Wall clock time and date at job start Mon Mar 30 2020 03:25:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 O 1.46307 * 110.99774 * 269.99889 * 12 2 1 14 14 C 1.42898 * 113.99709 * 180.02562 * 13 12 2 15 15 H 1.09005 * 109.48465 * 29.97699 * 14 13 12 16 16 C 1.53087 * 109.48231 * 150.00343 * 14 13 12 17 17 C 1.53179 * 109.16447 * 177.59175 * 16 14 13 18 18 C 1.53175 * 109.03524 * 303.01712 * 17 16 14 19 19 C 1.53095 * 109.16229 * 56.98214 * 18 17 16 20 20 O 1.42899 * 109.41334 * 302.38724 * 19 18 17 21 21 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 22 22 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 23 23 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.00898 * 110.99845 * 146.05104 * 12 2 1 26 26 H 1.09007 * 109.51849 * 297.49783 * 16 14 13 27 27 H 1.08996 * 109.52289 * 57.68445 * 16 14 13 28 28 H 1.08997 * 109.54230 * 62.88777 * 17 16 14 29 29 H 1.09005 * 109.54101 * 183.15051 * 17 16 14 30 30 H 1.08998 * 109.52017 * 176.88529 * 18 17 16 31 31 H 1.08999 * 109.52488 * 297.07379 * 18 17 16 32 32 H 1.09000 * 109.47806 * 62.37734 * 19 18 17 33 33 H 1.08998 * 109.47910 * 182.39443 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 8 2.1945 0.2432 2.3105 14 6 2.6707 -0.3647 3.5128 15 1 3.2915 -1.2254 3.2639 16 6 3.4990 0.6503 4.3048 17 6 3.9552 0.0105 5.6196 18 6 2.7244 -0.4675 6.3961 19 6 1.9259 -1.4394 5.5233 20 8 1.5594 -0.7913 4.3037 21 1 -0.3633 0.5137 0.8899 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3632 -1.0277 -0.0005 24 1 1.9111 -0.5221 -4.4375 25 1 2.8770 -1.1883 1.0060 26 1 4.3713 0.9436 3.7205 27 1 2.8907 1.5289 4.5190 28 1 4.6041 -0.8388 5.4060 29 1 4.4982 0.7456 6.2137 30 1 3.0426 -0.9736 7.3075 31 1 2.1004 0.3886 6.6526 32 1 2.5370 -2.3142 5.3009 33 1 1.0263 -1.7501 6.0547 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308268471.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:12 Heat of formation + Delta-G solvation = -75.689257 kcal Electronic energy + Delta-G solvation = -14854.253403 eV Core-core repulsion = 12301.795110 eV Total energy + Delta-G solvation = -2552.458293 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.33545 -37.88055 -36.00511 -34.60645 -33.77434 -31.24670 -29.14961 -27.14203 -25.53922 -24.10868 -22.21759 -21.15787 -19.39179 -18.08502 -17.59274 -17.11217 -16.90081 -15.72748 -15.60216 -15.35288 -15.02667 -14.44558 -14.23698 -13.97670 -13.75768 -13.46691 -13.17838 -12.84007 -12.73378 -12.24011 -12.18315 -11.90277 -11.86405 -11.51689 -11.27816 -11.17624 -10.85333 -10.42933 -9.60324 -8.40281 -6.48430 1.29419 1.34279 1.45020 1.70122 2.25659 2.92403 2.97633 3.73101 3.81572 3.87688 4.02848 4.05703 4.25378 4.44584 4.49364 4.62715 4.66089 4.78544 4.83798 4.87552 4.93362 5.03006 5.07445 5.15085 5.28408 5.34419 5.45285 5.73130 6.11923 6.25559 6.52080 6.60268 7.18217 8.74992 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.060918 B = 0.006403 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 459.524622 B = 4371.705067 C = 4419.984121 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C 0.179 3.821 3 H 0.013 0.987 4 C -0.538 4.538 5 H 0.050 0.950 6 C 0.028 3.972 7 N -0.934 5.934 8 Si 0.949 3.051 9 H -0.260 1.260 10 H -0.257 1.257 11 H -0.290 1.290 12 N -0.488 5.488 13 O -0.263 6.263 14 C 0.249 3.751 15 H 0.059 0.941 16 C -0.141 4.141 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.058 3.942 20 O -0.425 6.425 21 H 0.050 0.950 22 H 0.041 0.959 23 H 0.056 0.944 24 H 0.272 0.728 25 H 0.335 0.665 26 H 0.082 0.918 27 H 0.070 0.930 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.103 0.897 31 H 0.067 0.933 32 H 0.057 0.943 33 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.203 2.055 18.948 19.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.069 3.931 3 H 0.031 0.969 4 C -0.576 4.576 5 H 0.068 0.932 6 C -0.172 4.172 7 N -0.573 5.573 8 Si 0.775 3.225 9 H -0.186 1.186 10 H -0.181 1.181 11 H -0.217 1.217 12 N -0.161 5.161 13 O -0.270 6.270 14 C 0.153 3.847 15 H 0.077 0.923 16 C -0.180 4.180 17 C -0.151 4.151 18 C -0.191 4.191 19 C -0.018 4.018 20 O -0.347 6.347 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.075 0.925 24 H 0.081 0.919 25 H 0.151 0.849 26 H 0.100 0.900 27 H 0.088 0.912 28 H 0.094 0.906 29 H 0.112 0.888 30 H 0.121 0.879 31 H 0.086 0.914 32 H 0.075 0.925 33 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 1.349 2.104 18.905 19.070 hybrid contribution 0.706 0.593 -0.936 1.314 sum 2.055 2.697 17.969 18.286 Atomic orbital electron populations 1.21902 0.96222 1.01396 0.99072 1.19626 0.93655 0.93986 0.85832 0.96929 1.21158 1.32931 1.13505 0.90020 0.93168 1.25650 0.96762 0.99780 0.94983 1.69983 1.46511 1.42073 0.98728 0.85838 0.79525 0.79738 0.77382 1.18592 1.18145 1.21680 1.66914 1.31638 1.15700 1.01833 1.90798 1.89241 1.29550 1.17371 1.22980 0.85388 0.94721 0.81639 0.92330 1.22163 0.99570 0.98641 0.97601 1.21617 0.97910 1.01548 0.94061 1.22229 0.97082 1.00294 0.99517 1.22799 1.01022 0.94466 0.83531 1.87865 1.34411 1.77948 1.34457 0.93122 0.94071 0.92515 0.91871 0.84852 0.89952 0.91163 0.90628 0.88826 0.87895 0.91385 0.92490 0.87626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.98 8.99 71.99 0.65 -5.34 16 2 C 0.18 9.01 2.54 44.17 0.11 9.12 16 3 H 0.01 0.68 7.10 -2.39 -0.02 0.66 16 4 C -0.54 -30.82 9.17 25.60 0.23 -30.59 16 5 H 0.05 3.10 7.79 -2.91 -0.02 3.08 16 6 C 0.03 1.63 5.45 84.65 0.46 2.09 16 7 N -0.93 -57.18 13.96 21.45 0.30 -56.88 16 8 Si 0.95 45.14 24.37 68.60 1.67 46.81 16 9 H -0.26 -11.73 6.88 99.48 0.68 -11.05 16 10 H -0.26 -11.82 6.52 99.48 0.65 -11.17 16 11 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 12 N -0.49 -22.23 7.12 -171.79 -1.22 -23.45 16 13 O -0.26 -11.12 11.12 -27.41 -0.30 -11.43 16 14 C 0.25 8.16 3.54 72.01 0.25 8.42 16 15 H 0.06 1.82 7.92 -2.38 -0.02 1.80 16 16 C -0.14 -3.48 5.79 30.68 0.18 -3.30 16 17 C -0.11 -1.92 6.03 30.71 0.19 -1.74 16 18 C -0.15 -2.51 6.14 30.68 0.19 -2.32 16 19 C 0.06 1.25 6.84 72.01 0.49 1.74 16 20 O -0.42 -14.13 10.66 -126.21 -1.35 -15.47 16 21 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 22 H 0.04 1.89 3.28 -2.39 -0.01 1.88 16 23 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 24 H 0.27 15.49 8.31 -92.71 -0.77 14.72 16 25 H 0.34 14.63 8.16 -89.70 -0.73 13.90 16 26 H 0.08 1.94 8.14 -2.38 -0.02 1.92 16 27 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 28 H 0.08 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.09 1.21 8.14 -2.38 -0.02 1.20 16 30 H 0.10 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 33 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 Total: -1.00 -67.25 266.19 2.13 -65.12 By element: Atomic # 1 Polarization: 16.94 SS G_CDS: 0.28 Total: 17.22 kcal Atomic # 6 Polarization: -24.67 SS G_CDS: 2.75 Total: -21.92 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -0.92 Total: -80.33 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: -1.65 Total: -26.90 kcal Atomic # 14 Polarization: 45.14 SS G_CDS: 1.67 Total: 46.81 kcal Total: -67.25 2.13 -65.12 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308268471.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.568 kcal (2) G-P(sol) polarization free energy of solvation -67.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.818 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.128 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.121 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds