Wall clock time and date at job start Mon Mar 30 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46680 * 2 1 4 4 C 1.50702 * 109.47451 * 119.99641 * 2 1 3 5 5 H 1.07995 * 119.99745 * 120.00358 * 4 2 1 6 6 C 1.37876 * 120.00247 * 300.00699 * 4 2 1 7 7 N 1.31519 * 119.99570 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47007 * 59.99760 * 8 6 4 10 10 H 1.48501 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47099 * 300.00091 * 8 6 4 12 12 N 1.46893 * 109.47326 * 240.00268 * 2 1 3 13 13 O 1.46301 * 111.00084 * 299.99408 * 12 2 1 14 14 C 1.42895 * 114.00498 * 179.97438 * 13 12 2 15 15 H 1.09001 * 109.48956 * 329.97515 * 14 13 12 16 16 C 1.53087 * 109.48387 * 209.94390 * 14 13 12 17 17 C 1.53186 * 109.16665 * 182.40689 * 16 14 13 18 18 C 1.53181 * 109.02951 * 56.98173 * 17 16 14 19 19 C 1.53090 * 109.16481 * 303.01710 * 18 17 16 20 20 O 1.42905 * 109.48019 * 89.99947 * 14 13 12 21 21 H 1.09009 * 109.46680 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47102 * 299.99783 * 1 2 3 23 23 H 1.08998 * 109.47006 * 60.00384 * 1 2 3 24 24 H 0.97007 * 119.99535 * 180.02562 * 7 6 4 25 25 H 1.00908 * 111.00446 * 176.04217 * 12 2 1 26 26 H 1.09001 * 109.52122 * 62.50454 * 16 14 13 27 27 H 1.08995 * 109.57446 * 302.34568 * 16 14 13 28 28 H 1.08997 * 109.53990 * 297.12206 * 17 16 14 29 29 H 1.08995 * 109.54450 * 176.84938 * 17 16 14 30 30 H 1.09007 * 109.52008 * 183.11801 * 18 17 16 31 31 H 1.08996 * 109.52389 * 62.92673 * 18 17 16 32 32 H 1.08998 * 109.48371 * 297.63244 * 19 18 17 33 33 H 1.09004 * 109.48242 * 177.59100 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5883 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1206 4.0081 10 1 1.8270 -0.4198 5.2205 11 1 1.8261 -2.5201 4.0077 12 7 2.0197 -0.6924 -1.1994 13 8 1.5508 -2.0778 -1.2332 14 6 1.9907 -2.8127 -2.3770 15 1 2.1169 -2.1328 -3.2196 16 6 0.9493 -3.8772 -2.7315 17 6 1.4554 -4.6996 -3.9207 18 6 2.8135 -5.3113 -3.5631 19 6 3.7830 -4.1913 -3.1765 20 8 3.2378 -3.4466 -2.0854 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1618 3.4844 25 1 3.0263 -0.6499 -1.2559 26 1 0.0095 -3.3932 -2.9972 27 1 0.7919 -4.5334 -1.8756 28 1 1.5647 -4.0528 -4.7911 29 1 0.7443 -5.4952 -4.1429 30 1 3.2070 -5.8528 -4.4234 31 1 2.6948 -5.9962 -2.7235 32 1 3.9326 -3.5294 -4.0295 33 1 4.7385 -4.6239 -2.8798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308268473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:14 Heat of formation + Delta-G solvation = -61.129642 kcal Electronic energy + Delta-G solvation = -15048.235868 eV Core-core repulsion = 12496.408927 eV Total energy + Delta-G solvation = -2551.826941 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.07876 -35.91328 -33.86532 -33.50683 -31.32903 -29.65105 -26.77974 -25.00116 -24.38093 -22.88605 -20.29975 -19.83920 -16.91718 -16.32244 -16.18985 -15.56567 -14.92510 -14.51060 -14.16996 -13.70530 -13.08421 -12.86040 -12.53921 -12.33145 -11.57999 -11.32766 -11.17528 -11.01583 -10.87823 -10.84752 -10.69447 -10.27825 -10.21746 -10.01579 -9.81124 -9.25408 -9.05937 -8.37124 -7.61316 -5.97655 -4.07206 3.34613 3.37872 3.43014 3.53197 4.20477 4.45992 4.82048 4.87996 4.95500 5.18566 5.30910 5.32170 5.46382 5.65826 5.73930 5.79799 5.95043 5.97790 6.09881 6.35084 6.39285 6.94368 7.10153 7.19499 7.43077 7.53143 7.76057 7.86546 8.10405 8.31882 8.44264 8.98298 9.58890 11.05021 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040149 B = 0.007692 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.229321 B = 3639.049730 C = 3986.601867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C 0.195 3.805 3 H 0.061 0.939 4 C -0.536 4.536 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.891 5.891 8 Si 0.894 3.106 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.497 5.497 13 O -0.219 6.219 14 C 0.249 3.751 15 H 0.057 0.943 16 C -0.140 4.140 17 C -0.118 4.118 18 C -0.159 4.159 19 C 0.072 3.928 20 O -0.405 6.405 21 H 0.033 0.967 22 H 0.083 0.917 23 H 0.013 0.987 24 H 0.262 0.738 25 H 0.321 0.679 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.046 0.954 33 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.361 -8.640 -11.995 14.970 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.088 3.912 3 H 0.079 0.921 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.137 4.137 7 N -0.530 5.530 8 Si 0.722 3.278 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.168 5.168 13 O -0.223 6.223 14 C 0.151 3.849 15 H 0.074 0.926 16 C -0.179 4.179 17 C -0.155 4.155 18 C -0.197 4.197 19 C -0.005 4.005 20 O -0.327 6.327 21 H 0.052 0.948 22 H 0.102 0.898 23 H 0.032 0.968 24 H 0.072 0.928 25 H 0.133 0.867 26 H 0.098 0.902 27 H 0.095 0.905 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.065 0.935 33 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.677 -8.351 -11.907 14.641 hybrid contribution 0.960 -0.854 1.291 1.821 sum 2.637 -9.205 -10.617 14.297 Atomic orbital electron populations 1.21633 0.96890 0.99790 0.99902 1.19591 0.93916 0.92954 0.84775 0.92140 1.21662 1.31747 1.12746 0.91330 0.92284 1.24922 0.94866 0.94897 0.99037 1.69871 1.36628 1.22866 1.23640 0.86617 0.79148 0.79904 0.82105 1.20327 1.21256 1.20265 1.67482 1.14793 0.91653 1.42828 1.91024 1.66891 1.21009 1.43415 1.22738 0.82793 0.89540 0.89830 0.92602 1.22022 0.99020 0.98056 0.98785 1.21579 0.96803 0.99415 0.97743 1.22240 0.96418 0.99060 1.01949 1.22403 0.96271 0.92200 0.89636 1.87899 1.38624 1.67743 1.38392 0.94830 0.89824 0.96836 0.92824 0.86658 0.90198 0.90485 0.91781 0.91231 0.91064 0.90963 0.93525 0.89214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.20 9.02 37.16 0.34 -2.87 16 2 C 0.20 5.15 3.15 -68.87 -0.22 4.93 16 3 H 0.06 1.66 8.14 -51.92 -0.42 1.24 16 4 C -0.54 -15.45 8.35 -34.44 -0.29 -15.74 16 5 H 0.06 1.76 7.75 -52.49 -0.41 1.36 16 6 C 0.06 1.85 5.30 -17.82 -0.09 1.76 16 7 N -0.89 -25.88 11.32 55.43 0.63 -25.26 16 8 Si 0.89 22.22 29.54 -169.99 -5.02 17.20 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 11 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 12 N -0.50 -11.50 7.05 -5.65 -0.04 -11.54 16 13 O -0.22 -5.08 9.87 -37.73 -0.37 -5.45 16 14 C 0.25 4.50 3.51 37.20 0.13 4.63 16 15 H 0.06 0.96 8.05 -51.93 -0.42 0.54 16 16 C -0.14 -2.08 5.79 -26.59 -0.15 -2.23 16 17 C -0.12 -1.31 6.03 -26.54 -0.16 -1.47 16 18 C -0.16 -1.72 6.14 -26.59 -0.16 -1.89 16 19 C 0.07 0.92 6.84 37.20 0.25 1.17 16 20 O -0.40 -7.36 10.66 -59.04 -0.63 -7.99 16 21 H 0.03 0.87 7.64 -51.92 -0.40 0.48 16 22 H 0.08 2.31 6.07 -51.93 -0.32 1.99 16 23 H 0.01 0.30 8.14 -51.93 -0.42 -0.12 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.32 7.06 8.99 -39.29 -0.35 6.70 16 26 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 27 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 30 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 31 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 32 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 LS Contribution 272.12 15.07 4.10 4.10 Total: -1.00 -30.86 272.12 -6.94 -37.80 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: -5.25 Total: 2.84 kcal Atomic # 6 Polarization: -11.35 SS G_CDS: -0.36 Total: -11.70 kcal Atomic # 7 Polarization: -37.39 SS G_CDS: 0.59 Total: -36.80 kcal Atomic # 8 Polarization: -12.44 SS G_CDS: -1.00 Total: -13.44 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -30.86 -6.94 -37.80 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308268473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.332 kcal (2) G-P(sol) polarization free energy of solvation -30.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.187 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.943 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.798 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds