Wall clock time and date at job start Mon Mar 30 2020 02:28:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46502 * 120.00062 * 2 1 4 4 C 1.50691 * 109.47318 * 90.00113 * 3 2 1 5 5 H 1.08001 * 119.99896 * 0.02562 * 4 3 2 6 6 C 1.37874 * 120.00413 * 179.97438 * 4 3 2 7 7 N 1.31516 * 119.99924 * 0.02562 * 6 4 3 8 8 Si 1.86799 * 120.00255 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.47163 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47207 * 120.00516 * 8 6 4 11 11 H 1.48500 * 109.47187 * 240.00340 * 8 6 4 12 12 C 1.34779 * 120.00212 * 180.02562 * 2 1 3 13 13 O 1.21279 * 120.00410 * 179.97438 * 12 2 1 14 14 C 1.50703 * 119.99541 * 359.97438 * 12 2 1 15 15 F 1.39906 * 112.85075 * 45.33528 * 14 12 2 16 16 C 1.53781 * 113.61661 * 274.13416 * 14 12 2 17 17 C 1.53951 * 87.02095 * 220.05143 * 16 14 12 18 18 C 1.53780 * 113.61013 * 176.53068 * 14 12 2 19 19 H 1.09002 * 109.47391 * 89.99876 * 1 2 3 20 20 H 1.09001 * 109.46813 * 329.99933 * 1 2 3 21 21 H 1.09004 * 109.47041 * 210.00060 * 1 2 3 22 22 H 1.09002 * 109.47278 * 210.00284 * 3 2 1 23 23 H 1.09006 * 109.46998 * 329.99806 * 3 2 1 24 24 H 0.96995 * 120.00442 * 179.97438 * 7 6 4 25 25 H 1.09002 * 113.61300 * 334.57553 * 16 14 12 26 26 H 1.08998 * 113.61093 * 105.46711 * 16 14 12 27 27 H 1.09001 * 113.53886 * 270.80896 * 17 16 14 28 28 H 1.09003 * 113.73791 * 139.94617 * 17 16 14 29 29 H 1.09010 * 113.61555 * 254.52992 * 18 14 12 30 30 H 1.09003 * 113.61733 * 25.34783 * 18 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7038 1.4207 5 1 2.0982 1.0958 2.2416 6 6 3.1270 2.8774 1.6727 7 7 3.5543 3.6176 0.6731 8 14 3.4390 3.4163 3.4339 9 1 2.8608 2.4164 4.3672 10 1 4.9016 3.5241 3.6668 11 1 2.8019 4.7371 3.6676 12 6 2.1389 -1.1672 -0.0005 13 8 3.3517 -1.1672 -0.0010 14 6 1.3854 -2.4723 -0.0005 15 9 0.3285 -2.4894 -0.9171 16 6 0.9899 -2.9553 1.4049 17 6 1.3551 -4.3743 0.9324 18 6 2.2954 -3.7089 -0.0864 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3633 0.8900 0.5139 21 1 -0.3633 -0.8900 0.5139 22 1 3.1499 1.1384 -0.5139 23 1 1.6084 2.0284 -0.5139 24 1 4.0311 4.4434 0.8503 25 1 1.6388 -2.5776 2.1950 26 1 -0.0692 -2.8275 1.6285 27 1 0.5225 -4.9083 0.4744 28 1 1.8755 -4.9670 1.6848 29 1 2.2887 -4.1889 -1.0651 30 1 3.3024 -3.5374 0.2939 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000308450467.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:28:49 Heat of formation + Delta-G solvation = -83.171513 kcal Electronic energy + Delta-G solvation = -14926.457304 eV Core-core repulsion = 12250.214251 eV Total energy + Delta-G solvation = -2676.243053 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 215.106 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -49.00022 -40.87210 -38.27605 -36.66017 -34.74819 -30.23222 -27.99315 -27.01300 -26.85150 -24.63226 -21.30815 -20.29022 -18.74728 -18.45679 -17.60238 -16.97486 -16.54908 -16.15709 -15.68181 -15.56114 -14.84172 -14.38112 -14.19971 -13.87785 -13.58822 -13.42720 -13.13196 -12.86902 -12.58780 -12.52240 -12.35002 -12.24324 -11.91148 -11.72645 -11.37931 -10.68547 -10.52436 -9.56443 -8.26178 -6.41724 1.35791 1.38065 1.47591 1.51692 2.12348 2.38382 3.02791 3.04130 3.15904 3.41059 3.66748 3.69599 4.27849 4.50593 4.61392 4.63294 4.69711 4.82531 4.85445 4.90991 4.97744 5.01318 5.13969 5.38189 5.48971 5.74045 5.99330 6.54827 6.67336 7.12725 7.31307 8.81893 Molecular weight = 215.11amu Principal moments of inertia in cm(-1) A = 0.043665 B = 0.008467 C = 0.008078 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.098315 B = 3306.140735 C = 3465.241210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.081 3.919 2 N -0.600 5.600 3 C 0.256 3.744 4 C -0.544 4.544 5 H 0.056 0.944 6 C 0.006 3.994 7 N -0.929 5.929 8 Si 0.972 3.028 9 H -0.264 1.264 10 H -0.281 1.281 11 H -0.269 1.269 12 C 0.488 3.512 13 O -0.577 6.577 14 C 0.066 3.934 15 F -0.178 7.178 16 C -0.141 4.141 17 C -0.115 4.115 18 C -0.140 4.140 19 H 0.065 0.935 20 H 0.073 0.927 21 H 0.087 0.913 22 H 0.000 1.000 23 H 0.025 0.975 24 H 0.268 0.732 25 H 0.091 0.909 26 H 0.107 0.893 27 H 0.108 0.892 28 H 0.100 0.900 29 H 0.093 0.907 30 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.628 -13.605 1.583 16.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 N -0.330 5.330 3 C 0.135 3.865 4 C -0.582 4.582 5 H 0.075 0.925 6 C -0.193 4.193 7 N -0.568 5.568 8 Si 0.796 3.204 9 H -0.188 1.188 10 H -0.206 1.206 11 H -0.194 1.194 12 C 0.274 3.726 13 O -0.458 6.458 14 C 0.044 3.956 15 F -0.158 7.158 16 C -0.179 4.179 17 C -0.152 4.152 18 C -0.178 4.178 19 H 0.084 0.916 20 H 0.092 0.908 21 H 0.105 0.895 22 H 0.018 0.982 23 H 0.043 0.957 24 H 0.077 0.923 25 H 0.110 0.890 26 H 0.126 0.874 27 H 0.127 0.873 28 H 0.119 0.881 29 H 0.111 0.889 30 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -7.977 -13.403 1.499 15.669 hybrid contribution 0.423 0.996 0.296 1.122 sum -7.553 -12.407 1.796 14.636 Atomic orbital electron populations 1.21976 0.77849 1.03865 1.02460 1.48239 1.08519 1.06532 1.69700 1.18873 0.91073 0.79970 0.96620 1.21682 1.37097 1.06780 0.92650 0.92539 1.25919 0.94738 0.96297 1.02319 1.70062 1.38777 1.14829 1.33177 0.85295 0.77930 0.78462 0.78695 1.18835 1.20643 1.19380 1.21286 0.88014 0.86265 0.77006 1.90638 1.15527 1.87516 1.52100 1.22322 0.87253 0.93157 0.92840 1.92847 1.57547 1.97292 1.68147 1.23566 1.04411 0.97537 0.92361 1.22877 0.99315 0.94865 0.98121 1.23453 0.99173 0.92300 1.02855 0.91628 0.90832 0.89473 0.98218 0.95652 0.92273 0.89046 0.87445 0.87319 0.88139 0.88858 0.88746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.73 9.33 127.77 1.19 3.92 16 2 N -0.60 -27.22 2.86 -851.12 -2.43 -29.65 16 3 C 0.26 14.27 5.16 85.63 0.44 14.71 16 4 C -0.54 -31.71 9.39 25.60 0.24 -31.47 16 5 H 0.06 3.24 7.81 -2.91 -0.02 3.21 16 6 C 0.01 0.36 5.46 84.65 0.46 0.83 16 7 N -0.93 -56.65 13.29 21.45 0.28 -56.37 16 8 Si 0.97 44.83 29.54 68.60 2.03 46.86 16 9 H -0.26 -11.70 7.11 99.48 0.71 -10.99 16 10 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 11 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 12 C 0.49 21.55 7.10 87.66 0.62 22.17 16 13 O -0.58 -30.60 15.46 -3.02 -0.05 -30.65 16 14 C 0.07 2.07 1.11 -11.01 -0.01 2.06 16 15 F -0.18 -5.29 15.25 44.97 0.69 -4.60 16 16 C -0.14 -3.39 6.97 31.18 0.22 -3.17 16 17 C -0.11 -2.12 8.07 31.18 0.25 -1.87 16 18 C -0.14 -3.67 7.32 31.12 0.23 -3.44 16 19 H 0.07 2.00 8.13 -2.39 -0.02 1.98 16 20 H 0.07 2.48 8.07 -2.39 -0.02 2.46 16 21 H 0.09 2.44 5.66 -2.38 -0.01 2.42 16 22 H 0.00 -0.02 7.42 -2.39 -0.02 -0.04 16 23 H 0.03 1.44 8.07 -2.38 -0.02 1.42 16 24 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 25 H 0.09 2.46 8.09 -2.39 -0.02 2.44 16 26 H 0.11 2.10 7.84 -2.39 -0.02 2.08 16 27 H 0.11 1.58 8.14 -2.39 -0.02 1.56 16 28 H 0.10 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.09 2.18 8.14 -2.38 -0.02 2.16 16 30 H 0.09 2.84 7.39 -2.39 -0.02 2.82 16 Total: -1.00 -71.61 258.85 5.29 -66.32 By element: Atomic # 1 Polarization: 3.23 SS G_CDS: 1.12 Total: 4.35 kcal Atomic # 6 Polarization: 0.09 SS G_CDS: 3.64 Total: 3.74 kcal Atomic # 7 Polarization: -83.87 SS G_CDS: -2.15 Total: -86.02 kcal Atomic # 8 Polarization: -30.60 SS G_CDS: -0.05 Total: -30.65 kcal Atomic # 9 Polarization: -5.29 SS G_CDS: 0.69 Total: -4.60 kcal Atomic # 14 Polarization: 44.83 SS G_CDS: 2.03 Total: 46.86 kcal Total: -71.61 5.29 -66.32 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000308450467.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.852 kcal (2) G-P(sol) polarization free energy of solvation -71.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.319 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds