Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 F 1.39906 * 112.85075 * 45.33528 * 14 12 2 16 16 C 1.53781 * 113.61661 * 274.13416 * 14 12 2 17 17 C 1.53951 * 87.02095 * 220.05143 * 16 14 12 18 18 C 1.53780 * 113.61013 * 176.53068 * 14 12 2 19 19 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 20 20 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 22 22 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 23 23 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 24 24 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 25 25 H 1.09002 * 113.61300 * 334.57553 * 16 14 12 26 26 H 1.08998 * 113.61093 * 105.46711 * 16 14 12 27 27 H 1.09001 * 113.53886 * 270.80896 * 17 16 14 28 28 H 1.09003 * 113.73791 * 139.94617 * 17 16 14 29 29 H 1.09010 * 113.61555 * 254.52992 * 18 14 12 30 30 H 1.09003 * 113.61733 * 25.34783 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 9 0.3285 -2.4894 -0.9171 16 6 0.9899 -2.9553 1.4049 17 6 1.3551 -4.3743 0.9324 18 6 2.2954 -3.7089 -0.0864 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5139 21 1 -0.3633 -0.8900 0.5139 22 1 3.1499 1.1384 -0.5139 23 1 1.6084 2.0284 -0.5139 24 1 4.0311 4.4434 0.8503 25 1 1.6388 -2.5776 2.1950 26 1 -0.0692 -2.8275 1.6285 27 1 0.5225 -4.9083 0.4744 28 1 1.8755 -4.9670 1.6848 29 1 2.2887 -4.1889 -1.0651 30 1 3.3024 -3.5374 0.2939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000308450467.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -62.297999 kcal Electronic energy + Delta-G solvation = -14925.552160 eV Core-core repulsion = 12250.214251 eV Total energy + Delta-G solvation = -2675.337910 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -47.70920 -39.26120 -36.98513 -34.82817 -32.60272 -28.25078 -26.54084 -25.81292 -25.27928 -22.75937 -19.97034 -18.86529 -16.90320 -16.54851 -16.09309 -15.53064 -14.82093 -14.69019 -14.19627 -13.98627 -13.35575 -12.86104 -12.57856 -12.21512 -12.15127 -11.83001 -11.39345 -11.23353 -11.09102 -10.97830 -10.85495 -10.60618 -10.27628 -10.17184 -9.64373 -8.87067 -8.46503 -7.70314 -6.06944 -4.12143 3.13701 3.28104 3.35551 3.39376 3.77795 4.22256 4.38943 4.42383 4.68134 4.77060 4.89180 5.27280 5.53093 5.60570 5.71308 5.77687 5.82097 5.90509 5.99900 6.04358 6.25801 6.41760 7.00694 7.39121 7.47439 7.88715 8.19328 8.31374 8.80838 8.97012 9.52832 11.01312 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008467 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.098315 B = 3306.140735 C = 3465.241210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.590 5.590 3 C 0.242 3.758 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.061 3.939 7 N -0.894 5.894 8 Si 0.899 3.101 9 H -0.273 1.273 10 H -0.282 1.282 11 H -0.283 1.283 12 C 0.501 3.499 13 O -0.528 6.528 14 C 0.069 3.931 15 F -0.183 7.183 16 C -0.144 4.144 17 C -0.139 4.139 18 C -0.136 4.136 19 H 0.049 0.951 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.045 0.955 23 H 0.035 0.965 24 H 0.263 0.737 25 H 0.104 0.896 26 H 0.084 0.916 27 H 0.085 0.915 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.090 -12.128 0.151 14.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.321 5.321 3 C 0.123 3.877 4 C -0.566 4.566 5 H 0.076 0.924 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.727 3.273 9 H -0.198 1.198 10 H -0.208 1.208 11 H -0.209 1.209 12 C 0.285 3.715 13 O -0.405 6.405 14 C 0.047 3.953 15 F -0.163 7.163 16 C -0.182 4.182 17 C -0.177 4.177 18 C -0.174 4.174 19 H 0.067 0.933 20 H 0.092 0.908 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.053 0.947 24 H 0.073 0.927 25 H 0.122 0.878 26 H 0.103 0.897 27 H 0.103 0.897 28 H 0.097 0.903 29 H 0.099 0.901 30 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -6.389 -11.905 0.075 13.511 hybrid contribution -0.057 0.519 0.828 0.979 sum -6.447 -11.385 0.903 13.115 Atomic orbital electron populations 1.21744 0.80910 1.02482 1.00936 1.48173 1.06583 1.07637 1.69705 1.19375 0.92609 0.77934 0.97733 1.21443 1.36582 1.06385 0.92148 0.92351 1.24950 0.95313 0.96351 0.97543 1.69943 1.38312 1.14325 1.30707 0.86420 0.78091 0.78346 0.84437 1.19785 1.20833 1.20911 1.20204 0.88067 0.84713 0.78547 1.90679 1.13136 1.86493 1.50187 1.22246 0.86625 0.95955 0.90447 1.92838 1.57974 1.97495 1.68032 1.23508 1.03287 0.96363 0.95047 1.22903 0.99626 0.96091 0.99046 1.23388 0.99776 0.93198 1.01011 0.93271 0.90793 0.92298 0.93728 0.94710 0.92701 0.87797 0.89729 0.89680 0.90327 0.90119 0.86968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.33 59.85 0.56 2.01 16 2 N -0.59 -13.19 2.86 -182.95 -0.52 -13.71 16 3 C 0.24 6.49 5.16 -5.20 -0.03 6.46 16 4 C -0.53 -15.04 9.39 -34.45 -0.32 -15.37 16 5 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 6 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 7 N -0.89 -26.70 13.29 55.43 0.74 -25.96 16 8 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 9 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 C 0.50 10.90 7.10 -10.98 -0.08 10.82 16 13 O -0.53 -13.40 15.46 5.56 0.09 -13.31 16 14 C 0.07 1.14 1.11 -90.96 -0.10 1.04 16 15 F -0.18 -2.95 15.25 2.25 0.03 -2.92 16 16 C -0.14 -1.94 6.97 -25.83 -0.18 -2.12 16 17 C -0.14 -1.57 8.07 -25.83 -0.21 -1.77 16 18 C -0.14 -1.90 7.32 -25.92 -0.19 -2.09 16 19 H 0.05 0.79 8.13 -51.93 -0.42 0.36 16 20 H 0.07 1.28 8.07 -51.93 -0.42 0.86 16 21 H 0.06 0.90 5.66 -51.93 -0.29 0.60 16 22 H 0.04 1.33 7.42 -51.93 -0.39 0.95 16 23 H 0.03 0.94 8.07 -51.93 -0.42 0.52 16 24 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 25 H 0.10 1.49 8.09 -51.93 -0.42 1.07 16 26 H 0.08 1.01 7.84 -51.93 -0.41 0.60 16 27 H 0.08 0.85 8.14 -51.93 -0.42 0.42 16 28 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 29 H 0.08 1.03 8.14 -51.92 -0.42 0.61 16 30 H 0.11 1.70 7.39 -51.93 -0.38 1.31 16 LS Contribution 258.85 15.07 3.90 3.90 Total: -1.00 -32.09 258.85 -5.40 -37.49 By element: Atomic # 1 Polarization: 1.04 SS G_CDS: -3.96 Total: -2.93 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.65 Total: 0.62 kcal Atomic # 7 Polarization: -39.88 SS G_CDS: 0.21 Total: -39.67 kcal Atomic # 8 Polarization: -13.40 SS G_CDS: 0.09 Total: -13.31 kcal Atomic # 9 Polarization: -2.95 SS G_CDS: 0.03 Total: -2.92 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 3.90 Total: 3.90 kcal Total: -32.09 -5.40 -37.49 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308450467.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.808 kcal (2) G-P(sol) polarization free energy of solvation -32.094 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.902 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.490 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds