 3.4834 1.4767 0.8135 7 6 2.0045 -1.1940 -0.0005 8 1 1.4715 -2.1254 0.1214 9 6 3.5025 -1.1992 -0.1649 10 6 4.0197 -0.7033 -1.5168 11 8 3.3988 -1.4478 -2.5666 12 6 3.8865 -1.1301 -3.8717 13 6 3.0859 -1.9073 -4.9185 14 1 3.2654 -2.9752 -4.7941 15 7 1.6539 -1.6282 -4.7463 16 6 3.5246 -1.4763 -6.3194 17 8 2.8622 -2.2829 -7.2954 18 6 4.2849 -2.3198 0.5228 19 6 4.3500 -0.8922 1.0714 20 1 -0.4851 0.8400 -0.0004 21 1 3.7814 0.3542 -1.6312 22 1 5.1001 -0.8395 -1.5647 23 1 3.7761 -0.0605 -4.0503 24 1 4.9392 -1.4036 -3.9427 25 1 1.3203 -1.9817 -3.8621 26 1 1.4647 -0.6411 -4.8358 27 1 3.2640 -0.4294 -6.4758 28 1 4.6032 -1.6005 -6.4167 29 1 3.0936 -2.0649 -8.2086 30 1 3.7161 -3.0536 1.0938 31 1 5.1682 -2.7035 0.0124 32 1 5.2761 -0.3373 0.9216 33 1 3.8240 -0.6861 2.0035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308203647.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:33:01 Heat of formation + Delta-G solvation = -98.380952 kcal Electronic energy + Delta-G solvation = -14932.767863 eV Core-core repulsion = 12379.325584 eV Total energy + Delta-G solvation = -2553.442279 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.73798 -38.50159 -37.31467 -35.03789 -34.23468 -29.72919 -28.58310 -27.15681 -25.69437 -23.20080 -21.87956 -20.89100 -18.54277 -18.37088 -17.57671 -17.22618 -16.91523 -16.10390 -15.95239 -15.52731 -14.88407 -14.79905 -14.33856 -14.04104 -13.83751 -13.31430 -12.99338 -12.66154 -12.50378 -12.18494 -12.07695 -11.82360 -11.37401 -10.97872 -10.91340 -10.76720 -10.47094 -10.19367 -9.60481 -8.25454 -6.28418 1.28921 1.37344 1.48226 2.37186 2.49694 3.03412 3.32814 3.61132 3.67170 4.05669 4.13869 4.16966 4.25476 4.36922 4.39540 4.42646 4.44885 4.54012 4.66385 4.74468 4.88108 5.01545 5.04877 5.27586 5.48663 5.71487 6.19331 6.31507 6.44241 6.49993 6.75931 7.00524 7.36493 8.90802 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.030975 B = 0.009038 C = 0.008057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 903.746738 B = 3097.392926 C = 3474.228724 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.022 3.978 3 Si 0.932 3.068 4 H -0.269 1.269 5 H -0.299 1.299 6 H -0.226 1.226 7 C -0.472 4.472 8 H 0.022 0.978 9 C -0.038 4.038 10 C 0.104 3.896 11 O -0.386 6.386 12 C 0.021 3.979 13 C 0.092 3.908 14 H 0.076 0.924 15 N -0.837 5.837 16 C 0.094 3.906 17 O -0.581 6.581 18 C -0.166 4.166 19 C -0.175 4.175 20 H 0.263 0.737 21 H 0.029 0.971 22 H 0.062 0.938 23 H 0.047 0.953 24 H 0.072 0.928 25 H 0.343 0.657 26 H 0.335 0.665 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.395 0.605 30 H 0.073 0.927 31 H 0.104 0.896 32 H 0.103 0.897 33 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.963 1.669 -10.010 16.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.175 4.175 3 Si 0.757 3.243 4 H -0.195 1.195 5 H -0.226 1.226 6 H -0.148 1.148 7 C -0.510 4.510 8 H 0.041 0.959 9 C -0.039 4.039 10 C 0.028 3.972 11 O -0.306 6.306 12 C -0.057 4.057 13 C -0.020 4.020 14 H 0.094 0.906 15 N -0.364 5.364 16 C 0.016 3.984 17 O -0.389 6.389 18 C -0.203 4.203 19 C -0.212 4.212 20 H 0.072 0.928 21 H 0.047 0.953 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.090 0.910 25 H 0.155 0.845 26 H 0.147 0.853 27 H 0.072 0.928 28 H 0.094 0.906 29 H 0.244 0.756 30 H 0.092 0.908 31 H 0.122 0.878 32 H 0.121 0.879 33 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 12.308 0.893 -10.086 15.938 hybrid contribution 0.263 1.636 0.557 1.748 sum 12.572 2.530 -9.529 15.977 Atomic orbital electron populations 1.70072 1.08334 1.27810 1.52638 1.25734 0.95134 1.02685 0.93938 0.86037 0.80429 0.78580 0.79257 1.19520 1.22570 1.14803 1.20313 0.89787 0.92528 1.48334 0.95923 1.19311 0.92439 1.02519 0.89608 1.22150 0.94904 0.93383 0.86809 1.87972 1.64505 1.63813 1.14265 1.23327 0.99034 0.98969 0.84410 1.21463 0.87761 1.00036 0.92782 0.90626 1.58957 1.15308 1.21283 1.40902 1.21991 0.96101 0.93834 0.86479 1.86538 1.71218 1.61689 1.19458 1.22845 1.01813 0.91391 1.04258 1.23092 1.01327 0.98750 0.98081 0.92794 0.95284 0.91996 0.93437 0.91028 0.84510 0.85323 0.92784 0.90596 0.75590 0.90845 0.87823 0.87869 0.90294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 2 C 0.02 1.29 5.46 84.66 0.46 1.75 16 3 Si 0.93 43.46 25.17 68.60 1.73 45.19 16 4 H -0.27 -11.96 6.65 99.48 0.66 -11.30 16 5 H -0.30 -14.08 7.11 99.48 0.71 -13.38 16 6 H -0.23 -9.35 5.94 99.48 0.59 -8.76 16 7 C -0.47 -27.24 9.11 25.60 0.23 -27.01 16 8 H 0.02 1.49 8.06 -2.91 -0.02 1.47 16 9 C -0.04 -1.72 1.13 -52.93 -0.06 -1.78 16 10 C 0.10 4.15 5.46 71.98 0.39 4.54 16 11 O -0.39 -15.88 9.42 -148.98 -1.40 -17.29 16 12 C 0.02 0.65 5.58 71.98 0.40 1.05 16 13 C 0.09 2.76 3.39 44.91 0.15 2.91 16 14 H 0.08 2.47 8.14 -2.39 -0.02 2.45 16 15 N -0.84 -29.57 9.12 -168.68 -1.54 -31.11 16 16 C 0.09 2.07 6.65 71.98 0.48 2.55 16 17 O -0.58 -13.83 13.61 -148.98 -2.03 -15.86 16 18 C -0.17 -6.46 9.93 30.62 0.30 -6.16 16 19 C -0.18 -6.77 8.10 30.62 0.25 -6.52 16 20 H 0.26 15.63 8.31 -92.71 -0.77 14.86 16 21 H 0.03 1.20 4.96 -2.39 -0.01 1.19 16 22 H 0.06 2.01 8.09 -2.39 -0.02 1.99 16 23 H 0.05 1.37 8.14 -2.39 -0.02 1.36 16 24 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 25 H 0.34 14.16 8.51 -89.69 -0.76 13.39 16 26 H 0.33 11.27 8.99 -89.69 -0.81 10.46 16 27 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 28 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 29 H 0.39 4.98 9.12 -74.06 -0.68 4.31 16 30 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 31 H 0.10 3.37 8.14 -2.39 -0.02 3.35 16 32 H 0.10 3.30 8.14 -2.39 -0.02 3.28 16 33 H 0.08 3.22 8.14 -2.39 -0.02 3.20 16 Total: -1.00 -70.80 275.08 -1.62 -72.41 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -1.29 Total: 34.85 kcal Atomic # 6 Polarization: -31.27 SS G_CDS: 2.61 Total: -28.66 kcal Atomic # 7 Polarization: -89.41 SS G_CDS: -1.24 Total: -90.65 kcal Atomic # 8 Polarization: -29.71 SS G_CDS: -3.43 Total: -33.14 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 1.73 Total: 45.19 kcal Total: -70.80 -1.62 -72.41 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308203647.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.969 kcal (2) G-P(sol) polarization free energy of solvation -70.795 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.617 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.412 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.381 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds