Wall clock time and date at job start Mon Mar 30 2020 03:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 O 1.42907 * 109.47144 * 2 1 4 4 C 1.42894 * 114.00439 * 179.97438 * 3 2 1 5 5 C 1.52994 * 109.47398 * 179.97438 * 4 3 2 6 6 N 1.46904 * 109.47076 * 65.00344 * 5 4 3 7 7 C 1.47960 * 110.99975 * 190.00073 * 6 5 4 8 8 C 1.53940 * 86.18020 * 222.41827 * 7 6 5 9 9 O 1.42900 * 113.73337 * 269.26005 * 8 7 6 10 10 C 1.50694 * 113.73364 * 138.08016 * 8 7 6 11 11 H 1.08000 * 120.00563 * 1.89939 * 10 8 7 12 12 C 1.37885 * 119.99902 * 181.90102 * 10 8 7 13 13 N 1.31516 * 119.99913 * 359.97438 * 12 10 8 14 14 Si 1.86798 * 119.99766 * 179.97438 * 12 10 8 15 15 H 1.48500 * 109.47353 * 269.99586 * 14 12 10 16 16 H 1.48501 * 109.47293 * 30.00037 * 14 12 10 17 17 H 1.48504 * 109.46680 * 149.99835 * 14 12 10 18 18 C 1.48189 * 111.06803 * 90.56485 * 6 5 4 19 19 H 1.08994 * 109.47392 * 60.00021 * 1 2 3 20 20 H 1.09003 * 109.47276 * 180.02562 * 1 2 3 21 21 H 1.08997 * 109.47446 * 299.99977 * 1 2 3 22 22 H 1.08997 * 109.47446 * 240.00023 * 2 1 3 23 23 H 1.09003 * 109.47469 * 119.99737 * 2 1 3 24 24 H 1.09004 * 109.46515 * 60.00216 * 4 3 2 25 25 H 1.08997 * 109.47526 * 300.00540 * 4 3 2 26 26 H 1.09003 * 109.47110 * 305.00564 * 5 4 3 27 27 H 1.09005 * 109.47409 * 185.00693 * 5 4 3 28 28 H 1.09000 * 113.75922 * 108.10132 * 7 6 5 29 29 H 1.08996 * 113.85941 * 336.74802 * 7 6 5 30 30 H 0.96699 * 113.99865 * 178.10203 * 9 8 7 31 31 H 0.97001 * 119.99646 * 179.97438 * 13 12 10 32 32 H 1.08996 * 113.76245 * 23.24297 * 18 6 5 33 33 H 1.08999 * 113.82580 * 251.80952 * 18 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4603 0.0006 5 6 3.8252 2.9385 -0.0001 6 7 3.3854 3.5632 1.2546 7 6 3.5326 5.0343 1.1946 8 6 4.0770 4.9353 2.6311 9 8 3.0697 5.0556 3.6375 10 6 5.2727 5.8156 2.8886 11 1 5.6473 6.4599 2.1070 12 6 5.8885 5.7986 4.1222 13 7 5.4320 5.0143 5.0742 14 14 7.3710 6.8893 4.4411 15 1 8.6118 6.1537 4.0883 16 1 7.2702 8.1167 3.6113 17 1 7.4095 7.2646 5.8774 18 6 4.4417 3.4789 2.2905 19 1 -0.3634 0.5138 -0.8899 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8899 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5138 0.8900 24 1 3.8338 0.9766 -0.8892 25 1 3.8333 0.9768 0.8907 26 1 3.3497 3.4410 -0.8424 27 1 4.9081 3.0256 -0.0894 28 1 2.5851 5.5678 1.1198 29 1 4.2704 5.3742 0.4678 30 1 3.4032 4.9650 4.5406 31 1 5.8655 5.0021 5.9419 32 1 5.4464 3.3613 1.8847 33 1 4.2191 2.7721 3.0898 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308318524.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 03:29:52 Heat of formation + Delta-G solvation = -88.373842 kcal Electronic energy + Delta-G solvation = -14850.570411 eV Core-core repulsion = 12297.562073 eV Total energy + Delta-G solvation = -2553.008338 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 215.131 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.76572 -38.78890 -36.22232 -34.12599 -32.91907 -30.95481 -28.39970 -26.88068 -25.57141 -23.61657 -22.40922 -20.49252 -19.19308 -17.69203 -17.32372 -17.05421 -16.49499 -15.94089 -15.69018 -15.59076 -14.31317 -14.29613 -14.11309 -13.76973 -13.39963 -13.20105 -13.06925 -12.73084 -12.53694 -12.30877 -12.21658 -12.19849 -11.88769 -11.61902 -11.15087 -10.63730 -10.45545 -10.11081 -9.49934 -8.23548 -6.42145 1.42085 1.44521 1.54845 2.37884 2.83288 2.97709 3.15266 3.92814 4.08499 4.12979 4.19841 4.35587 4.38738 4.46223 4.47433 4.51505 4.61222 4.62980 4.87487 4.89885 4.93350 5.06327 5.14410 5.28601 5.41935 5.54919 5.74702 5.99990 6.29701 6.47179 6.63540 7.31033 7.51719 8.81396 Molecular weight = 215.13amu Principal moments of inertia in cm(-1) A = 0.057441 B = 0.006493 C = 0.006333 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.341412 B = 4311.213362 C = 4420.093163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.048 3.952 3 O -0.403 6.403 4 C 0.078 3.922 5 C 0.015 3.985 6 N -0.479 5.479 7 C 0.017 3.983 8 C 0.216 3.784 9 O -0.585 6.585 10 C -0.561 4.561 11 H 0.065 0.935 12 C 0.027 3.973 13 N -0.920 5.920 14 Si 0.969 3.031 15 H -0.272 1.272 16 H -0.269 1.269 17 H -0.281 1.281 18 C -0.002 4.002 19 H 0.061 0.939 20 H 0.093 0.907 21 H 0.047 0.953 22 H 0.063 0.937 23 H 0.043 0.957 24 H 0.076 0.924 25 H 0.036 0.964 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.070 0.930 29 H 0.081 0.919 30 H 0.381 0.619 31 H 0.273 0.727 32 H 0.063 0.937 33 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.892 -7.857 -8.994 12.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.029 4.029 3 O -0.323 6.323 4 C 0.001 3.999 5 C -0.113 4.113 6 N -0.202 5.202 7 C -0.112 4.112 8 C 0.176 3.824 9 O -0.396 6.396 10 C -0.599 4.599 11 H 0.083 0.917 12 C -0.173 4.173 13 N -0.560 5.560 14 Si 0.793 3.207 15 H -0.197 1.197 16 H -0.194 1.194 17 H -0.206 1.206 18 C -0.132 4.132 19 H 0.080 0.920 20 H 0.112 0.888 21 H 0.066 0.934 22 H 0.081 0.919 23 H 0.061 0.939 24 H 0.094 0.906 25 H 0.055 0.945 26 H 0.100 0.900 27 H 0.083 0.917 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.234 0.766 31 H 0.083 0.917 32 H 0.081 0.919 33 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -3.025 -7.983 -9.234 12.575 hybrid contribution 2.021 0.438 0.753 2.201 sum -1.004 -7.545 -8.481 11.395 Atomic orbital electron populations 1.21737 0.93065 1.03243 1.02370 1.22643 0.96423 0.83375 1.00423 1.87971 1.21474 1.27406 1.95410 1.22392 0.81423 0.95888 1.00154 1.22784 0.99007 0.95316 0.94226 1.68523 1.39213 1.06362 1.06071 1.24042 1.00063 0.90004 0.97064 1.20155 0.85712 0.91016 0.85563 1.86040 1.38044 1.95392 1.20092 1.21919 1.13335 1.25477 0.99179 0.91662 1.25834 1.00026 0.96014 0.95437 1.69524 1.42638 1.39151 1.04724 0.85397 0.78892 0.78962 0.77400 1.19712 1.19377 1.20631 1.24554 0.92742 1.00952 0.94917 0.92034 0.88790 0.93378 0.91875 0.93862 0.90623 0.94536 0.90027 0.91685 0.91152 0.90103 0.76627 0.91710 0.91924 0.93136 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.15 10.28 71.98 0.74 -2.40 16 2 C 0.05 1.17 6.66 71.98 0.48 1.65 16 3 O -0.40 -13.38 10.29 -148.98 -1.53 -14.92 16 4 C 0.08 2.37 6.26 71.98 0.45 2.82 16 5 C 0.02 0.52 5.18 86.30 0.45 0.97 16 6 N -0.48 -20.89 6.11 -910.15 -5.56 -26.45 16 7 C 0.02 0.76 7.34 86.41 0.63 1.40 16 8 C 0.22 11.35 1.40 -10.89 -0.02 11.33 16 9 O -0.59 -33.38 13.48 -148.98 -2.01 -35.39 16 10 C -0.56 -30.33 8.61 25.60 0.22 -30.11 16 11 H 0.07 3.42 7.81 -2.91 -0.02 3.40 16 12 C 0.03 1.41 5.40 84.66 0.46 1.87 16 13 N -0.92 -50.24 11.20 21.45 0.24 -50.00 16 14 Si 0.97 41.64 29.54 68.60 2.03 43.67 16 15 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 16 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 17 H -0.28 -11.86 7.11 99.48 0.71 -11.15 16 18 C 0.00 -0.11 7.37 86.37 0.64 0.53 16 19 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 20 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 21 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 22 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 23 H 0.04 1.05 8.14 -2.39 -0.02 1.04 16 24 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.08 2.60 8.08 -2.39 -0.02 2.59 16 27 H 0.07 2.06 7.39 -2.38 -0.02 2.04 16 28 H 0.07 3.19 8.14 -2.39 -0.02 3.17 16 29 H 0.08 3.30 7.88 -2.39 -0.02 3.28 16 30 H 0.38 22.05 6.60 -74.06 -0.49 21.56 16 31 H 0.27 14.05 8.31 -92.71 -0.77 13.28 16 32 H 0.06 2.88 7.44 -2.39 -0.02 2.86 16 33 H 0.05 2.58 8.14 -2.39 -0.02 2.56 16 Total: -1.00 -61.48 277.21 -2.19 -63.67 By element: Atomic # 1 Polarization: 30.77 SS G_CDS: 0.59 Total: 31.36 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: 4.05 Total: -11.95 kcal Atomic # 7 Polarization: -71.13 SS G_CDS: -5.32 Total: -76.45 kcal Atomic # 8 Polarization: -46.76 SS G_CDS: -3.54 Total: -50.30 kcal Atomic # 14 Polarization: 41.64 SS G_CDS: 2.03 Total: 43.67 kcal Total: -61.48 -2.19 -63.67 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308318524.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.701 kcal (2) G-P(sol) polarization free energy of solvation -61.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.181 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.192 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.673 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds