Wall clock time and date at job start Mon Mar 30 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 O 1.46307 * 110.99774 * 269.99889 * 12 2 1 14 14 C 1.42898 * 113.99709 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.48465 * 29.97699 * 14 13 12 16 16 C 1.53087 * 109.48231 * 150.00343 * 14 13 12 17 17 C 1.53179 * 109.16447 * 177.59175 * 16 14 13 18 18 C 1.53175 * 109.03524 * 303.01712 * 17 16 14 19 19 C 1.53095 * 109.16229 * 56.98214 * 18 17 16 20 20 O 1.42899 * 109.41334 * 302.38724 * 19 18 17 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.00898 * 110.99845 * 146.05104 * 12 2 1 26 26 H 1.09007 * 109.51849 * 297.49783 * 16 14 13 27 27 H 1.08996 * 109.52289 * 57.68445 * 16 14 13 28 28 H 1.08997 * 109.54230 * 62.88777 * 17 16 14 29 29 H 1.09005 * 109.54101 * 183.15051 * 17 16 14 30 30 H 1.08998 * 109.52017 * 176.88529 * 18 17 16 31 31 H 1.08999 * 109.52488 * 297.07379 * 18 17 16 32 32 H 1.09000 * 109.47806 * 62.37734 * 19 18 17 33 33 H 1.08998 * 109.47910 * 182.39443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 8 2.1945 0.2432 2.3105 14 6 2.6707 -0.3647 3.5128 15 1 3.2915 -1.2254 3.2639 16 6 3.4990 0.6503 4.3048 17 6 3.9552 0.0105 5.6196 18 6 2.7244 -0.4675 6.3961 19 6 1.9259 -1.4394 5.5233 20 8 1.5594 -0.7913 4.3037 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.9111 -0.5221 -4.4375 25 1 2.8770 -1.1883 1.0060 26 1 4.3713 0.9436 3.7205 27 1 2.8907 1.5289 4.5190 28 1 4.6041 -0.8388 5.4060 29 1 4.4982 0.7456 6.2137 30 1 3.0426 -0.9736 7.3075 31 1 2.1004 0.3886 6.6526 32 1 2.5370 -2.3142 5.3009 33 1 1.0263 -1.7501 6.0547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308268471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:12 Heat of formation + Delta-G solvation = -53.350529 kcal Electronic energy + Delta-G solvation = -14853.284724 eV Core-core repulsion = 12301.795110 eV Total energy + Delta-G solvation = -2551.489613 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.20218 -36.17823 -34.17576 -33.60796 -31.72176 -30.04105 -27.41538 -25.04391 -24.48676 -23.00262 -20.51412 -19.91142 -17.53114 -16.43852 -16.22920 -15.69180 -15.15567 -14.73640 -14.29157 -13.70557 -13.35302 -12.96294 -12.78226 -12.69068 -12.13316 -11.95899 -11.49158 -11.25920 -11.13085 -10.94402 -10.86223 -10.72792 -10.21009 -9.94167 -9.58102 -9.31728 -9.14005 -8.69314 -7.80954 -6.19025 -4.21977 3.22966 3.26030 3.35643 3.39185 4.12113 4.33331 4.71413 4.75722 4.81690 4.99536 5.15185 5.15750 5.33450 5.50931 5.63502 5.68374 5.79431 5.83840 5.94992 6.07746 6.20375 6.45265 6.55097 6.74786 6.86641 7.23281 7.36106 7.49890 7.71507 8.10290 8.40718 8.79804 9.40718 10.92986 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.060918 B = 0.006403 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.524622 B = 4371.705067 C = 4419.984121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.174 3.826 3 H 0.024 0.976 4 C -0.532 4.532 5 H 0.080 0.920 6 C 0.078 3.922 7 N -0.893 5.893 8 Si 0.892 3.108 9 H -0.275 1.275 10 H -0.265 1.265 11 H -0.295 1.295 12 N -0.483 5.483 13 O -0.249 6.249 14 C 0.259 3.741 15 H 0.054 0.946 16 C -0.146 4.146 17 C -0.118 4.118 18 C -0.159 4.159 19 C 0.069 3.931 20 O -0.391 6.391 21 H 0.036 0.964 22 H 0.039 0.961 23 H 0.057 0.943 24 H 0.267 0.733 25 H 0.333 0.667 26 H 0.078 0.922 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.070 0.930 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.413 1.226 17.034 17.248 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.065 3.935 3 H 0.042 0.958 4 C -0.570 4.570 5 H 0.098 0.902 6 C -0.125 4.125 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.202 1.202 10 H -0.190 1.190 11 H -0.223 1.223 12 N -0.158 5.158 13 O -0.252 6.252 14 C 0.162 3.838 15 H 0.072 0.928 16 C -0.185 4.185 17 C -0.156 4.156 18 C -0.197 4.197 19 C -0.008 4.008 20 O -0.312 6.312 21 H 0.055 0.945 22 H 0.058 0.942 23 H 0.077 0.923 24 H 0.077 0.923 25 H 0.149 0.851 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.083 0.917 29 H 0.089 0.911 30 H 0.091 0.909 31 H 0.091 0.909 32 H 0.066 0.934 33 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 1.556 1.297 16.969 17.089 hybrid contribution 0.573 0.947 -0.466 1.201 sum 2.130 2.244 16.503 16.791 Atomic orbital electron populations 1.21977 0.97449 1.01250 0.98369 1.19814 0.92715 0.95057 0.85913 0.95793 1.20970 1.33422 1.14273 0.88336 0.90167 1.24847 0.95461 0.96791 0.95411 1.69870 1.44914 1.40183 0.98023 0.86767 0.80706 0.83324 0.77039 1.20162 1.19042 1.22304 1.67053 1.31214 1.15463 1.02052 1.90843 1.88615 1.29341 1.16426 1.22589 0.85200 0.93392 0.82664 0.92842 1.22141 1.00306 0.99711 0.96322 1.21577 0.97509 1.00755 0.95752 1.22253 0.97691 1.00789 0.98976 1.22449 0.99610 0.93828 0.84898 1.87934 1.33659 1.77150 1.32486 0.94509 0.94209 0.92347 0.92269 0.85116 0.90359 0.90336 0.91662 0.91106 0.90919 0.90948 0.93397 0.88982 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.18 8.99 37.16 0.33 -2.84 16 2 C 0.17 4.40 2.54 -68.86 -0.17 4.22 16 3 H 0.02 0.64 7.10 -51.93 -0.37 0.27 16 4 C -0.53 -14.99 9.17 -34.44 -0.32 -15.30 16 5 H 0.08 2.39 7.79 -52.49 -0.41 1.98 16 6 C 0.08 2.26 5.45 -17.82 -0.10 2.16 16 7 N -0.89 -26.95 13.96 55.43 0.77 -26.18 16 8 Si 0.89 22.21 24.37 -169.99 -4.14 18.07 16 9 H -0.27 -6.67 6.88 56.52 0.39 -6.28 16 10 H -0.27 -6.48 6.52 56.52 0.37 -6.12 16 11 H -0.30 -7.27 7.11 56.52 0.40 -6.87 16 12 N -0.48 -10.96 7.12 -5.65 -0.04 -11.00 16 13 O -0.25 -5.29 11.12 -37.74 -0.42 -5.71 16 14 C 0.26 4.34 3.54 37.20 0.13 4.48 16 15 H 0.05 0.85 7.92 -51.93 -0.41 0.44 16 16 C -0.15 -1.92 5.79 -26.59 -0.15 -2.08 16 17 C -0.12 -1.18 6.03 -26.55 -0.16 -1.34 16 18 C -0.16 -1.55 6.14 -26.59 -0.16 -1.71 16 19 C 0.07 0.82 6.84 37.21 0.25 1.08 16 20 O -0.39 -6.70 10.66 -59.04 -0.63 -7.33 16 21 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 22 H 0.04 0.95 3.28 -51.93 -0.17 0.78 16 23 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 24 H 0.27 7.55 8.31 -40.82 -0.34 7.21 16 25 H 0.33 7.12 8.16 -39.29 -0.32 6.80 16 26 H 0.08 0.98 8.14 -51.93 -0.42 0.56 16 27 H 0.08 1.08 8.14 -51.93 -0.42 0.66 16 28 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 29 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 32 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 266.19 15.07 4.01 4.01 Total: -1.00 -31.41 266.19 -5.88 -37.29 By element: Atomic # 1 Polarization: 7.28 SS G_CDS: -5.09 Total: 2.19 kcal Atomic # 6 Polarization: -11.00 SS G_CDS: -0.34 Total: -11.34 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.73 Total: -37.18 kcal Atomic # 8 Polarization: -11.99 SS G_CDS: -1.05 Total: -13.04 kcal Atomic # 14 Polarization: 22.21 SS G_CDS: -4.14 Total: 18.07 kcal Total LS contribution 4.01 Total: 4.01 kcal Total: -31.41 -5.88 -37.29 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308268471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.062 kcal (2) G-P(sol) polarization free energy of solvation -31.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.879 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.351 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds