Wall clock time and date at job start Mon Mar 30 2020 03:25:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09009 * 109.46680 * 2 1 4 4 C 1.50702 * 109.47451 * 119.99641 * 2 1 3 5 5 H 1.07995 * 119.99745 * 120.00358 * 4 2 1 6 6 C 1.37876 * 120.00247 * 300.00699 * 4 2 1 7 7 N 1.31519 * 119.99570 * 359.97438 * 6 4 2 8 8 Si 1.86794 * 120.00225 * 179.97438 * 6 4 2 9 9 H 1.48505 * 109.47007 * 59.99760 * 8 6 4 10 10 H 1.48501 * 109.47202 * 179.97438 * 8 6 4 11 11 H 1.48497 * 109.47099 * 300.00091 * 8 6 4 12 12 N 1.46893 * 109.47326 * 240.00268 * 2 1 3 13 13 O 1.46301 * 111.00084 * 299.99408 * 12 2 1 14 14 C 1.42895 * 114.00498 * 179.97438 * 13 12 2 15 15 H 1.09001 * 109.48956 * 329.97515 * 14 13 12 16 16 C 1.53087 * 109.48387 * 209.94390 * 14 13 12 17 17 C 1.53186 * 109.16665 * 182.40689 * 16 14 13 18 18 C 1.53181 * 109.02951 * 56.98173 * 17 16 14 19 19 C 1.53090 * 109.16481 * 303.01710 * 18 17 16 20 20 O 1.42905 * 109.48019 * 89.99947 * 14 13 12 21 21 H 1.09009 * 109.46680 * 180.02562 * 1 2 3 22 22 H 1.09000 * 109.47102 * 299.99783 * 1 2 3 23 23 H 1.08998 * 109.47006 * 60.00384 * 1 2 3 24 24 H 0.97007 * 119.99535 * 180.02562 * 7 6 4 25 25 H 1.00908 * 111.00446 * 176.04217 * 12 2 1 26 26 H 1.09001 * 109.52122 * 62.50454 * 16 14 13 27 27 H 1.08995 * 109.57446 * 302.34568 * 16 14 13 28 28 H 1.08997 * 109.53990 * 297.12206 * 17 16 14 29 29 H 1.08995 * 109.54450 * 176.84938 * 17 16 14 30 30 H 1.09007 * 109.52008 * 183.11801 * 18 17 16 31 31 H 1.08996 * 109.52389 * 62.92673 * 18 17 16 32 32 H 1.08998 * 109.48371 * 297.63244 * 19 18 17 33 33 H 1.09004 * 109.48242 * 177.59100 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0324 -0.7103 1.2305 5 1 2.6534 -1.5883 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3215 -1.1202 4.0079 9 1 3.8065 -1.1206 4.0081 10 1 1.8270 -0.4198 5.2205 11 1 1.8261 -2.5201 4.0077 12 7 2.0197 -0.6924 -1.1994 13 8 1.5508 -2.0778 -1.2332 14 6 1.9907 -2.8127 -2.3770 15 1 2.1169 -2.1328 -3.2196 16 6 0.9493 -3.8772 -2.7315 17 6 1.4554 -4.6996 -3.9207 18 6 2.8135 -5.3113 -3.5631 19 6 3.7830 -4.1913 -3.1765 20 8 3.2378 -3.4466 -2.0854 21 1 -0.3633 -1.0278 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 0.7094 1.1618 3.4844 25 1 3.0263 -0.6499 -1.2559 26 1 0.0095 -3.3932 -2.9972 27 1 0.7919 -4.5334 -1.8756 28 1 1.5647 -4.0528 -4.7911 29 1 0.7443 -5.4952 -4.1429 30 1 3.2070 -5.8528 -4.4234 31 1 2.6948 -5.9962 -2.7235 32 1 3.9326 -3.5294 -4.0295 33 1 4.7385 -4.6239 -2.8798 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308268473.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:25:14 Heat of formation + Delta-G solvation = -81.539293 kcal Electronic energy + Delta-G solvation = -15049.120897 eV Core-core repulsion = 12496.408927 eV Total energy + Delta-G solvation = -2552.711970 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.30330 -37.70797 -35.77717 -34.60701 -33.29947 -30.97123 -28.67619 -27.20082 -25.49272 -24.08635 -22.10255 -21.15112 -18.71748 -18.23381 -17.53213 -16.99576 -16.76874 -15.82225 -15.31528 -15.28504 -14.80087 -14.46399 -13.78780 -13.62413 -13.41282 -13.27799 -12.91317 -12.67709 -12.34745 -12.32784 -12.12932 -12.00464 -11.90968 -11.84130 -11.37844 -11.06962 -10.58091 -10.37439 -9.52763 -8.14592 -6.32811 1.35935 1.37753 1.46133 1.93893 2.38142 2.92476 3.09418 3.83765 3.90090 3.95666 4.05344 4.13567 4.41998 4.48967 4.67405 4.82564 4.83931 4.89075 5.03113 5.06004 5.08456 5.09465 5.21542 5.35571 5.43307 5.61344 5.77524 5.94147 6.20646 6.27721 6.65065 6.77155 7.36141 8.85829 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.040149 B = 0.007692 C = 0.007022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 697.229321 B = 3639.049730 C = 3986.601867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C 0.196 3.804 3 H 0.047 0.953 4 C -0.556 4.556 5 H 0.041 0.959 6 C 0.022 3.978 7 N -0.910 5.910 8 Si 0.954 3.046 9 H -0.272 1.272 10 H -0.274 1.274 11 H -0.280 1.280 12 N -0.487 5.487 13 O -0.249 6.249 14 C 0.242 3.758 15 H 0.066 0.934 16 C -0.137 4.137 17 C -0.111 4.111 18 C -0.154 4.154 19 C 0.060 3.940 20 O -0.439 6.439 21 H 0.021 0.979 22 H 0.064 0.936 23 H 0.033 0.967 24 H 0.266 0.734 25 H 0.325 0.675 26 H 0.082 0.918 27 H 0.059 0.941 28 H 0.079 0.921 29 H 0.091 0.909 30 H 0.105 0.895 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.714 -9.827 -13.001 16.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.087 3.913 3 H 0.064 0.936 4 C -0.595 4.595 5 H 0.059 0.941 6 C -0.178 4.178 7 N -0.549 5.549 8 Si 0.780 3.220 9 H -0.197 1.197 10 H -0.199 1.199 11 H -0.206 1.206 12 N -0.156 5.156 13 O -0.255 6.255 14 C 0.146 3.854 15 H 0.084 0.916 16 C -0.176 4.176 17 C -0.149 4.149 18 C -0.192 4.192 19 C -0.016 4.016 20 O -0.362 6.362 21 H 0.040 0.960 22 H 0.083 0.917 23 H 0.052 0.948 24 H 0.075 0.925 25 H 0.138 0.862 26 H 0.101 0.899 27 H 0.077 0.923 28 H 0.098 0.902 29 H 0.110 0.890 30 H 0.123 0.877 31 H 0.080 0.920 32 H 0.081 0.919 33 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 2.044 -9.538 -12.935 16.200 hybrid contribution 0.891 -0.532 1.518 1.839 sum 2.935 -10.070 -11.416 15.503 Atomic orbital electron populations 1.21439 0.96581 0.98892 0.99889 1.19425 0.94129 0.92505 0.85203 0.93567 1.21803 1.32204 1.12554 0.92891 0.94099 1.25627 0.94978 0.95595 1.01643 1.69960 1.36892 1.23555 1.24481 0.85680 0.78805 0.78543 0.79004 1.19741 1.19904 1.20577 1.67310 1.14947 0.92719 1.40650 1.90972 1.67767 1.20584 1.46226 1.23061 0.84012 0.90162 0.88202 0.91621 1.22063 0.98418 0.97268 0.99849 1.21604 0.97346 0.99677 0.96250 1.22229 0.95820 0.98250 1.02896 1.22776 0.97147 0.92761 0.88890 1.87836 1.38642 1.68608 1.41127 0.95998 0.91730 0.94793 0.92469 0.86250 0.89919 0.92260 0.90203 0.89027 0.87678 0.91986 0.91918 0.87914 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.72 9.02 71.98 0.65 -5.07 16 2 C 0.20 10.49 3.15 44.17 0.14 10.63 16 3 H 0.05 2.59 8.14 -2.38 -0.02 2.58 16 4 C -0.56 -32.55 8.35 25.60 0.21 -32.33 16 5 H 0.04 2.49 7.75 -2.91 -0.02 2.47 16 6 C 0.02 1.25 5.30 84.65 0.45 1.70 16 7 N -0.91 -53.01 11.32 21.45 0.24 -52.77 16 8 Si 0.95 45.63 29.54 68.60 2.03 47.65 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.27 -12.47 7.11 99.48 0.71 -11.76 16 11 H -0.28 -13.46 7.11 99.48 0.71 -12.75 16 12 N -0.49 -22.78 7.05 -171.80 -1.21 -23.99 16 13 O -0.25 -11.69 9.87 -27.39 -0.27 -11.96 16 14 C 0.24 8.67 3.51 72.01 0.25 8.93 16 15 H 0.07 2.18 8.05 -2.39 -0.02 2.16 16 16 C -0.14 -3.92 5.79 30.69 0.18 -3.74 16 17 C -0.11 -2.15 6.03 30.72 0.19 -1.97 16 18 C -0.15 -2.90 6.14 30.68 0.19 -2.71 16 19 C 0.06 1.41 6.84 72.01 0.49 1.90 16 20 O -0.44 -15.77 10.66 -126.21 -1.35 -17.12 16 21 H 0.02 1.13 7.64 -2.38 -0.02 1.11 16 22 H 0.06 3.60 6.07 -2.39 -0.01 3.58 16 23 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 24 H 0.27 14.65 8.31 -92.70 -0.77 13.87 16 25 H 0.32 14.50 8.99 -89.69 -0.81 13.69 16 26 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 27 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 28 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.10 1.31 8.14 -2.38 -0.02 1.29 16 31 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 32 H 0.06 1.26 8.14 -2.39 -0.02 1.24 16 33 H 0.10 2.09 8.14 -2.38 -0.02 2.07 16 Total: -1.00 -66.08 272.12 2.46 -63.62 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: 0.28 Total: 17.22 kcal Atomic # 6 Polarization: -25.41 SS G_CDS: 2.75 Total: -22.66 kcal Atomic # 7 Polarization: -75.79 SS G_CDS: -0.97 Total: -76.76 kcal Atomic # 8 Polarization: -27.46 SS G_CDS: -1.62 Total: -29.08 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.65 kcal Total: -66.08 2.46 -63.62 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308268473.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.921 kcal (2) G-P(sol) polarization free energy of solvation -66.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.618 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds