Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42907 * 109.47144 * 2 1 4 4 C 1.42894 * 114.00439 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47398 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47076 * 65.00344 * 5 4 3 7 7 C 1.47960 * 110.99975 * 190.00073 * 6 5 4 8 8 C 1.53940 * 86.18020 * 222.41827 * 7 6 5 9 9 O 1.42900 * 113.73337 * 269.26005 * 8 7 6 10 10 C 1.50694 * 113.73364 * 138.08016 * 8 7 6 11 11 H 1.08000 * 120.00563 * 1.89939 * 10 8 7 12 12 C 1.37885 * 119.99902 * 181.90102 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.48189 * 111.06803 * 90.56485 * 6 5 4 19 19 H 1.08994 * 109.47392 * 60.00021 * 1 2 3 20 20 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47446 * 299.99977 * 1 2 3 22 22 H 1.08997 * 109.47446 * 240.00023 * 2 1 3 23 23 H 1.09003 * 109.47469 * 119.99737 * 2 1 3 24 24 H 1.09004 * 109.46515 * 60.00216 * 4 3 2 25 25 H 1.08997 * 109.47526 * 300.00540 * 4 3 2 26 26 H 1.09003 * 109.47110 * 305.00564 * 5 4 3 27 27 H 1.09005 * 109.47409 * 185.00693 * 5 4 3 28 28 H 1.09000 * 113.75922 * 108.10132 * 7 6 5 29 29 H 1.08996 * 113.85941 * 336.74802 * 7 6 5 30 30 H 0.96699 * 113.99865 * 178.10203 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.08996 * 113.76245 * 23.24297 * 18 6 5 33 33 H 1.08999 * 113.82580 * 251.80952 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8252 2.9385 -0.0001 6 7 3.3854 3.5632 1.2546 7 6 3.5326 5.0343 1.1946 8 6 4.0770 4.9353 2.6311 9 8 3.0697 5.0556 3.6375 10 6 5.2727 5.8156 2.8886 11 1 5.6473 6.4599 2.1070 12 6 5.8885 5.7986 4.1222 13 7 5.4320 5.0143 5.0742 14 14 7.3710 6.8893 4.4411 15 1 8.6118 6.1537 4.0883 16 1 7.2702 8.1167 3.6113 17 1 7.4095 7.2646 5.8774 18 6 4.4417 3.4789 2.2905 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8338 0.9766 -0.8892 25 1 3.8333 0.9768 0.8907 26 1 3.3497 3.4410 -0.8424 27 1 4.9081 3.0256 -0.0894 28 1 2.5851 5.5678 1.1198 29 1 4.2704 5.3742 0.4678 30 1 3.4032 4.9650 4.5406 31 1 5.8655 5.0021 5.9419 32 1 5.4464 3.3613 1.8847 33 1 4.2191 2.7721 3.0898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308318524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = -65.100684 kcal Electronic energy + Delta-G solvation = -14849.561211 eV Core-core repulsion = 12297.562073 eV Total energy + Delta-G solvation = -2551.999138 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.98636 -37.51909 -34.28558 -32.06314 -31.67070 -29.57190 -26.53924 -25.02357 -23.85656 -22.61736 -20.85860 -18.56315 -17.18820 -16.46288 -15.96480 -15.08970 -14.82233 -14.36822 -14.17631 -13.84350 -12.99118 -12.70896 -12.64402 -12.03082 -11.93521 -11.59355 -11.37052 -11.19559 -11.03527 -10.92199 -10.60533 -10.46030 -10.14448 -9.95299 -9.35636 -9.17574 -8.60920 -8.14358 -7.69569 -6.22869 -4.32919 3.20448 3.28183 3.31897 3.96710 4.27574 4.82644 5.01522 5.13578 5.25108 5.42625 5.47115 5.54567 5.68445 5.71023 5.94694 6.00073 6.04552 6.12662 6.20364 6.23018 6.40046 6.49880 6.77173 7.09242 7.28128 7.40738 7.53708 7.78992 8.03953 8.09919 8.69054 9.37036 9.67921 10.82868 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.057441 B = 0.006493 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.341412 B = 4311.213362 C = 4420.093163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.056 3.944 3 O -0.371 6.371 4 C 0.076 3.924 5 C 0.019 3.981 6 N -0.469 5.469 7 C 0.009 3.991 8 C 0.244 3.756 9 O -0.571 6.571 10 C -0.538 4.538 11 H 0.065 0.935 12 C 0.071 3.929 13 N -0.898 5.898 14 Si 0.902 3.098 15 H -0.279 1.279 16 H -0.272 1.272 17 H -0.284 1.284 18 C -0.016 4.016 19 H 0.060 0.940 20 H 0.065 0.935 21 H 0.065 0.935 22 H 0.039 0.961 23 H 0.044 0.956 24 H 0.041 0.959 25 H 0.047 0.953 26 H 0.070 0.930 27 H 0.053 0.947 28 H 0.074 0.926 29 H 0.063 0.937 30 H 0.387 0.613 31 H 0.270 0.730 32 H 0.058 0.942 33 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.612 -7.428 -7.775 11.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.021 4.021 3 O -0.290 6.290 4 C -0.001 4.001 5 C -0.111 4.111 6 N -0.191 5.191 7 C -0.120 4.120 8 C 0.203 3.797 9 O -0.381 6.381 10 C -0.576 4.576 11 H 0.083 0.917 12 C -0.131 4.131 13 N -0.538 5.538 14 Si 0.730 3.270 15 H -0.205 1.205 16 H -0.197 1.197 17 H -0.209 1.209 18 C -0.145 4.145 19 H 0.079 0.921 20 H 0.083 0.917 21 H 0.084 0.916 22 H 0.057 0.943 23 H 0.062 0.938 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.089 0.911 27 H 0.071 0.929 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.241 0.759 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -3.736 -7.542 -7.996 11.609 hybrid contribution 2.299 0.350 0.398 2.359 sum -1.438 -7.192 -7.598 10.560 Atomic orbital electron populations 1.21708 0.94096 1.01607 1.03236 1.22387 0.95498 0.84907 0.99324 1.88017 1.20982 1.24854 1.95166 1.22394 0.81496 0.97190 0.98985 1.22664 0.98092 0.94157 0.96146 1.68602 1.39544 1.06693 1.04302 1.24098 1.00013 0.89215 0.98671 1.19742 0.85680 0.89650 0.84643 1.86056 1.36954 1.95153 1.19976 1.21671 1.12582 1.24783 0.98570 0.91714 1.25062 0.97410 0.94886 0.95769 1.69440 1.41640 1.38311 1.04405 0.86431 0.82226 0.80774 0.77615 1.20512 1.19678 1.20925 1.24816 0.92054 1.02930 0.94685 0.92123 0.91652 0.91600 0.94267 0.93794 0.94131 0.93499 0.91133 0.92934 0.90722 0.91917 0.75938 0.91984 0.92418 0.91105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.72 10.28 37.15 0.38 -1.33 16 2 C 0.06 0.74 6.66 37.15 0.25 0.99 16 3 O -0.37 -6.44 10.29 -35.23 -0.36 -6.80 16 4 C 0.08 1.23 6.26 37.15 0.23 1.47 16 5 C 0.02 0.33 5.18 -3.83 -0.02 0.31 16 6 N -0.47 -10.37 6.11 -238.02 -1.45 -11.83 16 7 C 0.01 0.20 7.34 -2.76 -0.02 0.18 16 8 C 0.24 6.37 1.40 -90.83 -0.13 6.24 16 9 O -0.57 -15.93 13.48 -35.23 -0.48 -16.40 16 10 C -0.54 -14.57 8.61 -34.44 -0.30 -14.87 16 11 H 0.06 1.72 7.81 -52.49 -0.41 1.31 16 12 C 0.07 1.88 5.40 -17.82 -0.10 1.79 16 13 N -0.90 -24.38 11.20 55.43 0.62 -23.76 16 14 Si 0.90 20.52 29.54 -169.99 -5.02 15.50 16 15 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 17 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 18 C -0.02 -0.38 7.37 -2.63 -0.02 -0.39 16 19 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 21 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 22 H 0.04 0.45 8.14 -51.93 -0.42 0.02 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.14 16 24 H 0.04 0.54 8.14 -51.93 -0.42 0.12 16 25 H 0.05 0.78 8.14 -51.93 -0.42 0.35 16 26 H 0.07 1.21 8.08 -51.93 -0.42 0.79 16 27 H 0.05 0.89 7.39 -51.93 -0.38 0.51 16 28 H 0.07 1.70 8.14 -51.93 -0.42 1.28 16 29 H 0.06 1.32 7.88 -51.93 -0.41 0.91 16 30 H 0.39 10.87 6.60 45.56 0.30 11.17 16 31 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 32 H 0.06 1.34 7.44 -51.93 -0.39 0.95 16 33 H 0.07 1.77 8.14 -51.93 -0.42 1.35 16 LS Contribution 277.21 15.07 4.18 4.18 Total: -1.00 -29.15 277.21 -6.88 -36.03 By element: Atomic # 1 Polarization: 13.35 SS G_CDS: -4.65 Total: 8.71 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: 0.28 Total: -5.62 kcal Atomic # 7 Polarization: -34.76 SS G_CDS: -0.83 Total: -35.59 kcal Atomic # 8 Polarization: -22.37 SS G_CDS: -0.84 Total: -23.20 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -5.02 Total: 15.50 kcal Total LS contribution 4.18 Total: 4.18 kcal Total: -29.15 -6.88 -36.03 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308318524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.072 kcal (2) G-P(sol) polarization free energy of solvation -29.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.029 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.101 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds